Wall clock time and date at job start Sun Mar 7 2021 02:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35996 * 116.99926 * 2 1 4 4 C 1.39156 * 120.07569 * 179.97438 * 3 2 1 5 5 O 1.35995 * 120.06957 * 359.96146 * 4 3 2 6 6 C 1.42898 * 116.99551 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47148 * 179.97438 * 6 5 4 8 8 O 1.21288 * 119.99684 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00330 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00180 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47307 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47278 * 54.99918 * 11 10 9 13 13 C 1.53000 * 109.47260 * 175.00060 * 11 10 9 14 14 C 1.53005 * 109.47167 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47140 * 300.00281 * 14 13 11 16 16 H 1.08990 * 109.47355 * 299.99628 * 15 14 13 17 17 C 1.53000 * 109.46776 * 179.97438 * 15 14 13 18 18 O 1.42903 * 109.46726 * 174.99924 * 17 15 14 19 19 C 1.53005 * 109.47165 * 60.00136 * 15 14 13 20 20 C 1.53002 * 109.46921 * 295.00263 * 11 10 9 21 21 C 1.38564 * 119.85581 * 180.23080 * 4 3 2 22 22 C 1.38248 * 119.99334 * 359.49613 * 21 4 3 23 23 N 1.48006 * 119.92287 * 180.25255 * 22 21 4 24 24 O 1.21806 * 119.99969 * 0.25338 * 23 22 21 25 25 O 1.21800 * 120.00161 * 180.25577 * 23 22 21 26 26 C 1.38247 * 120.14962 * 0.51084 * 22 21 4 27 27 C 1.50699 * 119.92774 * 179.76780 * 26 22 21 28 28 O 1.42897 * 109.47328 * 74.97354 * 27 26 22 29 29 Si 1.86303 * 109.47218 * 194.97609 * 27 26 22 30 30 C 1.38240 * 120.14611 * 359.73886 * 26 22 21 31 31 H 1.09000 * 109.47610 * 60.00297 * 1 2 3 32 32 H 1.09007 * 109.46796 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47261 * 299.99129 * 1 2 3 34 34 H 1.09003 * 109.47290 * 59.99767 * 6 5 4 35 35 H 1.08997 * 109.47336 * 299.99992 * 6 5 4 36 36 H 0.97003 * 120.00027 * 0.02562 * 9 7 6 37 37 H 1.09003 * 109.46907 * 60.00360 * 10 9 7 38 38 H 1.08997 * 109.47453 * 300.00747 * 10 9 7 39 39 H 1.09001 * 109.46578 * 60.00310 * 13 11 10 40 40 H 1.08993 * 109.47427 * 299.99873 * 13 11 10 41 41 H 1.08994 * 109.46972 * 180.02562 * 14 13 11 42 42 H 1.09000 * 109.46692 * 60.00260 * 14 13 11 43 43 H 1.09002 * 109.47398 * 295.00168 * 17 15 14 44 44 H 1.09001 * 109.47194 * 55.00349 * 17 15 14 45 45 H 0.96700 * 113.99509 * 180.02562 * 18 17 15 46 46 H 1.09000 * 109.47443 * 59.99545 * 19 15 14 47 47 H 1.09001 * 109.47099 * 179.97438 * 19 15 14 48 48 H 1.09000 * 109.47312 * 299.99621 * 20 11 10 49 49 H 1.08998 * 109.47141 * 60.00501 * 20 11 10 50 50 H 1.07997 * 120.00485 * 179.72600 * 21 4 3 51 51 H 1.09000 * 109.46937 * 314.97312 * 27 26 22 52 52 H 0.96705 * 114.00439 * 180.02562 * 28 27 26 53 53 H 1.48494 * 109.99820 * 299.99492 * 29 27 26 54 54 H 1.48496 * 109.99909 * 61.31579 * 29 27 26 55 55 H 1.08004 * 119.99977 * 179.97438 * 30 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 3.4359 1.2864 0.0005 5 8 4.1795 0.1478 0.0019 6 6 5.6002 0.3009 0.0018 7 6 6.2519 -1.0580 0.0040 8 8 5.5670 -2.0589 0.0050 9 7 7.5957 -1.1609 0.0038 10 6 8.2292 -2.4819 0.0065 11 6 9.7504 -2.3180 0.0062 12 1 10.0485 -1.6914 0.8468 13 6 10.4113 -3.6919 0.1348 14 6 11.9326 -3.5281 0.1339 15 6 12.3740 -2.8702 -1.1750 16 1 12.0757 -3.4969 -2.0154 17 6 13.8951 -2.7058 -1.1755 18 8 14.3190 -2.1994 -2.4428 19 6 11.7130 -1.4962 -1.3035 20 6 10.1922 -1.6599 -1.3024 21 6 4.0602 2.5234 0.0054 22 6 3.3027 3.6799 -0.0009 23 7 3.9712 5.0004 -0.0013 24 8 5.1874 5.0673 -0.0009 25 8 3.3052 6.0202 -0.0021 26 6 1.9222 3.6057 -0.0013 27 6 1.1014 4.8695 -0.0028 28 8 1.1353 5.4580 -1.3046 29 14 -0.6601 4.4666 0.4508 30 6 1.2931 2.3748 -0.0009 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5137 0.8901 34 1 5.9064 0.8517 0.8911 35 1 5.9065 0.8497 -0.8888 36 1 8.1435 -0.3604 0.0026 37 1 7.9227 -3.0336 -0.8823 38 1 7.9232 -3.0298 0.8976 39 1 10.1133 -4.3185 -0.7059 40 1 10.0966 -4.1608 1.0670 41 1 12.4034 -4.5069 0.2250 42 1 12.2309 -2.9013 0.9743 43 1 14.1855 -2.0083 -0.3899 44 1 14.3651 -3.6726 -0.9950 45 1 15.2746 -2.0704 -2.5151 46 1 12.0114 -0.8695 -0.4631 47 1 12.0278 -1.0273 -2.2358 48 1 9.8942 -2.2865 -2.1430 49 1 9.7214 -0.6811 -1.3939 50 1 5.1385 2.5842 0.0103 51 1 1.5124 5.5706 0.7236 52 1 0.6272 6.2774 -1.3792 53 1 -1.2319 3.5116 -0.5321 54 1 -0.7123 3.8832 1.8154 55 1 0.2145 2.3196 -0.0008 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14939082_4549636.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:02:37 Heat of formation + Delta-G solvation = -166.212011 kcal Electronic energy + Delta-G solvation = -39737.100660 eV Core-core repulsion = 34324.024868 eV Total energy + Delta-G solvation = -5413.075793 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 411.191 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -43.46953 -42.23461 -41.18873 -40.20962 -39.62873 -39.14991 -37.82485 -37.62784 -37.14068 -35.89685 -33.13424 -32.85401 -32.59509 -31.72483 -30.22210 -29.03873 -28.00154 -27.75157 -25.85332 -24.76873 -24.00929 -23.64688 -23.16237 -21.83872 -21.65831 -20.82842 -20.74592 -19.94242 -19.59580 -18.90348 -18.75188 -18.29029 -18.24123 -18.14387 -17.87299 -17.74699 -17.07507 -16.85381 -16.58147 -16.48992 -16.07035 -15.87540 -15.84499 -15.50734 -15.17713 -15.15011 -14.85533 -14.76439 -14.63573 -14.29919 -14.19701 -14.04522 -13.87613 -13.58541 -13.48071 -13.11287 -13.02561 -12.86128 -12.72772 -12.68993 -12.55937 -12.51491 -12.45348 -12.40421 -12.22419 -12.05943 -11.92958 -11.92747 -11.42452 -11.28833 -11.09129 -11.04212 -10.79256 -10.64410 -10.27433 -10.24579 -9.62883 -5.01426 -1.41078 -0.58486 0.09922 0.21985 1.14281 1.15739 1.33458 1.56702 1.69531 1.76081 1.79895 2.27716 2.80784 3.02731 3.18034 3.29185 3.31716 3.44792 3.60369 3.71320 3.71809 3.73185 3.76542 3.78774 3.88213 3.91206 3.98397 4.06378 4.07729 4.09507 4.15771 4.21548 4.28749 4.42977 4.47277 4.48982 4.49403 4.56357 4.57283 4.59393 4.64018 4.67628 4.74693 4.77667 4.93982 5.07199 5.13921 5.17207 5.21936 5.22362 5.25426 5.32614 5.42761 5.44781 5.54514 5.87971 6.32656 6.49199 6.83640 6.87131 7.01233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.305 6.305 3 C 0.163 3.837 4 C 0.103 3.897 5 O -0.290 6.290 6 C 0.025 3.975 7 C 0.515 3.485 8 O -0.569 6.569 9 N -0.707 5.707 10 C 0.126 3.874 11 C -0.087 4.087 12 H 0.094 0.906 13 C -0.112 4.112 14 C -0.107 4.107 15 C -0.091 4.091 16 H 0.060 0.940 17 C 0.075 3.925 18 O -0.597 6.597 19 C -0.106 4.106 20 C -0.114 4.114 21 C -0.107 4.107 22 C -0.043 4.043 23 N 0.037 4.963 24 O -0.193 6.193 25 O -0.139 6.139 26 C -0.004 4.004 27 C -0.100 4.100 28 O -0.553 6.553 29 Si 0.778 3.222 30 C -0.187 4.187 31 H 0.072 0.928 32 H 0.131 0.869 33 H 0.073 0.927 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.420 0.580 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.050 0.950 45 H 0.395 0.605 46 H 0.070 0.930 47 H 0.054 0.946 48 H 0.053 0.947 49 H 0.074 0.926 50 H 0.191 0.809 51 H 0.101 0.899 52 H 0.408 0.592 53 H -0.269 1.269 54 H -0.277 1.277 55 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.075 1.779 2.971 3.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.217 6.217 3 C 0.114 3.886 4 C 0.056 3.944 5 O -0.203 6.203 6 C -0.052 4.052 7 C 0.301 3.699 8 O -0.448 6.448 9 N -0.361 5.361 10 C 0.003 3.997 11 C -0.105 4.105 12 H 0.112 0.888 13 C -0.150 4.150 14 C -0.144 4.144 15 C -0.110 4.110 16 H 0.078 0.922 17 C -0.002 4.002 18 O -0.405 6.405 19 C -0.144 4.144 20 C -0.151 4.151 21 C -0.126 4.126 22 C -0.127 4.127 23 N 0.552 4.448 24 O -0.399 6.399 25 O -0.359 6.359 26 C -0.006 4.006 27 C -0.209 4.209 28 O -0.364 6.364 29 Si 0.680 3.320 30 C -0.206 4.206 31 H 0.091 0.909 32 H 0.149 0.851 33 H 0.091 0.909 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.258 0.742 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.244 0.756 46 H 0.088 0.912 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.093 0.907 50 H 0.208 0.792 51 H 0.119 0.881 52 H 0.261 0.739 53 H -0.195 1.195 54 H -0.203 1.203 55 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.457 -1.169 2.954 3.495 hybrid contribution 1.663 0.595 -0.093 1.769 sum 0.207 -0.574 2.861 2.925 Atomic orbital electron populations 1.23678 0.75280 1.07149 1.02878 1.86313 1.24239 1.24609 1.86499 1.18664 0.89582 0.86003 0.94308 1.17885 0.88361 0.85493 1.02680 1.86301 1.18718 1.26601 1.88661 1.22963 0.78505 0.96314 1.07456 1.20282 0.83131 0.90322 0.76213 1.90785 1.64031 1.39859 1.50081 1.45705 1.05023 1.10879 1.74512 1.21447 0.92770 0.83665 1.01831 1.21351 0.91518 0.98349 0.99330 0.88757 1.21483 0.94964 0.95878 1.02643 1.21461 0.95440 1.01076 0.96471 1.21194 0.93516 0.97606 0.98646 0.92157 1.22324 0.95015 0.97861 0.85023 1.86435 1.30031 1.88150 1.35888 1.21454 0.94667 0.96250 1.01994 1.21608 0.95743 1.00996 0.96795 1.20971 1.03236 0.87945 1.00485 1.20534 0.92375 0.82772 1.17001 1.43442 1.00866 1.02975 0.97473 1.94525 0.96123 1.93938 1.55362 1.94476 1.64613 1.24823 1.52025 1.19323 0.90884 0.96165 0.94249 1.25233 1.11058 0.93375 0.91192 1.86386 1.77567 1.45396 1.27022 0.93535 0.75688 0.85875 0.76926 1.21048 1.01312 0.89518 1.08696 0.90912 0.85059 0.90851 0.85068 0.85384 0.74185 0.92534 0.91823 0.92156 0.90696 0.91226 0.90655 0.92651 0.93145 0.75573 0.91162 0.92743 0.92828 0.90744 0.79220 0.88099 0.73948 1.19518 1.20287 0.81373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.30 -1.82 10.28 -79.64 -0.82 -2.64 16 3 C 0.16 0.88 6.70 22.57 0.15 1.03 16 4 C 0.10 0.49 6.70 22.57 0.15 0.65 16 5 O -0.29 -1.89 9.45 -67.08 -0.63 -2.53 16 6 C 0.03 -0.05 5.22 71.24 0.37 0.32 16 7 C 0.51 1.76 7.91 87.66 0.69 2.45 16 8 O -0.57 -8.53 16.50 15.98 0.26 -8.27 16 9 N -0.71 2.43 5.28 -463.06 -2.45 -0.01 16 10 C 0.13 -0.20 5.06 86.38 0.44 0.23 16 11 C -0.09 0.48 2.23 -10.79 -0.02 0.46 16 12 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 13 C -0.11 0.50 5.20 30.60 0.16 0.66 16 14 C -0.11 0.51 5.20 30.60 0.16 0.67 16 15 C -0.09 0.17 2.43 -10.79 -0.03 0.14 16 16 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 17 C 0.08 -0.16 6.43 71.98 0.46 0.30 16 18 O -0.60 -0.63 13.19 -148.98 -1.97 -2.60 16 19 C -0.11 0.26 5.10 30.58 0.16 0.41 16 20 C -0.11 0.48 5.07 30.58 0.16 0.64 16 21 C -0.11 -0.26 8.54 22.35 0.19 -0.07 16 22 C -0.04 -0.26 6.85 36.38 0.25 -0.01 16 23 N 0.04 0.34 4.45 -46.46 -0.21 0.13 16 24 O -0.19 -1.99 18.44 18.88 0.35 -1.64 16 25 O -0.14 -1.34 14.62 25.10 0.37 -0.97 16 26 C 0.00 -0.02 5.29 -19.86 -0.11 -0.12 16 27 C -0.10 -0.02 1.73 71.24 0.12 0.10 16 28 O -0.55 -0.43 11.77 -129.63 -1.53 -1.96 16 29 Si 0.78 -3.86 30.19 68.60 2.07 -1.79 16 30 C -0.19 -0.58 7.65 22.35 0.17 -0.41 16 31 H 0.07 -0.32 7.66 -2.39 -0.02 -0.34 16 32 H 0.13 -0.79 8.14 -2.38 -0.02 -0.80 16 33 H 0.07 -0.38 7.67 -2.39 -0.02 -0.40 16 34 H 0.13 -1.15 7.65 -2.39 -0.02 -1.17 16 35 H 0.13 -1.03 7.68 -2.39 -0.02 -1.05 16 36 H 0.42 -4.35 7.66 -92.71 -0.71 -5.06 16 37 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 39 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 40 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 41 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 42 H 0.07 -0.47 8.14 -2.39 -0.02 -0.49 16 43 H 0.06 -0.24 8.14 -2.39 -0.02 -0.26 16 44 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 45 H 0.39 -2.78 9.12 -74.06 -0.68 -3.45 16 46 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 47 H 0.05 0.08 7.82 -2.39 -0.02 0.06 16 48 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 49 H 0.07 -0.49 7.18 -2.39 -0.02 -0.51 16 50 H 0.19 -0.65 5.85 -2.91 -0.02 -0.67 16 51 H 0.10 -0.03 6.07 -2.39 -0.01 -0.04 16 52 H 0.41 -3.81 8.74 -74.05 -0.65 -4.46 16 53 H -0.27 0.41 6.74 99.48 0.67 1.08 16 54 H -0.28 0.15 7.11 99.48 0.71 0.86 16 55 H 0.17 -0.06 3.13 -2.91 -0.01 -0.07 16 Total: 0.00 -31.54 443.23 -1.02 -32.56 By element: Atomic # 1 Polarization: -17.80 SS G_CDS: -1.06 Total: -18.85 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 4.59 Total: 8.57 kcal Atomic # 7 Polarization: 2.77 SS G_CDS: -2.65 Total: 0.12 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -3.97 Total: -20.60 kcal Atomic # 14 Polarization: -3.86 SS G_CDS: 2.07 Total: -1.79 kcal Total: -31.54 -1.02 -32.56 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14939082_4549636.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.655 kcal (2) G-P(sol) polarization free energy of solvation -31.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds