Wall clock time and date at job start Sun Mar 7 2021 02:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86298 * 109.47310 * 2 1 4 4 C 1.50703 * 109.47203 * 239.99841 * 2 1 3 5 5 C 1.38244 * 119.94435 * 120.02176 * 4 2 1 6 6 C 1.38164 * 120.05549 * 179.72932 * 5 4 2 7 7 C 1.38708 * 119.94430 * 0.52196 * 6 5 4 8 8 O 1.35901 * 120.05836 * 179.74815 * 7 6 5 9 9 C 1.42899 * 116.99988 * 359.72927 * 8 7 6 10 10 C 1.50700 * 109.47143 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99803 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99675 * 180.27800 * 10 9 8 13 13 C 1.46497 * 119.99525 * 179.72583 * 12 10 9 14 14 C 1.52999 * 109.46992 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.47090 * 54.99784 * 14 13 12 16 16 C 1.52999 * 109.47323 * 175.00101 * 14 13 12 17 17 C 1.52999 * 109.47323 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.47227 * 299.99913 * 17 16 14 19 19 H 1.09007 * 109.47232 * 299.99913 * 18 17 16 20 20 C 1.53005 * 109.47347 * 179.97438 * 18 17 16 21 21 O 1.42895 * 109.46888 * 174.99923 * 20 18 17 22 22 C 1.53005 * 109.47365 * 59.99951 * 18 17 16 23 23 C 1.53005 * 109.47116 * 294.99847 * 14 13 12 24 24 C 1.38755 * 119.88691 * 359.48177 * 7 6 5 25 25 N 1.48002 * 120.03008 * 180.23018 * 24 7 6 26 26 O 1.21798 * 120.00206 * 179.97438 * 25 24 7 27 27 O 1.21807 * 119.99946 * 359.97438 * 25 24 7 28 28 C 1.38126 * 119.94520 * 0.24370 * 24 7 6 29 29 H 0.96704 * 113.99657 * 59.99743 * 1 2 3 30 30 H 1.09005 * 109.47417 * 119.99590 * 2 1 3 31 31 H 1.48510 * 109.99986 * 298.68146 * 3 2 1 32 32 H 1.48502 * 110.00089 * 59.99686 * 3 2 1 33 33 H 1.07998 * 119.97421 * 359.97425 * 5 4 2 34 34 H 1.07999 * 120.03109 * 180.25858 * 6 5 4 35 35 H 1.09009 * 109.46798 * 59.99543 * 9 8 7 36 36 H 1.08998 * 109.46844 * 300.00048 * 9 8 7 37 37 H 0.97000 * 119.99894 * 359.71837 * 12 10 9 38 38 H 1.08995 * 109.47421 * 299.99467 * 13 12 10 39 39 H 1.09001 * 109.47621 * 60.00103 * 13 12 10 40 40 H 1.08998 * 109.47063 * 300.00207 * 16 14 13 41 41 H 1.08999 * 109.47296 * 59.99809 * 16 14 13 42 42 H 1.08999 * 109.47090 * 59.99683 * 17 16 14 43 43 H 1.09001 * 109.47114 * 179.97438 * 17 16 14 44 44 H 1.08991 * 109.46855 * 294.99902 * 20 18 17 45 45 H 1.08996 * 109.46830 * 55.00150 * 20 18 17 46 46 H 0.96703 * 114.00002 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.46810 * 59.99411 * 22 18 17 48 48 H 1.08993 * 109.47342 * 180.02562 * 22 18 17 49 49 H 1.08999 * 109.47089 * 299.99937 * 23 14 13 50 50 H 1.09001 * 109.46783 * 60.00198 * 23 14 13 51 51 H 1.07997 * 119.97254 * 180.02562 * 28 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2305 5 6 2.7265 -0.0376 -2.1395 6 6 3.1929 -0.6884 -3.2655 7 6 2.8539 -2.0147 -3.4890 8 8 3.3072 -2.6555 -4.5984 9 6 4.1240 -1.9004 -5.4955 10 6 4.5298 -2.7696 -6.6578 11 8 4.1566 -3.9223 -6.7123 12 7 5.3124 -2.2677 -7.6336 13 6 5.7117 -3.1144 -8.7604 14 6 6.5904 -2.3075 -9.7183 15 1 7.4336 -1.8866 -9.1707 16 6 7.1093 -3.2235 -10.8285 17 6 7.9875 -2.4164 -11.7868 18 6 7.1630 -1.2845 -12.4033 19 1 6.3198 -1.7058 -12.9507 20 6 8.0414 -0.4770 -13.3612 21 8 7.2440 0.5062 -14.0242 22 6 6.6440 -0.3684 -11.2932 23 6 5.7664 -1.1753 -10.3349 24 6 2.0557 -2.6877 -2.5751 25 7 1.6962 -4.1044 -2.8079 26 8 0.9959 -4.6949 -2.0052 27 8 2.1007 -4.6799 -3.8023 28 6 1.5966 -2.0344 -1.4481 29 1 -0.3933 0.4418 -0.7651 30 1 1.7924 -0.5138 0.8900 31 1 1.5879 2.4586 -1.2243 32 1 1.5615 2.4679 1.2085 33 1 2.9865 0.9963 -1.9673 34 1 3.8175 -0.1636 -3.9732 35 1 5.0155 -1.5551 -4.9718 36 1 3.5625 -1.0413 -5.8624 37 1 5.6111 -1.3459 -7.5897 38 1 6.2715 -3.9729 -8.3893 39 1 4.8228 -3.4607 -9.2877 40 1 7.6963 -4.0301 -10.3893 41 1 6.2661 -3.6444 -11.3762 42 1 8.8307 -1.9951 -11.2395 43 1 8.3576 -3.0691 -12.5775 44 1 8.8337 0.0167 -12.7987 45 1 8.4828 -1.1455 -14.1003 46 1 7.7366 1.0562 -14.6487 47 1 7.4873 0.0527 -10.7458 48 1 6.0563 0.4376 -11.7323 49 1 4.9232 -1.5962 -10.8826 50 1 5.3967 -0.5227 -9.5440 51 1 0.9756 -2.5579 -0.7363 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14939082_4549638.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:02:41 Heat of formation + Delta-G solvation = -141.582665 kcal Electronic energy + Delta-G solvation = -34766.271101 eV Core-core repulsion = 29828.483127 eV Total energy + Delta-G solvation = -4937.787973 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 381.176 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -43.29434 -41.78151 -40.89381 -40.03062 -39.35439 -37.65140 -37.61280 -37.44449 -35.83092 -33.52078 -32.95030 -32.24194 -31.69159 -30.16955 -27.83750 -27.78689 -26.52630 -24.80011 -24.00894 -23.59906 -22.81063 -21.74842 -21.59045 -20.72320 -20.51756 -19.77791 -19.19989 -18.64024 -18.53162 -18.23515 -18.17717 -17.61556 -17.21057 -16.82684 -16.52253 -16.35036 -16.11308 -15.92227 -15.84139 -15.60353 -15.15468 -15.10329 -14.84581 -14.73663 -14.57476 -14.08477 -14.03050 -13.77193 -13.67776 -13.43212 -13.22134 -13.07551 -12.81902 -12.70961 -12.51216 -12.38644 -12.35733 -12.27676 -12.21199 -12.02587 -11.89128 -11.81514 -11.39052 -11.20976 -11.05783 -10.96293 -10.83779 -10.76297 -10.75450 -10.18914 -9.79789 -4.91589 -1.31555 -0.24152 0.15633 0.35452 1.21960 1.27235 1.46615 1.61019 2.02312 2.05181 2.34934 3.11363 3.25134 3.31601 3.35189 3.44879 3.62719 3.64890 3.71629 3.75181 3.76692 3.78227 3.93142 4.01450 4.11730 4.19466 4.29398 4.31806 4.39760 4.46693 4.51212 4.52326 4.56085 4.60818 4.64089 4.67380 4.71006 4.78239 4.82864 4.84137 4.97404 5.07686 5.11042 5.17200 5.19253 5.23198 5.25961 5.30908 5.37758 5.47904 5.58111 5.76098 6.41296 6.44717 6.44991 6.89128 7.15699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.091 4.091 3 Si 0.790 3.210 4 C -0.148 4.148 5 C -0.004 4.004 6 C -0.188 4.188 7 C 0.193 3.807 8 O -0.292 6.292 9 C 0.025 3.975 10 C 0.505 3.495 11 O -0.569 6.569 12 N -0.706 5.706 13 C 0.126 3.874 14 C -0.085 4.085 15 H 0.097 0.903 16 C -0.114 4.114 17 C -0.107 4.107 18 C -0.092 4.092 19 H 0.057 0.943 20 C 0.075 3.925 21 O -0.597 6.597 22 C -0.105 4.105 23 C -0.113 4.113 24 C -0.105 4.105 25 N 0.034 4.966 26 O -0.203 6.203 27 O -0.175 6.175 28 C -0.003 4.003 29 H 0.389 0.611 30 H 0.127 0.873 31 H -0.261 1.261 32 H -0.309 1.309 33 H 0.189 0.811 34 H 0.207 0.793 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.422 0.578 38 H 0.059 0.941 39 H 0.051 0.949 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.048 0.952 46 H 0.395 0.605 47 H 0.073 0.927 48 H 0.055 0.945 49 H 0.050 0.950 50 H 0.079 0.921 51 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.350 14.113 -2.071 17.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.198 4.198 3 Si 0.693 3.307 4 C -0.149 4.149 5 C -0.021 4.021 6 C -0.207 4.207 7 C 0.144 3.856 8 O -0.202 6.202 9 C -0.052 4.052 10 C 0.291 3.709 11 O -0.447 6.447 12 N -0.361 5.361 13 C 0.002 3.998 14 C -0.103 4.103 15 H 0.116 0.884 16 C -0.152 4.152 17 C -0.144 4.144 18 C -0.110 4.110 19 H 0.076 0.924 20 C -0.002 4.002 21 O -0.405 6.405 22 C -0.143 4.143 23 C -0.150 4.150 24 C -0.190 4.190 25 N 0.544 4.456 26 O -0.410 6.410 27 O -0.389 6.389 28 C -0.022 4.022 29 H 0.238 0.762 30 H 0.145 0.855 31 H -0.187 1.187 32 H -0.238 1.238 33 H 0.206 0.794 34 H 0.224 0.776 35 H 0.165 0.835 36 H 0.160 0.840 37 H 0.260 0.740 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.244 0.756 47 H 0.091 0.909 48 H 0.073 0.927 49 H 0.068 0.932 50 H 0.098 0.902 51 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 9.625 13.936 -1.189 16.979 hybrid contribution -1.128 -0.783 -0.986 1.690 sum 8.498 13.153 -2.175 15.810 Atomic orbital electron populations 1.86634 1.18531 1.80458 1.50328 1.25530 0.83587 1.13120 0.97568 0.94176 0.89245 0.69882 0.77426 1.20380 1.02141 0.92538 0.99844 1.21722 0.89358 1.01285 0.89764 1.21813 1.06044 0.90432 1.02382 1.18982 0.89630 0.92102 0.84929 1.86473 1.63638 1.39785 1.30350 1.23131 0.98242 0.94394 0.89426 1.20544 0.78665 0.87676 0.84032 1.90853 1.55329 1.20343 1.78150 1.45642 1.51224 1.16874 1.22343 1.21395 0.98387 0.93597 0.86390 1.21335 0.98042 0.95672 0.95298 0.88446 1.21492 0.99647 0.97877 0.96149 1.21453 0.98048 0.96179 0.98735 1.21198 0.98236 0.95761 0.95838 0.92401 1.22320 0.92988 0.90207 0.94697 1.86431 1.41230 1.51278 1.61547 1.21451 0.99705 0.97374 0.95736 1.21605 0.97740 0.96783 0.98905 1.20872 1.13495 0.81496 1.03154 1.43914 0.98207 1.04028 0.99442 1.94500 1.36023 1.68361 1.42144 1.94684 1.56440 1.69397 1.18337 1.20843 0.94137 0.94795 0.92458 0.76158 0.85492 1.18670 1.23791 0.79397 0.77631 0.83495 0.83962 0.73997 0.92239 0.93016 0.90890 0.92462 0.90468 0.91502 0.92477 0.93368 0.75579 0.90878 0.92669 0.93160 0.90237 0.83221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.78 12.77 -148.98 -1.90 -1.13 16 2 C -0.09 0.59 2.82 71.24 0.20 0.79 16 3 Si 0.79 -8.12 29.78 68.60 2.04 -6.08 16 4 C -0.15 0.88 5.39 -19.85 -0.11 0.77 16 5 C 0.00 0.05 8.66 22.25 0.19 0.24 16 6 C -0.19 2.11 9.04 22.36 0.20 2.31 16 7 C 0.19 0.08 6.67 22.51 0.15 0.23 16 8 O -0.29 -1.32 7.68 -63.42 -0.49 -1.81 16 9 C 0.02 -0.19 5.22 71.24 0.37 0.19 16 10 C 0.51 0.64 7.91 87.66 0.69 1.33 16 11 O -0.57 -8.87 16.50 16.00 0.26 -8.61 16 12 N -0.71 4.36 5.28 -463.07 -2.45 1.92 16 13 C 0.13 -0.33 5.06 86.38 0.44 0.10 16 14 C -0.08 0.61 2.23 -10.79 -0.02 0.59 16 15 H 0.10 -0.99 8.14 -2.39 -0.02 -1.01 16 16 C -0.11 0.59 5.20 30.59 0.16 0.74 16 17 C -0.11 0.62 5.20 30.59 0.16 0.77 16 18 C -0.09 0.29 2.43 -10.79 -0.03 0.26 16 19 H 0.06 0.05 8.14 -2.38 -0.02 0.03 16 20 C 0.08 -0.26 6.43 71.98 0.46 0.20 16 21 O -0.60 0.23 13.19 -148.98 -1.97 -1.74 16 22 C -0.11 0.50 5.10 30.58 0.16 0.65 16 23 C -0.11 0.74 5.07 30.58 0.16 0.89 16 24 C -0.10 -0.74 6.87 36.48 0.25 -0.49 16 25 N 0.03 0.59 4.45 -46.24 -0.21 0.38 16 26 O -0.20 -3.86 18.45 18.89 0.35 -3.51 16 27 O -0.18 -3.88 17.24 25.60 0.44 -3.44 16 28 C 0.00 -0.01 9.12 22.25 0.20 0.20 16 29 H 0.39 -3.00 8.70 -74.05 -0.64 -3.64 16 30 H 0.13 -0.89 7.96 -2.38 -0.02 -0.91 16 31 H -0.26 2.37 7.11 99.48 0.71 3.08 16 32 H -0.31 0.04 7.11 99.48 0.71 0.75 16 33 H 0.19 -3.72 4.87 -2.91 -0.01 -3.73 16 34 H 0.21 -4.40 6.30 -2.91 -0.02 -4.42 16 35 H 0.15 -2.46 7.65 -2.38 -0.02 -2.48 16 36 H 0.14 -2.29 7.67 -2.39 -0.02 -2.30 16 37 H 0.42 -6.20 7.66 -92.71 -0.71 -6.91 16 38 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 39 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 40 H 0.07 -0.40 8.14 -2.39 -0.02 -0.41 16 41 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 42 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 43 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 44 H 0.06 -0.34 8.14 -2.39 -0.02 -0.36 16 45 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 46 H 0.39 -3.33 9.12 -74.06 -0.68 -4.00 16 47 H 0.07 -0.51 8.14 -2.39 -0.02 -0.53 16 48 H 0.05 -0.06 7.82 -2.39 -0.02 -0.07 16 49 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 50 H 0.08 -0.80 7.18 -2.39 -0.02 -0.82 16 51 H 0.15 0.58 7.61 -2.91 -0.02 0.55 16 Total: 0.00 -41.60 418.23 -1.27 -42.86 By element: Atomic # 1 Polarization: -27.66 SS G_CDS: -0.99 Total: -28.65 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 3.64 Total: 9.79 kcal Atomic # 7 Polarization: 4.95 SS G_CDS: -2.65 Total: 2.30 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -3.30 Total: -20.23 kcal Atomic # 14 Polarization: -8.12 SS G_CDS: 2.04 Total: -6.08 kcal Total: -41.60 -1.27 -42.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14939082_4549638.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.718 kcal (2) G-P(sol) polarization free energy of solvation -41.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds