Wall clock time and date at job start Sun Mar 7 2021 02:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.39043 * 110.99815 * 236.04799 * 2 1 3 5 5 C 1.39203 * 119.93121 * 240.00456 * 4 2 1 6 6 C 1.50697 * 119.96538 * 359.97438 * 5 4 2 7 7 O 1.42905 * 109.46908 * 75.00440 * 6 5 4 8 8 Si 1.86299 * 109.47352 * 195.00366 * 6 5 4 9 9 C 1.37624 * 120.06769 * 179.97438 * 5 4 2 10 10 C 1.39775 * 119.93493 * 0.02562 * 9 5 4 11 11 C 1.47524 * 120.07094 * 180.02562 * 10 9 5 12 12 O 1.21592 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99834 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99738 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47003 * 179.97438 * 14 13 11 16 16 H 1.08999 * 109.47227 * 304.99923 * 15 14 13 17 17 C 1.53002 * 109.47273 * 64.99847 * 15 14 13 18 18 C 1.52992 * 109.47403 * 180.02562 * 17 15 14 19 19 C 1.53005 * 109.47138 * 300.00076 * 18 17 15 20 20 H 1.08999 * 109.47056 * 300.00026 * 19 18 17 21 21 C 1.53001 * 109.47209 * 179.97438 * 19 18 17 22 22 O 1.42899 * 109.47114 * 65.00240 * 21 19 18 23 23 C 1.53002 * 109.47229 * 60.00040 * 19 18 17 24 24 C 1.52997 * 109.47309 * 185.00110 * 15 14 13 25 25 C 1.39820 * 119.85821 * 359.97438 * 10 9 5 26 26 C 1.37582 * 119.93048 * 359.70200 * 25 10 9 27 27 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 28 28 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 29 29 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 30 30 H 1.09007 * 109.46909 * 60.00094 * 3 2 1 31 31 H 1.08998 * 109.47110 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47061 * 300.00284 * 3 2 1 33 33 H 1.09006 * 109.47281 * 315.00631 * 6 5 4 34 34 H 0.96696 * 113.99921 * 299.99835 * 7 6 5 35 35 H 1.48500 * 110.00076 * 60.00218 * 8 6 5 36 36 H 1.48501 * 110.00085 * 181.31865 * 8 6 5 37 37 H 1.08000 * 120.03350 * 179.97438 * 9 5 4 38 38 H 0.96995 * 120.00134 * 359.97438 * 13 11 10 39 39 H 1.08997 * 109.47199 * 299.99760 * 14 13 11 40 40 H 1.08995 * 109.47203 * 59.99782 * 14 13 11 41 41 H 1.09000 * 109.47433 * 300.00325 * 17 15 14 42 42 H 1.08999 * 109.46931 * 59.99895 * 17 15 14 43 43 H 1.09002 * 109.47415 * 180.02562 * 18 17 15 44 44 H 1.08999 * 109.47168 * 60.00033 * 18 17 15 45 45 H 1.09001 * 109.46718 * 185.00022 * 21 19 18 46 46 H 1.09001 * 109.46960 * 305.00264 * 21 19 18 47 47 H 0.96700 * 114.00287 * 179.97438 * 22 21 19 48 48 H 1.08991 * 109.47225 * 180.02562 * 23 19 18 49 49 H 1.09003 * 109.47074 * 59.99264 * 23 19 18 50 50 H 1.09008 * 109.47102 * 300.00033 * 24 15 14 51 51 H 1.09001 * 109.47051 * 59.99718 * 24 15 14 52 52 H 1.08002 * 120.02916 * 180.02562 * 25 10 9 53 53 H 1.08002 * 119.96336 * 180.29518 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9673 -0.7250 -1.0768 5 6 2.7792 -1.8331 -0.8519 6 6 3.1173 -2.2448 0.5578 7 8 1.9822 -2.8747 1.1552 8 14 4.5471 -3.4388 0.5301 9 6 3.2735 -2.5530 -1.9156 10 6 2.9599 -2.1702 -3.2228 11 6 3.4876 -2.9401 -4.3652 12 8 4.1965 -3.9085 -4.1702 13 7 3.1847 -2.5694 -5.6251 14 6 3.7092 -3.3337 -6.7596 15 6 3.2188 -2.7075 -8.0666 16 1 2.1309 -2.6422 -8.0524 17 6 3.8121 -1.3050 -8.2144 18 6 3.3212 -0.6786 -9.5211 19 6 3.7641 -1.5466 -10.7007 20 1 4.8521 -1.6120 -10.7153 21 6 3.2727 -0.9205 -12.0074 22 8 3.9163 0.3402 -12.2031 23 6 3.1708 -2.9491 -10.5530 24 6 3.6622 -3.5757 -9.2459 25 6 2.1441 -1.0567 -3.4453 26 6 1.6476 -0.3451 -2.3776 27 1 -0.3634 -1.0252 0.0708 28 1 -0.3633 0.4513 -0.9233 29 1 -0.3633 0.5740 0.8525 30 1 1.6461 1.8947 0.8901 31 1 3.0851 1.3422 0.0005 32 1 1.6460 1.8948 -0.8900 33 1 3.3911 -1.3635 1.1380 34 1 1.1988 -2.3099 1.2031 35 1 5.7339 -2.7958 -0.0889 36 1 4.8698 -3.8770 1.9118 37 1 3.9037 -3.4124 -1.7405 38 1 2.6195 -1.7967 -5.7806 39 1 4.7988 -3.3183 -6.7353 40 1 3.3589 -4.3639 -6.6967 41 1 3.4963 -0.6865 -7.3743 42 1 4.9000 -1.3704 -8.2286 43 1 3.7443 0.3204 -9.6266 44 1 2.2333 -0.6132 -9.5064 45 1 3.5106 -1.5830 -12.8396 46 1 2.1938 -0.7737 -11.9567 47 1 3.6522 0.7949 -13.0146 48 1 3.4867 -3.5676 -11.3931 49 1 2.0829 -2.8837 -10.5382 50 1 4.7502 -3.6411 -9.2601 51 1 3.2395 -4.5748 -9.1406 52 1 1.8997 -0.7588 -4.4543 53 1 1.0135 0.5123 -2.5488 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14939082_13422196.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:01:36 Heat of formation + Delta-G solvation = -96.910837 kcal Electronic energy + Delta-G solvation = -31287.402942 eV Core-core repulsion = 27124.749563 eV Total energy + Delta-G solvation = -4162.653379 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.209 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.75805 -40.70446 -39.87830 -37.75507 -37.61743 -37.29253 -35.87581 -33.29155 -32.47895 -31.69687 -31.28263 -28.59565 -28.27217 -26.94096 -26.08564 -24.58297 -23.77368 -23.14127 -22.80578 -21.68422 -21.16721 -20.66453 -19.18010 -18.21615 -18.09501 -17.78252 -17.42215 -16.69169 -16.46058 -16.43991 -16.03650 -16.02087 -15.84879 -15.39806 -15.21452 -15.15959 -15.10711 -14.78160 -14.65960 -14.48522 -14.22326 -13.97470 -13.93888 -13.54501 -13.43137 -13.10228 -13.06791 -13.01594 -12.80251 -12.73333 -12.64388 -12.49562 -12.21321 -12.03695 -11.89710 -11.42400 -11.39768 -11.32945 -11.17214 -11.06299 -10.97590 -10.77327 -10.24738 -10.10559 -9.80060 -9.62716 -4.93270 -0.41613 0.13797 1.32058 1.53253 1.66497 1.84883 2.05734 2.62175 2.71877 3.31187 3.48896 3.61295 3.63621 3.70031 3.74640 3.77737 3.90156 4.00658 4.10235 4.11579 4.17860 4.19114 4.31378 4.34446 4.38641 4.43866 4.45945 4.50431 4.51977 4.57505 4.59525 4.64084 4.65957 4.71018 4.73335 4.77900 4.83442 4.92527 4.96276 4.97680 5.01538 5.10009 5.12761 5.16538 5.19640 5.22403 5.25315 5.30017 5.37496 5.46667 5.51898 5.57222 5.75563 6.18856 6.43137 6.63755 6.88544 7.10873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.528 5.528 3 C 0.026 3.974 4 C 0.126 3.874 5 C -0.112 4.112 6 C -0.057 4.057 7 O -0.544 6.544 8 Si 0.772 3.228 9 C -0.060 4.060 10 C -0.146 4.146 11 C 0.555 3.445 12 O -0.575 6.575 13 N -0.709 5.709 14 C 0.124 3.876 15 C -0.087 4.087 16 H 0.092 0.908 17 C -0.113 4.113 18 C -0.105 4.105 19 C -0.090 4.090 20 H 0.060 0.940 21 C 0.075 3.925 22 O -0.597 6.597 23 C -0.107 4.107 24 C -0.111 4.111 25 C -0.059 4.059 26 C -0.151 4.151 27 H 0.073 0.927 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.080 0.920 34 H 0.374 0.626 35 H -0.275 1.275 36 H -0.286 1.286 37 H 0.137 0.863 38 H 0.413 0.587 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.070 0.930 45 H 0.050 0.950 46 H 0.055 0.945 47 H 0.395 0.605 48 H 0.069 0.931 49 H 0.075 0.925 50 H 0.060 0.940 51 H 0.075 0.925 52 H 0.159 0.841 53 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.690 4.892 -5.304 9.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.249 5.249 3 C -0.120 4.120 4 C 0.031 3.969 5 C -0.114 4.114 6 C -0.167 4.167 7 O -0.351 6.351 8 Si 0.675 3.325 9 C -0.079 4.079 10 C -0.149 4.149 11 C 0.343 3.657 12 O -0.456 6.456 13 N -0.362 5.362 14 C 0.001 3.999 15 C -0.106 4.106 16 H 0.111 0.889 17 C -0.151 4.151 18 C -0.143 4.143 19 C -0.109 4.109 20 H 0.078 0.922 21 C -0.002 4.002 22 O -0.405 6.405 23 C -0.145 4.145 24 C -0.149 4.149 25 C -0.079 4.079 26 C -0.171 4.171 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.223 0.777 35 H -0.201 1.201 36 H -0.213 1.213 37 H 0.154 0.846 38 H 0.251 0.749 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.244 0.756 48 H 0.088 0.912 49 H 0.093 0.907 50 H 0.079 0.921 51 H 0.094 0.906 52 H 0.177 0.823 53 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.551 3.191 -3.881 6.779 hybrid contribution -1.023 2.287 -0.872 2.653 sum -5.574 5.478 -4.753 9.147 Atomic orbital electron populations 1.22595 0.83910 1.03412 1.02419 1.59451 1.09999 1.15192 1.40285 1.22509 1.00495 0.86454 1.02545 1.18962 0.94851 0.93094 0.89992 1.20188 0.99501 0.95833 0.95853 1.25130 0.97539 1.03888 0.90098 1.86691 1.22675 1.43372 1.82323 0.92244 0.73048 0.86317 0.80895 1.21074 0.97304 0.98118 0.91373 1.19890 1.03209 0.98934 0.92865 1.18386 0.79879 0.83634 0.83783 1.90795 1.39425 1.29406 1.85981 1.45807 1.52537 1.33120 1.04728 1.21464 0.98655 0.95405 0.84414 1.21350 1.01602 0.95148 0.92490 0.88936 1.21605 1.00344 0.95391 0.97751 1.21458 1.01092 0.98297 0.93451 1.21189 1.00407 0.95324 0.93991 0.92174 1.22326 0.96143 0.84591 0.97161 1.86433 1.70567 1.34984 1.48514 1.21473 1.01155 0.94191 0.97642 1.21490 1.01268 0.98867 0.93297 1.21441 0.93521 0.92154 1.00737 1.21821 1.01635 1.01544 0.92112 0.90813 0.93777 0.89388 0.89450 0.91994 0.93656 0.90253 0.77652 1.20103 1.21252 0.84609 0.74851 0.92451 0.91639 0.91046 0.92818 0.92731 0.91139 0.93154 0.92633 0.75587 0.91220 0.90661 0.92110 0.90641 0.82316 0.83043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.14 9.20 127.69 1.17 1.04 16 2 N -0.53 1.28 3.67 -745.08 -2.73 -1.45 16 3 C 0.03 -0.11 9.32 127.69 1.19 1.08 16 4 C 0.13 -0.01 4.65 38.47 0.18 0.17 16 5 C -0.11 -0.41 5.28 -19.78 -0.10 -0.52 16 6 C -0.06 -0.27 2.29 71.24 0.16 -0.11 16 7 O -0.54 -2.95 12.65 -148.98 -1.89 -4.84 16 8 Si 0.77 4.74 30.17 68.60 2.07 6.81 16 9 C -0.06 -0.32 8.19 22.50 0.18 -0.14 16 10 C -0.15 -0.41 5.88 -20.07 -0.12 -0.53 16 11 C 0.55 3.16 7.76 86.69 0.67 3.83 16 12 O -0.58 -8.15 16.34 -4.01 -0.07 -8.21 16 13 N -0.71 0.95 5.23 -466.29 -2.44 -1.49 16 14 C 0.12 -0.12 5.06 86.38 0.44 0.32 16 15 C -0.09 0.46 2.22 -10.79 -0.02 0.44 16 16 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 17 C -0.11 0.47 5.08 30.59 0.16 0.63 16 18 C -0.11 0.30 5.10 30.59 0.16 0.45 16 19 C -0.09 0.20 2.43 -10.79 -0.03 0.17 16 20 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 21 C 0.08 -0.20 6.43 71.98 0.46 0.26 16 22 O -0.60 -0.30 13.19 -148.98 -1.97 -2.26 16 23 C -0.11 0.54 5.20 30.61 0.16 0.70 16 24 C -0.11 0.51 5.21 30.61 0.16 0.67 16 25 C -0.06 0.21 9.53 22.50 0.21 0.43 16 26 C -0.15 0.54 8.57 22.36 0.19 0.73 16 27 H 0.07 -0.41 7.84 -2.39 -0.02 -0.43 16 28 H 0.04 -0.32 7.08 -2.39 -0.02 -0.34 16 29 H 0.09 -0.67 8.14 -2.38 -0.02 -0.69 16 30 H 0.09 -0.53 8.14 -2.38 -0.02 -0.55 16 31 H 0.06 -0.14 8.12 -2.39 -0.02 -0.16 16 32 H 0.04 -0.28 7.47 -2.39 -0.02 -0.30 16 33 H 0.08 0.36 7.78 -2.38 -0.02 0.34 16 34 H 0.37 0.34 8.06 -74.06 -0.60 -0.26 16 35 H -0.28 -2.70 7.11 99.48 0.71 -1.99 16 36 H -0.29 -3.25 7.11 99.48 0.71 -2.55 16 37 H 0.14 0.88 4.70 -2.91 -0.01 0.86 16 38 H 0.41 -3.12 5.67 -92.71 -0.53 -3.64 16 39 H 0.06 0.13 8.14 -2.39 -0.02 0.12 16 40 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 41 H 0.07 -0.44 7.18 -2.39 -0.02 -0.46 16 42 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 43 H 0.05 0.05 7.82 -2.39 -0.02 0.03 16 44 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 45 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 46 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 47 H 0.39 -3.01 9.12 -74.06 -0.68 -3.68 16 48 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 49 H 0.07 -0.49 8.14 -2.39 -0.02 -0.51 16 50 H 0.06 -0.17 8.14 -2.38 -0.02 -0.19 16 51 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 52 H 0.16 -1.67 6.39 -2.91 -0.02 -1.69 16 53 H 0.15 -1.20 7.01 -2.91 -0.02 -1.23 16 Total: 0.00 -18.83 411.09 -2.63 -21.46 By element: Atomic # 1 Polarization: -18.81 SS G_CDS: -0.84 Total: -19.65 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 5.23 Total: 9.64 kcal Atomic # 7 Polarization: 2.23 SS G_CDS: -5.17 Total: -2.94 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -3.92 Total: -15.32 kcal Atomic # 14 Polarization: 4.74 SS G_CDS: 2.07 Total: 6.81 kcal Total: -18.83 -2.63 -21.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14939082_13422196.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.455 kcal (2) G-P(sol) polarization free energy of solvation -18.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds