Wall clock time and date at job start Sun Mar 7 2021 02:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86299 * 109.47176 * 2 1 4 4 C 1.50703 * 109.46788 * 240.00544 * 2 1 3 5 5 C 1.31110 * 118.54730 * 119.97981 * 4 2 1 6 6 N 1.38926 * 121.84985 * 179.60984 * 5 4 2 7 7 C 1.47034 * 118.88063 * 13.32321 * 6 5 4 8 8 C 1.50704 * 109.82085 * 196.79473 * 7 6 5 9 9 O 1.21280 * 119.99632 * 18.20229 * 8 7 6 10 10 N 1.34775 * 120.00032 * 198.20537 * 8 7 6 11 11 C 1.46496 * 120.00104 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47342 * 180.02562 * 11 10 8 13 13 H 1.09007 * 109.46895 * 55.00001 * 12 11 10 14 14 C 1.52998 * 109.47197 * 175.00124 * 12 11 10 15 15 C 1.52999 * 109.46860 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47147 * 299.99580 * 15 14 12 17 17 H 1.09000 * 109.47513 * 300.00527 * 16 15 14 18 18 C 1.52999 * 109.47117 * 180.02562 * 16 15 14 19 19 O 1.42903 * 109.47256 * 175.00473 * 18 16 15 20 20 C 1.52998 * 109.46898 * 60.00444 * 16 15 14 21 21 C 1.52998 * 109.47110 * 295.00289 * 12 11 10 22 22 C 1.53546 * 107.65522 * 316.32993 * 7 6 5 23 23 C 1.50209 * 118.54570 * 299.99665 * 4 2 1 24 24 H 0.96699 * 114.00019 * 59.99548 * 1 2 3 25 25 H 1.08998 * 109.47143 * 120.00872 * 2 1 3 26 26 H 1.48506 * 109.99724 * 60.00423 * 3 2 1 27 27 H 1.48502 * 109.99789 * 181.31726 * 3 2 1 28 28 H 1.08005 * 119.07961 * 359.63972 * 5 4 2 29 29 H 0.96996 * 120.56228 * 193.33521 * 6 5 4 30 30 H 1.08997 * 109.87876 * 75.90319 * 7 6 5 31 31 H 0.97003 * 119.99572 * 359.97438 * 10 8 7 32 32 H 1.09000 * 109.47063 * 60.00171 * 11 10 8 33 33 H 1.09005 * 109.47060 * 300.00259 * 11 10 8 34 34 H 1.08994 * 109.47318 * 59.99874 * 14 12 11 35 35 H 1.09002 * 109.47117 * 299.99807 * 14 12 11 36 36 H 1.09004 * 109.46910 * 180.02562 * 15 14 12 37 37 H 1.09003 * 109.47848 * 60.00170 * 15 14 12 38 38 H 1.08997 * 109.47286 * 55.00033 * 18 16 15 39 39 H 1.09008 * 109.47201 * 294.99814 * 18 16 15 40 40 H 0.96700 * 114.00311 * 180.02562 * 19 18 16 41 41 H 1.08994 * 109.47318 * 60.00029 * 20 16 15 42 42 H 1.09002 * 109.47117 * 180.02562 * 20 16 15 43 43 H 1.09007 * 109.47007 * 299.99643 * 21 12 11 44 44 H 1.08996 * 109.47207 * 59.99604 * 21 12 11 45 45 H 1.09001 * 109.61810 * 180.67406 * 22 7 6 46 46 H 1.08998 * 109.62010 * 301.03963 * 22 7 6 47 47 H 1.08999 * 109.32663 * 79.77506 * 23 4 2 48 48 H 1.08994 * 109.32738 * 320.29282 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7103 -1.2306 5 6 2.6826 -0.0458 -2.0748 6 7 3.1892 -0.6351 -3.2264 7 6 2.6444 -1.9301 -3.6600 8 6 3.5806 -2.5723 -4.6511 9 8 4.7319 -2.1986 -4.7277 10 7 3.1385 -3.5618 -5.4523 11 6 4.0485 -4.1857 -6.4161 12 6 3.3014 -5.2706 -7.1943 13 1 2.4107 -4.8408 -7.6528 14 6 4.2139 -5.8361 -8.2845 15 6 3.4666 -6.9206 -9.0631 16 6 3.0567 -8.0434 -8.1080 17 1 3.9471 -8.4735 -7.6495 18 6 2.3099 -9.1282 -8.8868 19 8 2.0293 -10.2291 -8.0200 20 6 2.1442 -7.4779 -7.0179 21 6 2.8920 -6.3932 -6.2389 22 6 2.5130 -2.8201 -2.4158 23 6 1.5485 -2.1483 -1.4358 24 1 -0.3933 0.4418 -0.7650 25 1 1.7923 -0.5140 0.8899 26 1 1.5615 2.4678 1.2086 27 1 3.5346 1.7702 -0.0321 28 1 2.9148 0.9888 -1.8690 29 1 3.8905 -0.1997 -3.7358 30 1 1.6652 -1.7861 -4.1166 31 1 2.2178 -3.8608 -5.3907 32 1 4.8892 -4.6324 -5.8854 33 1 4.4169 -3.4298 -7.1098 34 1 5.1045 -6.2658 -7.8261 35 1 4.5055 -5.0363 -8.9652 36 1 4.1168 -7.3238 -9.8395 37 1 2.5761 -6.4905 -9.5217 38 1 2.9270 -9.4685 -9.7183 39 1 1.3747 -8.7209 -9.2712 40 1 1.5564 -10.9560 -8.4479 41 1 1.2538 -7.0478 -7.4763 42 1 1.8526 -8.2777 -6.3372 43 1 3.7827 -6.8231 -5.7804 44 1 2.2420 -5.9904 -5.4622 45 1 2.1216 -3.7960 -2.7035 46 1 3.4898 -2.9411 -1.9475 47 1 0.5355 -2.1985 -1.8350 48 1 1.5832 -2.6708 -0.4799 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14939082_15413834.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:01:55 Heat of formation + Delta-G solvation = -122.403577 kcal Electronic energy + Delta-G solvation = -26302.143649 eV Core-core repulsion = 22550.374722 eV Total energy + Delta-G solvation = -3751.768927 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.45391 -40.20660 -39.40447 -37.66637 -37.29946 -35.85663 -33.41590 -33.16801 -32.41663 -31.69576 -28.62962 -27.07232 -25.38986 -24.64938 -23.82889 -23.41500 -21.73297 -21.60012 -20.72680 -19.33907 -19.10208 -18.21958 -17.96909 -17.25420 -16.77469 -16.60152 -16.25047 -16.03410 -15.77992 -15.74522 -15.30916 -15.20351 -15.04756 -14.80193 -14.54998 -14.45654 -14.17102 -14.06284 -13.80264 -13.45291 -13.09171 -13.01072 -12.93024 -12.80545 -12.50953 -12.21361 -12.04233 -11.95339 -11.89790 -11.85973 -11.40429 -11.25486 -11.17819 -11.06682 -10.87840 -10.76736 -10.18479 -10.14896 -8.44711 -5.00410 1.32128 1.41792 1.48038 1.62660 1.92292 1.99996 2.64979 3.30857 3.54306 3.63328 3.68110 3.74034 3.77182 3.82021 3.88332 4.03673 4.10179 4.18420 4.30514 4.33159 4.44334 4.46109 4.49995 4.51088 4.59277 4.62209 4.65224 4.66174 4.70071 4.76261 4.77615 4.81747 4.96329 5.01329 5.09508 5.16063 5.21549 5.23343 5.24694 5.28710 5.31341 5.37709 5.46494 5.56563 5.57567 6.24674 6.45614 6.81489 6.88457 6.96449 7.10193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.046 4.046 3 Si 0.760 3.240 4 C -0.288 4.288 5 C 0.141 3.859 6 N -0.738 5.738 7 C 0.140 3.860 8 C 0.510 3.490 9 O -0.578 6.578 10 N -0.709 5.709 11 C 0.126 3.874 12 C -0.087 4.087 13 H 0.093 0.907 14 C -0.112 4.112 15 C -0.107 4.107 16 C -0.091 4.091 17 H 0.059 0.941 18 C 0.075 3.925 19 O -0.597 6.597 20 C -0.106 4.106 21 C -0.113 4.113 22 C -0.123 4.123 23 C -0.049 4.049 24 H 0.392 0.608 25 H 0.089 0.911 26 H -0.307 1.307 27 H -0.295 1.295 28 H 0.143 0.857 29 H 0.407 0.593 30 H 0.119 0.881 31 H 0.417 0.583 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.395 0.605 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.074 0.926 45 H 0.099 0.901 46 H 0.050 0.950 47 H 0.082 0.918 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.059 -1.364 -6.961 8.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.157 4.157 3 Si 0.669 3.331 4 C -0.298 4.298 5 C 0.020 3.980 6 N -0.370 5.370 7 C 0.032 3.968 8 C 0.296 3.704 9 O -0.457 6.457 10 N -0.361 5.361 11 C 0.002 3.998 12 C -0.105 4.105 13 H 0.112 0.888 14 C -0.150 4.150 15 C -0.145 4.145 16 C -0.109 4.109 17 H 0.077 0.923 18 C -0.002 4.002 19 O -0.405 6.405 20 C -0.144 4.144 21 C -0.150 4.150 22 C -0.162 4.162 23 C -0.087 4.087 24 H 0.242 0.758 25 H 0.107 0.893 26 H -0.235 1.235 27 H -0.223 1.223 28 H 0.160 0.840 29 H 0.243 0.757 30 H 0.136 0.864 31 H 0.255 0.745 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.244 0.756 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.092 0.908 45 H 0.117 0.883 46 H 0.069 0.931 47 H 0.100 0.900 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.446 -0.573 -5.691 6.678 hybrid contribution 0.185 -1.001 -0.075 1.021 sum -3.261 -1.574 -5.767 6.809 Atomic orbital electron populations 1.86426 1.17999 1.82081 1.50474 1.24739 0.84817 1.08753 0.97423 0.94214 0.77341 0.76630 0.84915 1.20996 1.11636 0.97772 0.99422 1.20482 0.94976 0.96060 0.86453 1.44390 1.43774 1.21081 1.27798 1.21104 0.96512 0.85219 0.94008 1.20920 0.88207 0.80005 0.81254 1.90723 1.20617 1.64021 1.70366 1.45852 1.15939 1.36607 1.37730 1.21405 0.92516 0.95093 0.90783 1.21342 0.99308 0.94177 0.95708 0.88844 1.21480 0.98004 0.98400 0.97073 1.21463 1.00889 0.94850 0.97265 1.21187 0.98425 0.94658 0.96653 0.92255 1.22327 0.98926 0.87041 0.91944 1.86434 1.80832 1.31272 1.41968 1.21469 0.98104 0.97628 0.97153 1.21611 1.00246 0.95470 0.97708 1.21842 1.00492 0.98992 0.94846 1.19900 0.98694 0.91478 0.98582 0.75804 0.89338 1.23529 1.22291 0.84026 0.75687 0.86400 0.74499 0.92866 0.91907 0.92275 0.90723 0.91305 0.90619 0.93193 0.92613 0.75577 0.91117 0.92758 0.92957 0.90751 0.88252 0.93096 0.89997 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.64 12.78 -148.98 -1.90 -2.54 16 2 C -0.05 -0.05 2.83 71.24 0.20 0.15 16 3 Si 0.76 -0.15 29.68 68.60 2.04 1.88 16 4 C -0.29 -0.03 5.44 -16.75 -0.09 -0.12 16 5 C 0.14 -0.09 9.63 83.42 0.80 0.71 16 6 N -0.74 -0.14 5.47 -328.98 -1.80 -1.93 16 7 C 0.14 -0.34 3.36 44.33 0.15 -0.20 16 8 C 0.51 0.72 7.10 87.66 0.62 1.34 16 9 O -0.58 -6.20 16.06 -3.03 -0.05 -6.25 16 10 N -0.71 3.06 5.28 -463.06 -2.45 0.61 16 11 C 0.13 -0.32 5.06 86.38 0.44 0.11 16 12 C -0.09 0.54 2.22 -10.80 -0.02 0.52 16 13 H 0.09 -0.79 8.14 -2.38 -0.02 -0.81 16 14 C -0.11 0.57 5.20 30.59 0.16 0.73 16 15 C -0.11 0.58 5.20 30.59 0.16 0.73 16 16 C -0.09 0.22 2.43 -10.80 -0.03 0.19 16 17 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 18 C 0.08 -0.20 6.43 71.98 0.46 0.26 16 19 O -0.60 -0.30 13.20 -148.98 -1.97 -2.26 16 20 C -0.11 0.33 5.10 30.61 0.16 0.49 16 21 C -0.11 0.55 5.08 30.61 0.16 0.71 16 22 C -0.12 0.25 5.47 30.79 0.17 0.42 16 23 C -0.05 0.05 5.75 29.70 0.17 0.22 16 24 H 0.39 -2.89 8.70 -74.06 -0.64 -3.54 16 25 H 0.09 0.34 7.96 -2.39 -0.02 0.32 16 26 H -0.31 -2.43 7.11 99.48 0.71 -1.73 16 27 H -0.29 -1.55 7.10 99.48 0.71 -0.85 16 28 H 0.14 -0.51 4.37 -2.91 -0.01 -0.52 16 29 H 0.41 0.54 8.08 -92.71 -0.75 -0.21 16 30 H 0.12 -0.88 8.14 -2.39 -0.02 -0.90 16 31 H 0.42 -4.28 7.65 -92.71 -0.71 -4.99 16 32 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.06 -0.03 8.14 -2.38 -0.02 -0.05 16 34 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 35 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 36 H 0.07 -0.37 8.14 -2.38 -0.02 -0.39 16 37 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 38 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.06 -0.27 8.14 -2.38 -0.02 -0.29 16 40 H 0.39 -3.00 9.12 -74.06 -0.68 -3.67 16 41 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 42 H 0.05 0.04 7.82 -2.39 -0.02 0.02 16 43 H 0.05 -0.09 8.14 -2.38 -0.02 -0.11 16 44 H 0.07 -0.54 7.18 -2.39 -0.02 -0.56 16 45 H 0.10 -0.64 8.14 -2.39 -0.02 -0.66 16 46 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 47 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 48 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 Total: 0.00 -20.53 372.29 -4.39 -24.92 By element: Atomic # 1 Polarization: -18.93 SS G_CDS: -1.76 Total: -20.69 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 3.50 Total: 6.28 kcal Atomic # 7 Polarization: 2.92 SS G_CDS: -4.25 Total: -1.32 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -3.92 Total: -11.06 kcal Atomic # 14 Polarization: -0.15 SS G_CDS: 2.04 Total: 1.88 kcal Total: -20.53 -4.39 -24.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14939082_15413834.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.487 kcal (2) G-P(sol) polarization free energy of solvation -20.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds