Wall clock time and date at job start Sun Mar 7 2021 02:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86301 * 109.46875 * 2 1 4 4 C 1.50698 * 109.46831 * 119.99719 * 2 1 3 5 5 C 1.31108 * 118.54814 * 249.97719 * 4 2 1 6 6 N 1.38927 * 121.85134 * 180.42912 * 5 4 2 7 7 C 1.47029 * 118.88385 * 346.69001 * 6 5 4 8 8 C 1.53543 * 107.65699 * 43.65936 * 7 6 5 9 9 C 1.50205 * 118.54502 * 70.00526 * 4 2 1 10 10 C 1.50698 * 109.33051 * 39.66254 * 9 4 2 11 11 O 1.21279 * 119.99961 * 120.86740 * 10 9 4 12 12 N 1.34777 * 119.99836 * 300.86239 * 10 9 4 13 13 C 1.46498 * 119.99649 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.47099 * 180.02562 * 13 12 10 15 15 H 1.09000 * 109.46866 * 304.99967 * 14 13 12 16 16 C 1.52997 * 109.46974 * 64.99742 * 14 13 12 17 17 C 1.52996 * 109.47165 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.46972 * 300.00293 * 17 16 14 19 19 H 1.09000 * 109.46986 * 299.99742 * 18 17 16 20 20 C 1.52996 * 109.47346 * 179.97438 * 18 17 16 21 21 O 1.42903 * 109.47094 * 64.99836 * 20 18 17 22 22 C 1.52997 * 109.47415 * 59.99860 * 18 17 16 23 23 C 1.52999 * 109.47000 * 185.00152 * 14 13 12 24 24 H 0.96700 * 114.00189 * 299.99939 * 1 2 3 25 25 H 1.08995 * 109.47192 * 239.99582 * 2 1 3 26 26 H 1.48498 * 110.00162 * 299.99817 * 3 2 1 27 27 H 1.48494 * 109.99964 * 61.31886 * 3 2 1 28 28 H 1.08006 * 119.07740 * 0.42944 * 5 4 2 29 29 H 0.96999 * 120.56454 * 166.65966 * 6 5 4 30 30 H 1.09007 * 109.82103 * 284.12240 * 7 6 5 31 31 H 1.08993 * 109.87933 * 163.22950 * 7 6 5 32 32 H 1.09007 * 109.62145 * 179.32813 * 8 7 6 33 33 H 1.08997 * 109.77794 * 58.86888 * 8 7 6 34 34 H 1.09001 * 109.19005 * 280.09189 * 9 4 2 35 35 H 0.96998 * 120.00041 * 359.97438 * 12 10 9 36 36 H 1.09006 * 109.47554 * 59.99901 * 13 12 10 37 37 H 1.08998 * 109.47209 * 300.00061 * 13 12 10 38 38 H 1.09000 * 109.47140 * 60.00393 * 16 14 13 39 39 H 1.09001 * 109.47375 * 300.00376 * 16 14 13 40 40 H 1.08992 * 109.47534 * 180.02562 * 17 16 14 41 41 H 1.08996 * 109.47134 * 59.99508 * 17 16 14 42 42 H 1.08998 * 109.47622 * 184.99440 * 20 18 17 43 43 H 1.09001 * 109.47244 * 305.00138 * 20 18 17 44 44 H 0.96699 * 114.00071 * 180.02562 * 21 20 18 45 45 H 1.09001 * 109.46922 * 180.02562 * 22 18 17 46 46 H 1.09000 * 109.47140 * 59.99976 * 22 18 17 47 47 H 1.08993 * 109.47839 * 60.00073 * 23 14 13 48 48 H 1.09000 * 109.47160 * 299.99635 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.5119 -0.0029 2.1693 6 7 3.0078 -0.5881 3.3275 7 6 2.6238 -1.9715 3.6448 8 6 2.7181 -2.7898 2.3491 9 6 1.7451 -2.1977 1.3269 10 6 1.9983 -2.8206 -0.0218 11 8 2.8697 -3.6542 -0.1508 12 7 1.2563 -2.4512 -1.0846 13 6 1.5021 -3.0572 -2.3956 14 6 0.5314 -2.4668 -3.4204 15 1 -0.4918 -2.5949 -3.0673 16 6 0.8255 -0.9763 -3.6017 17 6 -0.1455 -0.3858 -4.6260 18 6 0.0254 -1.1061 -5.9650 19 1 1.0485 -0.9780 -6.3184 20 6 -0.9461 -0.5160 -6.9892 21 8 -0.5986 0.8462 -7.2456 22 6 -0.2687 -2.5965 -5.7837 23 6 0.7029 -3.1872 -4.7592 24 1 -0.3933 0.4417 0.7650 25 1 1.7923 -0.5139 -0.8899 26 1 1.5614 2.4679 -1.2085 27 1 1.5878 2.4585 1.2242 28 1 2.6073 1.0650 2.0385 29 1 3.5978 -0.0927 3.9169 30 1 1.6015 -1.9939 4.0225 31 1 3.3027 -2.3826 4.3918 32 1 2.4506 -3.8271 2.5509 33 1 3.7340 -2.7437 1.9568 34 1 0.7221 -2.4114 1.6367 35 1 0.5591 -1.7848 -0.9813 36 1 1.3523 -4.1350 -2.3316 37 1 2.5266 -2.8505 -2.7050 38 1 1.8488 -0.8483 -3.9548 39 1 0.7034 -0.4632 -2.6479 40 1 0.0643 0.6759 -4.7556 41 1 -1.1686 -0.5139 -4.2726 42 1 -0.8876 -1.0865 -7.9161 43 1 -1.9617 -0.5641 -6.5963 44 1 -1.1740 1.2849 -7.8870 45 1 -0.1465 -3.1096 -6.7376 46 1 -1.2919 -2.7246 -5.4302 47 1 0.4934 -4.2489 -4.6301 48 1 1.7262 -3.0591 -5.1123 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14939082_15608500.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:01:58 Heat of formation + Delta-G solvation = -110.201300 kcal Electronic energy + Delta-G solvation = -27822.311225 eV Core-core repulsion = 24071.071428 eV Total energy + Delta-G solvation = -3751.239797 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.64643 -40.17919 -39.19466 -37.89192 -37.49400 -35.72085 -33.68918 -32.77425 -32.44925 -31.72777 -28.43088 -27.18628 -25.91387 -24.34923 -23.75871 -23.17824 -21.69318 -21.62309 -20.76278 -19.37040 -18.98295 -18.23835 -18.09467 -17.36817 -17.11408 -16.64173 -16.29557 -15.94114 -15.91746 -15.65455 -15.38775 -15.09222 -14.93173 -14.73244 -14.57458 -14.52171 -14.14843 -14.03497 -13.65481 -13.40152 -13.21055 -13.06750 -12.83636 -12.67274 -12.51015 -12.27739 -12.07061 -11.96874 -11.89919 -11.66424 -11.42907 -11.38642 -11.16536 -11.08432 -10.81101 -10.74708 -10.44184 -9.93729 -8.45981 -4.91346 1.23172 1.33242 1.53154 1.72126 1.96003 2.32260 2.65937 3.29204 3.38245 3.62177 3.68236 3.71624 3.74206 3.84664 3.95922 4.09376 4.16211 4.22750 4.29177 4.31239 4.38495 4.41946 4.47268 4.48666 4.56127 4.58222 4.65458 4.67433 4.69577 4.75978 4.78776 4.80593 4.87620 4.95004 5.07276 5.14467 5.19138 5.19921 5.22508 5.27595 5.30886 5.42294 5.43730 5.47720 5.55252 6.29953 6.49858 6.69065 6.87387 6.96344 7.27087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.077 4.077 3 Si 0.734 3.266 4 C -0.295 4.295 5 C 0.161 3.839 6 N -0.744 5.744 7 C 0.123 3.877 8 C -0.119 4.119 9 C -0.034 4.034 10 C 0.519 3.481 11 O -0.585 6.585 12 N -0.722 5.722 13 C 0.119 3.881 14 C -0.087 4.087 15 H 0.080 0.920 16 C -0.116 4.116 17 C -0.104 4.104 18 C -0.089 4.089 19 H 0.065 0.935 20 C 0.076 3.924 21 O -0.596 6.596 22 C -0.107 4.107 23 C -0.109 4.109 24 H 0.389 0.611 25 H 0.113 0.887 26 H -0.304 1.304 27 H -0.269 1.269 28 H 0.148 0.852 29 H 0.414 0.586 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.419 0.581 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.395 0.605 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.074 0.926 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.768 2.174 2.274 3.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.187 4.187 3 Si 0.640 3.360 4 C -0.306 4.306 5 C 0.038 3.962 6 N -0.374 5.374 7 C -0.002 4.002 8 C -0.158 4.158 9 C -0.055 4.055 10 C 0.307 3.693 11 O -0.465 6.465 12 N -0.379 5.379 13 C -0.005 4.005 14 C -0.106 4.106 15 H 0.098 0.902 16 C -0.154 4.154 17 C -0.142 4.142 18 C -0.107 4.107 19 H 0.084 0.916 20 C -0.002 4.002 21 O -0.404 6.404 22 C -0.144 4.144 23 C -0.147 4.147 24 H 0.240 0.760 25 H 0.131 0.869 26 H -0.232 1.232 27 H -0.195 1.195 28 H 0.165 0.835 29 H 0.251 0.749 30 H 0.086 0.914 31 H 0.119 0.881 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.118 0.882 35 H 0.260 0.740 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.244 0.756 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.883 1.842 2.103 2.932 hybrid contribution -1.611 0.387 0.078 1.658 sum -2.494 2.229 2.182 3.993 Atomic orbital electron populations 1.86384 1.18491 1.80273 1.50654 1.25151 0.83713 1.10609 0.99236 0.94270 0.91358 0.73432 0.76916 1.20367 1.17382 0.93364 0.99463 1.20689 0.92223 0.97040 0.86286 1.44675 1.53895 1.14598 1.24222 1.21667 1.01414 0.81229 0.95860 1.21689 0.99294 0.99514 0.95308 1.19659 1.01495 0.93068 0.91262 1.21016 0.80393 0.80897 0.87019 1.90670 1.34506 1.35149 1.86208 1.46647 1.38333 1.44347 1.08565 1.21442 0.99445 0.97400 0.82220 1.21319 0.99173 0.95204 0.94914 0.90207 1.21647 0.99655 0.94827 0.99236 1.21427 0.99441 0.99063 0.94241 1.21177 0.99525 0.95267 0.94738 0.91618 1.22314 0.97652 0.82190 0.97995 1.86439 1.60507 1.26187 1.67276 1.21474 0.99904 0.93420 0.99643 1.21484 1.00177 0.99691 0.93345 0.76031 0.86930 1.23235 1.19548 0.83523 0.74917 0.91409 0.88143 0.90621 0.92092 0.88232 0.73967 0.92217 0.92197 0.92055 0.91855 0.92917 0.91931 0.92726 0.92973 0.75599 0.90709 0.91110 0.90692 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.68 11.40 -148.98 -1.70 -1.02 16 2 C -0.08 0.05 1.53 71.24 0.11 0.16 16 3 Si 0.73 -1.21 29.97 68.60 2.06 0.84 16 4 C -0.29 0.15 5.03 -16.75 -0.08 0.07 16 5 C 0.16 -0.51 9.61 83.42 0.80 0.29 16 6 N -0.74 3.66 5.83 -345.89 -2.02 1.65 16 7 C 0.12 -0.52 7.16 86.46 0.62 0.10 16 8 C -0.12 -0.20 4.91 30.79 0.15 -0.05 16 9 C -0.03 -0.08 2.75 -12.43 -0.03 -0.12 16 10 C 0.52 4.21 6.85 87.66 0.60 4.81 16 11 O -0.58 -9.32 15.80 -3.03 -0.05 -9.37 16 12 N -0.72 -3.18 3.59 -463.05 -1.66 -4.85 16 13 C 0.12 0.45 5.06 86.38 0.44 0.89 16 14 C -0.09 -0.01 2.22 -10.79 -0.02 -0.04 16 15 H 0.08 0.00 8.14 -2.39 -0.02 -0.02 16 16 C -0.12 -0.18 5.08 30.59 0.16 -0.03 16 17 C -0.10 -0.24 5.10 30.59 0.16 -0.09 16 18 C -0.09 -0.08 2.43 -10.80 -0.03 -0.10 16 19 H 0.07 0.22 8.14 -2.39 -0.02 0.21 16 20 C 0.08 -0.01 6.43 71.98 0.46 0.46 16 21 O -0.60 -1.67 13.19 -148.98 -1.97 -3.64 16 22 C -0.11 0.22 5.20 30.61 0.16 0.38 16 23 C -0.11 0.14 5.21 30.61 0.16 0.30 16 24 H 0.39 -2.62 8.70 -74.06 -0.64 -3.26 16 25 H 0.11 0.18 4.16 -2.39 -0.01 0.17 16 26 H -0.30 -2.05 7.11 99.48 0.71 -1.34 16 27 H -0.27 0.07 6.82 99.48 0.68 0.75 16 28 H 0.15 -0.92 4.31 -2.91 -0.01 -0.94 16 29 H 0.41 -3.74 8.96 -92.71 -0.83 -4.57 16 30 H 0.07 -0.34 8.14 -2.38 -0.02 -0.36 16 31 H 0.10 -0.74 8.14 -2.39 -0.02 -0.76 16 32 H 0.08 0.16 8.14 -2.38 -0.02 0.15 16 33 H 0.06 0.38 7.76 -2.39 -0.02 0.36 16 34 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 35 H 0.42 1.01 4.23 -92.71 -0.39 0.62 16 36 H 0.06 0.32 8.14 -2.38 -0.02 0.30 16 37 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.06 0.16 5.90 -2.39 -0.01 0.14 16 40 H 0.05 0.31 7.82 -2.39 -0.02 0.29 16 41 H 0.06 0.11 8.14 -2.39 -0.02 0.10 16 42 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 43 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 44 H 0.39 -2.19 9.12 -74.06 -0.68 -2.87 16 45 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 46 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 47 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 48 H 0.07 -0.04 8.14 -2.39 -0.02 -0.05 16 Total: 0.00 -17.59 359.51 -3.23 -20.83 By element: Atomic # 1 Polarization: -9.93 SS G_CDS: -1.54 Total: -11.47 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 3.64 Total: 7.02 kcal Atomic # 7 Polarization: 0.48 SS G_CDS: -3.68 Total: -3.20 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -3.71 Total: -14.03 kcal Atomic # 14 Polarization: -1.21 SS G_CDS: 2.06 Total: 0.84 kcal Total: -17.59 -3.23 -20.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14939082_15608500.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.372 kcal (2) G-P(sol) polarization free energy of solvation -17.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds