Wall clock time and date at job start Sun Mar 7 2021 02:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86303 * 109.46880 * 2 1 4 4 C 1.50701 * 109.46995 * 239.99891 * 2 1 3 5 5 C 1.32685 * 124.68611 * 300.27488 * 4 2 1 6 6 C 1.44515 * 113.09714 * 180.17882 * 5 4 2 7 7 C 1.47040 * 123.49102 * 179.80802 * 6 5 4 8 8 O 1.21656 * 120.00198 * 179.73542 * 7 6 5 9 9 N 1.34782 * 120.00447 * 359.72697 * 7 6 5 10 10 C 1.46493 * 120.00325 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47228 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47497 * 54.99778 * 11 10 9 13 13 C 1.53002 * 109.47415 * 175.00130 * 11 10 9 14 14 C 1.53000 * 109.47233 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47060 * 299.99657 * 14 13 11 16 16 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 17 17 C 1.52992 * 109.47482 * 180.02562 * 15 14 13 18 18 O 1.42900 * 109.47498 * 174.99804 * 17 15 14 19 19 C 1.52999 * 109.47317 * 59.99960 * 15 14 13 20 20 C 1.52997 * 109.47232 * 295.00003 * 11 10 9 21 21 C 1.36220 * 113.01358 * 359.53929 * 6 5 4 22 22 Cl 1.73598 * 124.60152 * 180.24214 * 21 6 5 23 23 S 1.70445 * 110.79081 * 0.24807 * 21 6 5 24 24 H 0.96697 * 114.00665 * 60.00114 * 1 2 3 25 25 H 1.09004 * 109.47113 * 120.00406 * 2 1 3 26 26 H 1.48501 * 109.99710 * 60.00168 * 3 2 1 27 27 H 1.48500 * 109.99623 * 181.31958 * 3 2 1 28 28 H 1.08002 * 123.45383 * 0.02562 * 5 4 2 29 29 H 0.97003 * 119.99405 * 0.02562 * 9 7 6 30 30 H 1.09000 * 109.47277 * 60.00341 * 10 9 7 31 31 H 1.09001 * 109.47111 * 300.00156 * 10 9 7 32 32 H 1.08992 * 109.47063 * 59.99950 * 13 11 10 33 33 H 1.09004 * 109.46733 * 299.99664 * 13 11 10 34 34 H 1.09002 * 109.47398 * 59.99826 * 14 13 11 35 35 H 1.09001 * 109.47194 * 180.02562 * 14 13 11 36 36 H 1.09001 * 109.47359 * 295.00205 * 17 15 14 37 37 H 1.09002 * 109.46906 * 55.00224 * 17 15 14 38 38 H 0.96702 * 114.00498 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.47486 * 180.02562 * 19 15 14 40 40 H 1.09002 * 109.46716 * 60.00091 * 19 15 14 41 41 H 1.09002 * 109.47153 * 299.99992 * 20 11 10 42 42 H 1.09001 * 109.47289 * 60.00075 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6644 -1.9741 -1.5346 6 6 2.2776 -2.4012 -2.7716 7 6 2.1352 -3.7572 -3.3219 8 8 2.6759 -4.0473 -4.3724 9 7 1.4057 -4.6790 -2.6626 10 6 1.2643 -6.0302 -3.2107 11 6 0.3934 -6.8714 -2.2753 12 1 -0.5588 -6.3662 -2.1132 13 6 0.1425 -8.2420 -2.9073 14 6 -0.7289 -9.0830 -1.9722 15 6 -0.0129 -9.2627 -0.6321 16 1 0.9393 -9.7680 -0.7938 17 6 -0.8839 -10.1041 0.3028 18 8 -0.1676 -10.3700 1.5104 19 6 0.2381 -7.8921 -0.0001 20 6 1.1099 -7.0510 -0.9355 21 6 2.9965 -1.4155 -3.3777 22 17 3.8503 -1.5985 -4.8781 23 16 2.9440 0.0216 -2.4628 24 1 -0.3934 0.4416 -0.7650 25 1 1.7924 -0.5139 0.8900 26 1 1.5614 2.4678 1.2085 27 1 3.5346 1.7703 -0.0321 28 1 1.0536 -2.6183 -0.9195 29 1 0.9744 -4.4477 -1.8251 30 1 2.2483 -6.4898 -3.3026 31 1 0.7950 -5.9765 -4.1930 32 1 1.0946 -8.7471 -3.0693 33 1 -0.3681 -8.1140 -3.8618 34 1 -1.6811 -8.5776 -1.8105 35 1 -0.9073 -10.0596 -2.4222 36 1 -1.7988 -9.5592 0.5355 37 1 -1.1359 -11.0457 -0.1850 38 1 -0.6603 -10.9008 2.1513 39 1 0.7486 -8.0201 0.9544 40 1 -0.7141 -7.3868 0.1616 41 1 2.0621 -7.5562 -1.0976 42 1 1.2887 -6.0746 -0.4852 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14939082_13431040.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:01:44 Heat of formation + Delta-G solvation = -107.922471 kcal Electronic energy + Delta-G solvation = -25653.590996 eV Core-core repulsion = 21751.851339 eV Total energy + Delta-G solvation = -3901.739657 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.084 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.20062 -40.05388 -38.90067 -38.01640 -37.59875 -36.94114 -35.80481 -32.83379 -31.70778 -31.62893 -28.52471 -26.88498 -25.87439 -24.25513 -23.57080 -22.17014 -21.65324 -20.93566 -20.51626 -19.40076 -18.21576 -18.03555 -17.81760 -16.85756 -16.72415 -16.32897 -16.04530 -15.96642 -15.71335 -15.52858 -15.22265 -14.86135 -14.79455 -14.64503 -14.43229 -14.30951 -14.05198 -13.86896 -13.43872 -13.09869 -12.93207 -12.80848 -12.59735 -12.50635 -12.40249 -12.15496 -12.04479 -11.90712 -11.87219 -11.40928 -11.18607 -11.07040 -10.93803 -10.77703 -10.59727 -10.21873 -9.89433 -9.64937 -5.12703 -0.64063 -0.20373 0.47025 0.71292 1.03642 1.19173 1.57580 1.90291 2.16017 2.17368 3.27851 3.30688 3.59657 3.62458 3.72745 3.75608 3.83542 3.88369 4.09474 4.17855 4.30245 4.37110 4.44721 4.45772 4.49598 4.51163 4.58522 4.66399 4.70180 4.76040 4.77175 4.82893 4.94681 4.97050 5.08974 5.15417 5.21493 5.24248 5.29852 5.37997 5.45806 5.56148 6.43081 6.70557 6.88547 7.12116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.019 4.019 3 Si 0.712 3.288 4 C -0.227 4.227 5 C -0.069 4.069 6 C -0.167 4.167 7 C 0.567 3.433 8 O -0.562 6.562 9 N -0.708 5.708 10 C 0.127 3.873 11 C -0.087 4.087 12 H 0.092 0.908 13 C -0.111 4.111 14 C -0.107 4.107 15 C -0.090 4.090 16 H 0.060 0.940 17 C 0.075 3.925 18 O -0.597 6.597 19 C -0.105 4.105 20 C -0.113 4.113 21 C -0.139 4.139 22 Cl 0.003 6.997 23 S 0.266 5.734 24 H 0.399 0.601 25 H 0.134 0.866 26 H -0.265 1.265 27 H -0.261 1.261 28 H 0.178 0.822 29 H 0.413 0.587 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.395 0.605 39 H 0.054 0.946 40 H 0.069 0.931 41 H 0.053 0.947 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.778 1.690 3.227 6.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.133 4.133 3 Si 0.615 3.385 4 C -0.345 4.345 5 C -0.097 4.097 6 C -0.187 4.187 7 C 0.353 3.647 8 O -0.442 6.442 9 N -0.360 5.360 10 C 0.004 3.996 11 C -0.105 4.105 12 H 0.110 0.890 13 C -0.149 4.149 14 C -0.144 4.144 15 C -0.109 4.109 16 H 0.078 0.922 17 C -0.002 4.002 18 O -0.405 6.405 19 C -0.143 4.143 20 C -0.150 4.150 21 C -0.286 4.286 22 Cl 0.032 6.968 23 S 0.531 5.469 24 H 0.249 0.751 25 H 0.151 0.849 26 H -0.190 1.190 27 H -0.186 1.186 28 H 0.195 0.805 29 H 0.250 0.750 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.244 0.756 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.685 3.522 2.814 5.822 hybrid contribution -0.693 -2.448 0.569 2.607 sum -4.378 1.074 3.383 5.636 Atomic orbital electron populations 1.86513 1.16065 1.81982 1.50487 1.24445 0.85569 1.08819 0.94455 0.94293 0.79845 0.75938 0.88455 1.24961 1.07190 0.99203 1.03152 1.21104 0.99336 0.95478 0.93829 1.20338 1.04979 0.94843 0.98515 1.17711 0.78757 0.84359 0.83831 1.90857 1.48479 1.80952 1.23895 1.45747 1.52027 1.11603 1.26667 1.21422 1.00044 0.80865 0.97295 1.21341 0.99000 0.95918 0.94277 0.89023 1.21475 1.00421 0.94216 0.98757 1.21462 0.98817 1.00569 0.93589 1.21183 0.99030 0.95991 0.94682 0.92164 1.22320 0.94221 0.98473 0.85190 1.86434 1.47312 1.76711 1.30023 1.21463 1.00201 0.94617 0.97986 1.21606 0.98425 1.00236 0.94764 1.25798 1.03724 1.02522 0.96581 1.98425 1.73877 1.97291 1.27241 1.83221 1.46343 1.07017 1.10285 0.75088 0.84946 1.19035 1.18625 0.80470 0.74968 0.92598 0.91821 0.92132 0.90678 0.90668 0.91150 0.92649 0.93093 0.75579 0.92748 0.91196 0.92843 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 3.31 12.84 -148.98 -1.91 1.40 16 2 C -0.02 0.12 2.95 71.24 0.21 0.33 16 3 Si 0.71 -4.04 30.91 68.60 2.12 -1.92 16 4 C -0.23 0.96 5.68 24.52 0.14 1.10 16 5 C -0.07 0.21 9.71 22.70 0.22 0.43 16 6 C -0.17 -0.56 5.98 -19.84 -0.12 -0.68 16 7 C 0.57 3.93 7.79 86.55 0.67 4.60 16 8 O -0.56 -8.40 14.91 -4.21 -0.06 -8.46 16 9 N -0.71 -0.11 5.26 -466.74 -2.46 -2.57 16 10 C 0.13 0.04 5.06 86.38 0.44 0.47 16 11 C -0.09 0.35 2.22 -10.79 -0.02 0.33 16 12 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 13 C -0.11 0.41 5.20 30.60 0.16 0.56 16 14 C -0.11 0.45 5.20 30.59 0.16 0.61 16 15 C -0.09 0.12 2.43 -10.80 -0.03 0.10 16 16 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 17 C 0.08 -0.14 6.43 71.98 0.46 0.32 16 18 O -0.60 -0.70 13.20 -148.98 -1.97 -2.66 16 19 C -0.11 0.17 5.10 30.61 0.16 0.33 16 20 C -0.11 0.32 5.08 30.61 0.16 0.47 16 21 C -0.14 -0.62 6.87 67.35 0.46 -0.16 16 22 Cl 0.00 0.02 27.20 -2.72 -0.07 -0.05 16 23 S 0.27 -0.56 20.17 -56.49 -1.14 -1.70 16 24 H 0.40 -5.35 8.70 -74.06 -0.64 -5.99 16 25 H 0.13 -0.89 7.96 -2.39 -0.02 -0.91 16 26 H -0.27 -0.18 7.11 99.48 0.71 0.53 16 27 H -0.26 0.29 7.11 99.48 0.71 1.00 16 28 H 0.18 -1.40 7.10 -2.91 -0.02 -1.42 16 29 H 0.41 -2.28 6.20 -92.71 -0.57 -2.86 16 30 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 33 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 34 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 35 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 36 H 0.06 -0.23 8.14 -2.39 -0.02 -0.24 16 37 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.39 -2.77 9.12 -74.06 -0.68 -3.44 16 39 H 0.05 0.11 7.82 -2.39 -0.02 0.09 16 40 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 41 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 42 H 0.07 -0.31 7.18 -2.39 -0.02 -0.33 16 Total: 0.00 -19.37 366.19 -3.21 -22.59 By element: Atomic # 1 Polarization: -14.66 SS G_CDS: -0.79 Total: -15.45 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 3.07 Total: 8.83 kcal Atomic # 7 Polarization: -0.11 SS G_CDS: -2.46 Total: -2.57 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -3.94 Total: -9.72 kcal Atomic # 14 Polarization: -4.04 SS G_CDS: 2.12 Total: -1.92 kcal Atomic # 16 Polarization: -0.56 SS G_CDS: -1.14 Total: -1.70 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -0.07 Total: -0.05 kcal Total: -19.37 -3.21 -22.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14939082_13431040.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.335 kcal (2) G-P(sol) polarization free energy of solvation -19.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds