Wall clock time and date at job start Sun Mar 7 2021 02:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37788 * 119.84685 * 2 1 4 4 C 1.39703 * 119.90467 * 180.02562 * 3 2 1 5 5 C 1.47541 * 120.19516 * 180.02562 * 4 3 2 6 6 O 1.21584 * 120.00490 * 179.97438 * 5 4 3 7 7 N 1.34778 * 119.99340 * 359.97438 * 5 4 3 8 8 C 1.46501 * 119.99600 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47033 * 179.97438 * 8 7 5 10 10 H 1.09004 * 109.46867 * 55.00320 * 9 8 7 11 11 C 1.53001 * 109.47172 * 175.00188 * 9 8 7 12 12 C 1.53001 * 109.47189 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.46627 * 299.99797 * 12 11 9 14 14 H 1.09001 * 109.47317 * 299.99501 * 13 12 11 15 15 C 1.53005 * 109.46939 * 179.97438 * 13 12 11 16 16 O 1.42898 * 109.47286 * 174.99642 * 15 13 12 17 17 C 1.52994 * 109.47230 * 60.00458 * 13 12 11 18 18 C 1.52997 * 109.47436 * 295.00132 * 9 8 7 19 19 C 1.40139 * 119.62086 * 0.02562 * 4 3 2 20 20 O 1.35649 * 120.15526 * 179.97438 * 19 4 3 21 21 C 1.38710 * 119.69888 * 359.97438 * 19 4 3 22 22 C 1.50699 * 119.96174 * 179.97438 * 21 19 4 23 23 O 1.42892 * 109.47249 * 285.00262 * 22 21 19 24 24 Si 1.86298 * 109.47032 * 164.99648 * 22 21 19 25 25 C 1.38062 * 120.07933 * 0.25618 * 21 19 4 26 26 H 1.08994 * 109.47158 * 89.99774 * 1 2 3 27 27 H 1.08998 * 109.47197 * 210.00325 * 1 2 3 28 28 H 1.09005 * 109.46985 * 329.99856 * 1 2 3 29 29 H 1.07999 * 120.05332 * 359.97438 * 3 2 1 30 30 H 0.96997 * 120.00482 * 359.97438 * 7 5 4 31 31 H 1.08996 * 109.47359 * 300.00164 * 8 7 5 32 32 H 1.09006 * 109.47169 * 60.00617 * 8 7 5 33 33 H 1.09000 * 109.47251 * 300.00212 * 11 9 8 34 34 H 1.08994 * 109.47008 * 60.00228 * 11 9 8 35 35 H 1.09004 * 109.47304 * 59.99853 * 12 11 9 36 36 H 1.09000 * 109.47166 * 179.97438 * 12 11 9 37 37 H 1.08997 * 109.47093 * 295.00430 * 15 13 12 38 38 H 1.09004 * 109.46921 * 55.00205 * 15 13 12 39 39 H 0.96701 * 113.99632 * 179.97438 * 16 15 13 40 40 H 1.09001 * 109.48006 * 59.99797 * 17 13 12 41 41 H 1.09009 * 109.47387 * 179.97438 * 17 13 12 42 42 H 1.08994 * 109.47254 * 300.00084 * 18 9 8 43 43 H 1.09005 * 109.46794 * 60.00193 * 18 9 8 44 44 H 0.96707 * 113.99759 * 270.02022 * 20 19 4 45 45 H 1.09004 * 109.46453 * 45.00330 * 22 21 19 46 46 H 0.96703 * 114.00176 * 299.99748 * 23 22 21 47 47 H 1.48506 * 109.99834 * 58.68765 * 24 22 21 48 48 H 1.48502 * 110.00011 * 180.02562 * 24 22 21 49 49 H 1.08000 * 119.80335 * 179.72891 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1951 0.0000 4 6 3.5898 1.1965 -0.0005 5 6 4.3306 2.4725 0.0000 6 8 5.5464 2.4697 0.0000 7 7 3.6594 3.6412 0.0005 8 6 4.3948 4.9083 0.0017 9 6 3.4033 6.0735 0.0014 10 1 2.7183 5.9679 0.8427 11 6 4.1671 7.3932 0.1283 12 6 3.1755 8.5584 0.1287 13 6 2.3813 8.5525 -1.1790 14 1 3.0660 8.6584 -2.0205 15 6 1.3893 9.7173 -1.1784 16 8 0.7302 9.7823 -2.4447 17 6 1.6175 7.2329 -1.3058 18 6 2.6095 6.0675 -1.3065 19 6 4.2837 -0.0210 -0.0016 20 8 5.6401 -0.0323 -0.0027 21 6 3.5771 -1.2147 -0.0016 22 6 4.3173 -2.5274 -0.0034 23 8 4.8535 -2.7702 -1.3054 24 14 3.1449 -3.9019 0.4518 25 6 2.1966 -1.2016 -0.0059 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6512 2.1295 -0.0004 30 1 2.6894 3.6435 0.0002 31 1 5.0213 4.9640 0.8919 32 1 5.0219 4.9652 -0.8881 33 1 4.7327 7.3975 1.0601 34 1 4.8520 7.4988 -0.7130 35 1 2.4908 8.4525 0.9702 36 1 3.7197 9.4985 0.2195 37 1 0.6505 9.5650 -0.3916 38 1 1.9242 10.6500 -0.9990 39 1 0.0850 10.4992 -2.5159 40 1 0.9327 7.1270 -0.4644 41 1 1.0513 7.2289 -2.2373 42 1 3.2944 6.1731 -2.1477 43 1 2.0653 5.1274 -1.3968 44 1 6.0327 -0.0349 -0.8865 45 1 5.1295 -2.4874 0.7225 46 1 4.1857 -2.8183 -2.0032 47 1 2.0160 -3.9465 -0.5120 48 1 3.8629 -5.2018 0.4542 49 1 1.6510 -2.1336 -0.0103 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14939082_13422088.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:01:32 Heat of formation + Delta-G solvation = -156.381340 kcal Electronic energy + Delta-G solvation = -29470.055454 eV Core-core repulsion = 25362.642197 eV Total energy + Delta-G solvation = -4107.413256 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.182 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.78686 -40.51088 -39.71026 -38.07612 -37.82755 -37.55521 -35.80282 -33.48037 -33.04901 -32.20223 -31.70629 -28.27597 -27.52057 -26.77938 -25.47818 -24.22574 -23.54877 -22.06932 -21.68352 -21.40222 -20.70217 -19.67676 -18.43482 -18.19132 -18.11010 -17.42444 -16.99745 -16.58508 -16.46104 -16.12596 -16.01141 -15.88233 -15.66306 -15.22659 -15.03867 -14.94192 -14.79851 -14.55673 -14.41598 -14.20294 -13.94321 -13.60533 -13.47399 -13.30889 -13.10034 -12.94113 -12.82299 -12.57869 -12.50054 -12.23428 -12.05203 -11.91825 -11.84698 -11.71519 -11.41369 -11.20622 -11.07513 -10.99816 -10.77936 -10.55351 -10.31021 -10.03158 -9.50925 -4.94279 -0.35844 0.05596 1.24899 1.53218 1.70080 1.91753 2.06483 2.53605 3.17823 3.30520 3.36160 3.50059 3.55950 3.61779 3.72710 3.75367 3.76819 4.07831 4.11322 4.17128 4.18623 4.30177 4.38683 4.44167 4.48276 4.50421 4.55016 4.58063 4.61582 4.65746 4.69351 4.75859 4.79705 4.82659 4.89504 4.95025 4.96752 5.08408 5.14629 5.18092 5.20869 5.23532 5.24615 5.29006 5.36757 5.41897 5.45625 5.55582 5.67037 6.43169 6.45865 6.67783 6.88871 7.13188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.092 4.092 3 C -0.061 4.061 4 C -0.180 4.180 5 C 0.552 3.448 6 O -0.567 6.567 7 N -0.711 5.711 8 C 0.126 3.874 9 C -0.087 4.087 10 H 0.092 0.908 11 C -0.111 4.111 12 C -0.107 4.107 13 C -0.090 4.090 14 H 0.060 0.940 15 C 0.076 3.924 16 O -0.596 6.596 17 C -0.105 4.105 18 C -0.112 4.112 19 C 0.162 3.838 20 O -0.493 6.493 21 C -0.152 4.152 22 C -0.086 4.086 23 O -0.547 6.547 24 Si 0.779 3.221 25 C -0.080 4.080 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.158 0.842 30 H 0.412 0.588 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.395 0.605 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.071 0.929 44 H 0.401 0.599 45 H 0.108 0.892 46 H 0.386 0.614 47 H -0.259 1.259 48 H -0.304 1.304 49 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.985 2.779 1.893 10.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.093 4.093 3 C -0.080 4.080 4 C -0.183 4.183 5 C 0.341 3.659 6 O -0.447 6.447 7 N -0.365 5.365 8 C 0.003 3.997 9 C -0.105 4.105 10 H 0.111 0.889 11 C -0.149 4.149 12 C -0.144 4.144 13 C -0.109 4.109 14 H 0.078 0.922 15 C -0.002 4.002 16 O -0.405 6.405 17 C -0.142 4.142 18 C -0.150 4.150 19 C 0.115 3.885 20 O -0.305 6.305 21 C -0.153 4.153 22 C -0.193 4.193 23 O -0.355 6.355 24 Si 0.683 3.317 25 C -0.097 4.097 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.176 0.824 30 H 0.251 0.749 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.244 0.756 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.090 0.910 44 H 0.260 0.740 45 H 0.126 0.874 46 H 0.235 0.765 47 H -0.185 1.185 48 H -0.232 1.232 49 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.607 1.589 2.451 9.089 hybrid contribution 0.217 0.836 -1.717 1.922 sum -8.389 2.426 0.733 8.764 Atomic orbital electron populations 1.20929 0.87958 1.04805 1.03727 1.20115 0.98125 0.91688 0.99329 1.21413 0.90910 0.99892 0.95768 1.20418 0.95096 0.92492 1.10315 1.18367 0.86907 0.84483 0.76192 1.90809 1.15080 1.88007 1.50772 1.45811 1.10982 1.04912 1.74757 1.21417 0.94772 0.82021 1.01516 1.21347 0.96682 0.93172 0.99330 0.88941 1.21479 0.97767 0.93124 1.02578 1.21459 0.97844 0.98553 0.96567 1.21184 0.96543 0.94606 0.98577 0.92197 1.22316 0.94856 0.97929 0.85074 1.86433 1.60066 1.58032 1.35940 1.21464 0.97449 0.93242 1.02088 1.21605 0.97902 0.98796 0.96699 1.18565 0.83522 0.90887 0.95502 1.84653 1.15541 1.96073 1.34195 1.20633 0.94619 0.94954 1.05073 1.25272 1.06031 1.00151 0.87857 1.86603 1.38094 1.93652 1.17136 0.93827 0.76039 0.73046 0.88834 1.21419 0.92162 0.99785 0.96379 0.89983 0.89861 0.89688 0.82446 0.74936 0.92229 0.92693 0.90833 0.92176 0.90609 0.91202 0.92565 0.93177 0.75567 0.91044 0.92579 0.92882 0.90999 0.74011 0.87428 0.76480 1.18504 1.23233 0.82746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 1.16 10.00 71.24 0.71 1.87 16 2 C -0.09 0.42 5.87 -19.90 -0.12 0.30 16 3 C -0.06 0.18 9.18 22.52 0.21 0.39 16 4 C -0.18 -0.80 5.89 -20.01 -0.12 -0.91 16 5 C 0.55 4.40 7.76 86.70 0.67 5.08 16 6 O -0.57 -9.62 15.16 16.94 0.26 -9.36 16 7 N -0.71 -0.31 5.23 -466.26 -2.44 -2.75 16 8 C 0.13 0.10 5.06 86.38 0.44 0.54 16 9 C -0.09 0.37 2.22 -10.79 -0.02 0.34 16 10 H 0.09 -0.59 8.14 -2.38 -0.02 -0.61 16 11 C -0.11 0.40 5.20 30.59 0.16 0.56 16 12 C -0.11 0.48 5.20 30.59 0.16 0.64 16 13 C -0.09 0.17 2.43 -10.79 -0.03 0.15 16 14 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 15 C 0.08 -0.19 6.43 71.98 0.46 0.27 16 16 O -0.60 -0.30 13.19 -148.98 -1.97 -2.27 16 17 C -0.10 0.27 5.10 30.61 0.16 0.43 16 18 C -0.11 0.40 5.08 30.61 0.16 0.56 16 19 C 0.16 1.11 6.69 22.84 0.15 1.26 16 20 O -0.49 -5.43 10.91 -68.72 -0.75 -6.18 16 21 C -0.15 -0.29 5.27 -19.79 -0.10 -0.39 16 22 C -0.09 -0.16 2.38 71.24 0.17 0.01 16 23 O -0.55 -2.07 12.88 -148.98 -1.92 -3.99 16 24 Si 0.78 -1.92 30.25 68.60 2.08 0.16 16 25 C -0.08 0.23 8.30 22.30 0.19 0.42 16 26 H 0.08 -0.86 8.14 -2.39 -0.02 -0.88 16 27 H 0.08 -0.93 8.08 -2.39 -0.02 -0.95 16 28 H 0.08 -1.01 8.08 -2.38 -0.02 -1.03 16 29 H 0.16 -1.49 6.40 -2.91 -0.02 -1.51 16 30 H 0.41 -2.47 5.69 -92.71 -0.53 -3.00 16 31 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.05 0.23 8.14 -2.38 -0.02 0.21 16 33 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 34 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 35 H 0.08 -0.46 8.14 -2.38 -0.02 -0.48 16 36 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 37 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 38 H 0.05 -0.19 8.14 -2.38 -0.02 -0.21 16 39 H 0.39 -3.02 9.12 -74.06 -0.68 -3.69 16 40 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 41 H 0.06 0.05 7.82 -2.38 -0.02 0.03 16 42 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 43 H 0.07 -0.41 7.18 -2.38 -0.02 -0.43 16 44 H 0.40 2.72 9.06 -74.05 -0.67 2.05 16 45 H 0.11 0.47 7.83 -2.38 -0.02 0.45 16 46 H 0.39 -1.22 8.70 -74.06 -0.64 -1.86 16 47 H -0.26 0.57 6.67 99.48 0.66 1.24 16 48 H -0.30 -1.79 7.11 99.48 0.71 -1.08 16 49 H 0.16 -1.09 4.83 -2.91 -0.01 -1.10 16 Total: 0.00 -23.90 388.12 -3.03 -26.93 By element: Atomic # 1 Polarization: -12.52 SS G_CDS: -1.53 Total: -14.05 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 3.24 Total: 11.51 kcal Atomic # 7 Polarization: -0.31 SS G_CDS: -2.44 Total: -2.75 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -4.38 Total: -21.80 kcal Atomic # 14 Polarization: -1.92 SS G_CDS: 2.08 Total: 0.16 kcal Total: -23.90 -3.03 -26.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14939082_13422088.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.455 kcal (2) G-P(sol) polarization free energy of solvation -23.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds