Wall clock time and date at job start Sun Mar 7 2021 02:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86301 * 109.47222 * 2 1 4 4 C 1.50704 * 109.47123 * 119.99875 * 2 1 3 5 5 C 1.38250 * 119.96871 * 245.02490 * 4 2 1 6 6 C 1.38290 * 120.11062 * 180.02562 * 5 4 2 7 7 C 1.38131 * 120.04957 * 359.67603 * 6 5 4 8 8 C 1.38746 * 119.94707 * 0.59675 * 7 6 5 9 9 O 1.35900 * 120.05467 * 179.69741 * 8 7 6 10 10 C 1.42898 * 117.00172 * 359.72752 * 9 8 7 11 11 C 1.52997 * 109.47319 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 O 1.21288 * 120.00038 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00369 * 180.02562 * 12 11 10 15 15 C 1.46505 * 120.00115 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.46784 * 179.97438 * 15 14 12 17 17 H 1.08998 * 109.47101 * 55.00078 * 16 15 14 18 18 C 1.53002 * 109.46544 * 174.99644 * 16 15 14 19 19 C 1.53001 * 109.46779 * 179.97438 * 18 16 15 20 20 C 1.52991 * 109.47600 * 300.00674 * 19 18 16 21 21 H 1.09008 * 109.46753 * 299.99750 * 20 19 18 22 22 C 1.53001 * 109.47600 * 180.02562 * 20 19 18 23 23 O 1.42899 * 109.47364 * 174.99899 * 22 20 19 24 24 C 1.52997 * 109.47685 * 59.99484 * 20 19 18 25 25 C 1.52992 * 109.47321 * 294.99783 * 16 15 14 26 26 C 1.38162 * 119.97406 * 64.99928 * 4 2 1 27 27 H 0.96698 * 114.00529 * 299.99692 * 1 2 3 28 28 H 1.08996 * 109.47925 * 239.99665 * 2 1 3 29 29 H 1.48499 * 110.00183 * 178.67925 * 3 2 1 30 30 H 1.48503 * 109.99550 * 300.00031 * 3 2 1 31 31 H 1.07997 * 119.94730 * 359.97411 * 5 4 2 32 32 H 1.07993 * 119.97407 * 179.97438 * 6 5 4 33 33 H 1.08010 * 120.02317 * 180.32125 * 7 6 5 34 34 H 1.09002 * 109.47259 * 300.00149 * 10 9 8 35 35 H 1.09001 * 109.47074 * 60.00171 * 10 9 8 36 36 H 1.09002 * 109.47153 * 300.00307 * 11 10 9 37 37 H 1.08998 * 109.47533 * 59.99936 * 11 10 9 38 38 H 0.97003 * 119.99640 * 0.02562 * 14 12 11 39 39 H 1.09002 * 109.46801 * 299.99526 * 15 14 12 40 40 H 1.08992 * 109.46823 * 59.99976 * 15 14 12 41 41 H 1.09000 * 109.47280 * 300.00321 * 18 16 15 42 42 H 1.08998 * 109.47067 * 60.00413 * 18 16 15 43 43 H 1.09008 * 109.46864 * 60.00356 * 19 18 16 44 44 H 1.08998 * 109.46991 * 180.02562 * 19 18 16 45 45 H 1.09002 * 109.46783 * 294.99663 * 22 20 19 46 46 H 1.09005 * 109.46990 * 54.99798 * 22 20 19 47 47 H 0.96697 * 113.99511 * 180.02562 * 23 22 20 48 48 H 1.09008 * 109.46808 * 60.00299 * 24 20 19 49 49 H 1.09000 * 109.47820 * 180.02562 * 24 20 19 50 50 H 1.08998 * 109.47273 * 300.00189 * 25 16 15 51 51 H 1.09006 * 109.47048 * 59.99993 * 25 16 15 52 52 H 1.07998 * 120.02891 * 0.04929 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6382 -0.0114 2.1912 6 6 3.1010 -0.6605 3.3212 7 6 2.8520 -2.0079 3.4958 8 6 2.1476 -2.7128 2.5304 9 8 1.9067 -4.0399 2.6969 10 6 2.4130 -4.6468 3.8875 11 6 2.0458 -6.1320 3.8988 12 6 2.5792 -6.7719 5.1545 13 8 3.1923 -6.1055 5.9614 14 7 2.3749 -8.0846 5.3811 15 6 2.8930 -8.7066 6.6023 16 6 2.5258 -10.1918 6.6134 17 1 2.8871 -10.6623 5.6990 18 6 3.1719 -10.8677 7.8245 19 6 2.8042 -12.3529 7.8360 20 6 1.2838 -12.5013 7.9199 21 1 0.9227 -12.0305 8.8344 22 6 0.9161 -13.9864 7.9321 23 8 -0.4925 -14.1268 8.1275 24 6 0.6377 -11.8253 6.7090 25 6 1.0054 -10.3407 6.6971 26 6 1.6845 -2.0595 1.3978 27 1 -0.3934 0.4416 0.7650 28 1 1.7924 -0.5138 -0.8899 29 1 3.5346 1.7703 0.0322 30 1 1.5614 2.4678 -1.2085 31 1 2.8302 1.0430 2.0586 32 1 3.6534 -0.1124 4.0701 33 1 3.2092 -2.5133 4.3810 34 1 3.4974 -4.5400 3.9168 35 1 1.9761 -4.1582 4.7584 36 1 0.9613 -6.2383 3.8696 37 1 2.4822 -6.6209 3.0279 38 1 1.8848 -8.6177 4.7356 39 1 3.9773 -8.5998 6.6324 40 1 2.4553 -8.2179 7.4726 41 1 4.2551 -10.7616 7.7648 42 1 2.8105 -10.3973 8.7389 43 1 3.1652 -12.8237 6.9216 44 1 3.2641 -12.8343 8.6990 45 1 1.1978 -14.4382 6.9810 46 1 1.4469 -14.4854 8.7429 47 1 -0.7973 -15.0443 8.1464 48 1 0.9987 -12.2961 5.7945 49 1 -0.4456 -11.9307 6.7689 50 1 0.6440 -9.8702 7.6115 51 1 0.5451 -9.8591 5.8343 52 1 1.1325 -2.6051 0.6468 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14939082_4549614.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:02:14 Heat of formation + Delta-G solvation = -154.993973 kcal Electronic energy + Delta-G solvation = -29716.678031 eV Core-core repulsion = 25453.787316 eV Total energy + Delta-G solvation = -4262.890715 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.197 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.43465 -40.94251 -39.98190 -39.12346 -37.64905 -37.26514 -35.83428 -33.57038 -32.60462 -32.46230 -31.71629 -30.84544 -28.28175 -26.99529 -25.59350 -24.33439 -23.69878 -23.60891 -22.07352 -21.71302 -21.35153 -20.70221 -19.36526 -18.24785 -18.13927 -17.69629 -17.54316 -17.20222 -17.07404 -16.74115 -16.58962 -16.18070 -16.03514 -15.85459 -15.38991 -15.25003 -14.99375 -14.85402 -14.74875 -14.57346 -14.37826 -14.22780 -14.16692 -13.79957 -13.45893 -13.24579 -13.10420 -12.94459 -12.86072 -12.79036 -12.51775 -12.37728 -12.05450 -12.04827 -11.91423 -11.82895 -11.64124 -11.41704 -11.25721 -11.08043 -11.00214 -10.78580 -10.48687 -10.16921 -9.95877 -9.28793 -4.98105 0.18364 0.37610 1.29863 1.50125 1.65770 1.70508 1.97528 2.49458 2.65161 3.29667 3.50160 3.55328 3.62426 3.66436 3.72366 3.74893 3.83660 3.86751 3.95808 4.08208 4.09124 4.17853 4.22419 4.26160 4.29717 4.37292 4.43982 4.48542 4.49198 4.50087 4.57983 4.60885 4.64168 4.65456 4.69646 4.74147 4.76197 4.81726 4.94943 4.96314 5.08391 5.14742 5.20905 5.23348 5.24479 5.29817 5.36598 5.37817 5.42447 5.45065 5.55318 5.69187 6.30905 6.43283 6.75772 6.87346 7.12509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.078 4.078 3 Si 0.785 3.215 4 C -0.085 4.085 5 C -0.155 4.155 6 C -0.075 4.075 7 C -0.211 4.211 8 C 0.116 3.884 9 O -0.325 6.325 10 C 0.075 3.925 11 C -0.133 4.133 12 C 0.518 3.482 13 O -0.585 6.585 14 N -0.714 5.714 15 C 0.125 3.875 16 C -0.088 4.088 17 H 0.091 0.909 18 C -0.111 4.111 19 C -0.107 4.107 20 C -0.091 4.091 21 H 0.061 0.939 22 C 0.075 3.925 23 O -0.597 6.597 24 C -0.106 4.106 25 C -0.113 4.113 26 C -0.142 4.142 27 H 0.396 0.604 28 H 0.106 0.894 29 H -0.285 1.285 30 H -0.298 1.298 31 H 0.151 0.849 32 H 0.154 0.846 33 H 0.136 0.864 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.417 0.583 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.055 0.945 46 H 0.051 0.949 47 H 0.395 0.605 48 H 0.068 0.932 49 H 0.054 0.946 50 H 0.053 0.947 51 H 0.072 0.928 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.008 -3.668 1.400 3.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.187 4.187 3 Si 0.690 3.310 4 C -0.086 4.086 5 C -0.172 4.172 6 C -0.093 4.093 7 C -0.230 4.230 8 C 0.071 3.929 9 O -0.239 6.239 10 C -0.001 4.001 11 C -0.173 4.173 12 C 0.305 3.695 13 O -0.466 6.466 14 N -0.367 5.367 15 C 0.001 3.999 16 C -0.106 4.106 17 H 0.109 0.891 18 C -0.149 4.149 19 C -0.145 4.145 20 C -0.109 4.109 21 H 0.079 0.921 22 C -0.002 4.002 23 O -0.405 6.405 24 C -0.144 4.144 25 C -0.150 4.150 26 C -0.161 4.161 27 H 0.246 0.754 28 H 0.123 0.877 29 H -0.212 1.212 30 H -0.226 1.226 31 H 0.168 0.832 32 H 0.172 0.828 33 H 0.154 0.846 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.255 0.745 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.244 0.756 48 H 0.087 0.913 49 H 0.073 0.927 50 H 0.072 0.928 51 H 0.091 0.909 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.912 -2.453 0.914 2.772 hybrid contribution -0.054 -1.648 -0.133 1.654 sum 0.858 -4.101 0.781 4.262 Atomic orbital electron populations 1.86470 1.17142 1.82257 1.50450 1.25307 0.85371 1.11304 0.96766 0.93573 0.77822 0.74834 0.84733 1.20251 0.98015 0.93369 0.96916 1.21175 1.00846 1.00516 0.94702 1.21266 0.97116 0.93397 0.97500 1.21559 1.04288 0.96657 1.00512 1.19152 0.95831 0.82947 0.94991 1.85951 1.74698 1.20342 1.42897 1.22432 0.99135 0.93027 0.85492 1.21435 1.05396 0.93548 0.96887 1.20615 0.78895 0.82428 0.87518 1.90737 1.43102 1.63588 1.49160 1.45894 1.57519 1.09132 1.24120 1.21407 0.98780 0.93086 0.86619 1.21343 0.96046 0.92831 1.00407 0.89114 1.21481 1.00793 0.95160 0.97495 1.21462 0.93631 0.96434 1.02953 1.21189 0.96122 0.94398 0.99219 0.92087 1.22323 0.81177 0.96670 1.00050 1.86433 1.23918 1.33812 1.96320 1.21452 1.00083 0.95124 0.97700 1.21590 0.94851 0.96381 1.02199 1.20328 1.03970 0.94432 0.97364 0.75429 0.87661 1.21194 1.22611 0.83197 0.82823 0.84600 0.91729 0.91612 0.85628 0.85616 0.74541 0.92021 0.92604 0.90752 0.92096 0.90774 0.91198 0.92715 0.93109 0.75575 0.91308 0.92728 0.92776 0.90908 0.85577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.04 12.83 -148.98 -1.91 -2.95 16 2 C -0.08 -0.09 2.80 71.24 0.20 0.11 16 3 Si 0.78 -1.28 29.80 68.60 2.04 0.77 16 4 C -0.09 -0.21 5.35 -19.88 -0.11 -0.32 16 5 C -0.15 0.01 8.67 22.29 0.19 0.21 16 6 C -0.07 -0.03 10.04 22.26 0.22 0.19 16 7 C -0.21 -0.76 9.04 22.37 0.20 -0.56 16 8 C 0.12 0.70 6.69 22.50 0.15 0.85 16 9 O -0.32 -1.75 10.14 -92.43 -0.94 -2.69 16 10 C 0.07 0.17 4.03 71.98 0.29 0.46 16 11 C -0.13 0.40 6.07 29.85 0.18 0.58 16 12 C 0.52 0.84 7.83 87.66 0.69 1.53 16 13 O -0.59 -6.31 15.98 -3.05 -0.05 -6.36 16 14 N -0.71 2.46 5.28 -463.05 -2.45 0.01 16 15 C 0.12 -0.23 5.07 86.38 0.44 0.21 16 16 C -0.09 0.47 2.23 -10.79 -0.02 0.45 16 17 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 18 C -0.11 0.51 5.20 30.60 0.16 0.67 16 19 C -0.11 0.52 5.20 30.59 0.16 0.68 16 20 C -0.09 0.18 2.43 -10.80 -0.03 0.15 16 21 H 0.06 0.09 8.14 -2.38 -0.02 0.07 16 22 C 0.08 -0.17 6.43 71.98 0.46 0.29 16 23 O -0.60 -0.49 13.20 -148.98 -1.97 -2.46 16 24 C -0.11 0.26 5.10 30.58 0.16 0.41 16 25 C -0.11 0.47 5.07 30.58 0.16 0.62 16 26 C -0.14 -0.81 9.62 22.36 0.22 -0.60 16 27 H 0.40 -2.52 8.70 -74.06 -0.64 -3.16 16 28 H 0.11 0.26 7.96 -2.39 -0.02 0.24 16 29 H -0.29 -0.86 7.11 99.48 0.71 -0.15 16 30 H -0.30 -1.68 7.11 99.48 0.71 -0.97 16 31 H 0.15 -0.78 4.90 -2.91 -0.01 -0.80 16 32 H 0.15 -0.71 8.06 -2.91 -0.02 -0.74 16 33 H 0.14 0.30 6.30 -2.91 -0.02 0.28 16 34 H 0.06 0.23 7.63 -2.39 -0.02 0.21 16 35 H 0.07 0.22 7.61 -2.39 -0.02 0.20 16 36 H 0.13 -0.82 8.14 -2.39 -0.02 -0.83 16 37 H 0.13 -0.83 8.14 -2.39 -0.02 -0.85 16 38 H 0.42 -3.85 7.66 -92.71 -0.71 -4.55 16 39 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 40 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 41 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 42 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 43 H 0.07 -0.45 8.14 -2.38 -0.02 -0.47 16 44 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 45 H 0.05 -0.24 8.14 -2.39 -0.02 -0.26 16 46 H 0.05 -0.19 8.14 -2.38 -0.02 -0.21 16 47 H 0.39 -2.88 9.12 -74.06 -0.68 -3.55 16 48 H 0.07 -0.27 8.14 -2.38 -0.02 -0.29 16 49 H 0.05 0.07 7.82 -2.39 -0.02 0.05 16 50 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 51 H 0.07 -0.45 7.18 -2.38 -0.02 -0.47 16 52 H 0.13 0.78 8.06 -2.91 -0.02 0.76 16 Total: 0.00 -22.30 413.29 -2.61 -24.91 By element: Atomic # 1 Polarization: -16.11 SS G_CDS: -1.06 Total: -17.17 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 3.71 Total: 5.93 kcal Atomic # 7 Polarization: 2.46 SS G_CDS: -2.45 Total: 0.01 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -4.86 Total: -14.45 kcal Atomic # 14 Polarization: -1.28 SS G_CDS: 2.04 Total: 0.77 kcal Total: -22.30 -2.61 -24.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14939082_4549614.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.083 kcal (2) G-P(sol) polarization free energy of solvation -22.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds