Wall clock time and date at job start Sun Mar 7 2021 02:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35965 * 117.00220 * 2 1 4 4 C 1.39446 * 120.12109 * 180.02562 * 3 2 1 5 5 O 1.34776 * 133.24203 * 0.03803 * 4 3 2 6 6 C 1.34931 * 110.84041 * 179.97438 * 5 4 3 7 7 C 1.46995 * 125.14111 * 179.97438 * 6 5 4 8 8 O 1.21649 * 120.00330 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99780 * 0.02562 * 7 6 5 10 10 C 1.46503 * 120.00000 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.46922 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47070 * 55.00389 * 11 10 9 13 13 C 1.52997 * 109.46817 * 175.00209 * 11 10 9 14 14 C 1.52999 * 109.47317 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47159 * 300.00546 * 14 13 11 16 16 H 1.09002 * 109.46935 * 299.99411 * 15 14 13 17 17 C 1.53002 * 109.46982 * 179.97438 * 15 14 13 18 18 O 1.42899 * 109.47262 * 174.99741 * 17 15 14 19 19 C 1.52997 * 109.47452 * 59.99536 * 15 14 13 20 20 C 1.53000 * 109.47233 * 295.00015 * 11 10 9 21 21 C 1.35806 * 109.72132 * 0.22971 * 6 5 4 22 22 C 1.40611 * 119.13807 * 180.02562 * 4 3 2 23 23 C 1.39775 * 120.11896 * 0.02562 * 22 4 3 24 24 C 1.50699 * 120.09492 * 179.97438 * 23 22 4 25 25 O 1.42903 * 109.46951 * 285.02534 * 24 23 22 26 26 Si 1.86302 * 109.47271 * 165.02715 * 24 23 22 27 27 C 1.36629 * 119.81299 * 359.97438 * 23 22 4 28 28 C 1.38258 * 120.11911 * 0.02562 * 3 2 1 29 29 H 1.09008 * 109.46596 * 60.00067 * 1 2 3 30 30 H 1.08992 * 109.47112 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46847 * 300.00579 * 1 2 3 32 32 H 0.96999 * 120.00330 * 0.02562 * 9 7 6 33 33 H 1.09000 * 109.46911 * 60.00372 * 10 9 7 34 34 H 1.08996 * 109.47513 * 300.00100 * 10 9 7 35 35 H 1.08996 * 109.47853 * 300.00202 * 13 11 10 36 36 H 1.09002 * 109.47153 * 60.00231 * 13 11 10 37 37 H 1.09002 * 109.46716 * 60.00091 * 14 13 11 38 38 H 1.09000 * 109.47486 * 180.02562 * 14 13 11 39 39 H 1.08997 * 109.47011 * 294.99798 * 17 15 14 40 40 H 1.08999 * 109.47369 * 54.99905 * 17 15 14 41 41 H 0.96697 * 114.00727 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.46695 * 59.99734 * 19 15 14 43 43 H 1.08993 * 109.47194 * 179.97438 * 19 15 14 44 44 H 1.08992 * 109.47399 * 300.00166 * 20 11 10 45 45 H 1.09004 * 109.46724 * 60.00652 * 20 11 10 46 46 H 1.07999 * 126.95926 * 179.72763 * 21 6 5 47 47 H 1.08997 * 109.47099 * 45.02257 * 24 23 22 48 48 H 0.96704 * 113.99895 * 180.02562 * 25 24 23 49 49 H 1.48498 * 110.00008 * 59.99677 * 26 24 23 50 50 H 1.48492 * 110.00076 * 181.31839 * 26 24 23 51 51 H 1.08001 * 119.75617 * 179.97438 * 27 23 22 52 52 H 1.07993 * 119.66543 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4387 1.2873 -0.0005 5 8 4.4141 0.3572 -0.0018 6 6 5.6318 0.9385 -0.0024 7 6 6.9132 0.2183 -0.0032 8 8 7.9596 0.8386 -0.0032 9 7 6.9287 -1.1294 -0.0039 10 6 8.2058 -1.8473 -0.0053 11 6 7.9435 -3.3546 -0.0065 12 1 7.3000 -3.6108 -0.8482 13 6 9.2717 -4.1032 -0.1336 14 6 9.0096 -5.6106 -0.1342 15 6 8.3225 -6.0093 1.1735 16 1 8.9661 -5.7528 2.0150 17 6 8.0598 -7.5166 1.1725 18 8 7.5251 -7.9077 2.4387 19 6 6.9942 -5.2607 1.3005 20 6 7.2562 -3.7538 1.3009 21 6 5.4945 2.2896 0.0036 22 6 4.0555 2.5509 0.0000 23 6 3.2767 3.7116 0.0016 24 6 3.9384 5.0655 0.0028 25 8 4.4619 5.3387 1.3041 26 14 2.6863 6.3690 -0.4490 27 6 1.9138 3.6151 0.0022 28 6 1.2958 2.3726 0.0005 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 6.0943 -1.6241 -0.0042 33 1 8.7749 -1.5779 0.8845 34 1 8.7736 -1.5769 -0.8955 35 1 9.7615 -3.8189 -1.0649 36 1 9.9152 -3.8471 0.7082 37 1 8.3660 -5.8671 -0.9757 38 1 9.9559 -6.1440 -0.2243 39 1 7.3460 -7.7605 0.3857 40 1 8.9943 -8.0482 0.9930 41 1 7.3335 -8.8529 2.5098 42 1 6.3507 -5.5172 0.4590 43 1 6.5045 -5.5451 2.2318 44 1 7.8995 -3.4977 2.1425 45 1 6.3098 -3.2204 1.3913 46 1 6.2875 3.0228 0.0088 47 1 4.7502 5.0739 -0.7245 48 1 4.9026 6.1962 1.3787 49 1 1.5742 6.3678 0.5351 50 1 3.3335 7.7051 -0.4824 51 1 1.3130 4.5125 0.0038 52 1 0.2175 2.3120 0.0005 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14939082_6672420.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:03:24 Heat of formation + Delta-G solvation = -134.275719 kcal Electronic energy + Delta-G solvation = -34408.724481 eV Core-core repulsion = 29727.135323 eV Total energy + Delta-G solvation = -4681.589158 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.181 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -43.78532 -41.14952 -40.55364 -39.92151 -39.01893 -37.67645 -37.22520 -35.99193 -33.69535 -33.01931 -32.00538 -31.73219 -31.07948 -28.82859 -28.07151 -26.29145 -25.46985 -24.21697 -24.03775 -23.55770 -21.91897 -21.77351 -21.63706 -20.79612 -19.77786 -18.91625 -18.59932 -18.48806 -18.22271 -17.78988 -17.23836 -17.06094 -16.76611 -16.45542 -16.32763 -16.10755 -15.91993 -15.63493 -15.54483 -15.17345 -14.86847 -14.77162 -14.62565 -14.53856 -14.23397 -14.03816 -13.98869 -13.94092 -13.50670 -13.39274 -13.24135 -13.12642 -12.87300 -12.57399 -12.53712 -12.38676 -12.07640 -12.06747 -11.94058 -11.74488 -11.72653 -11.42668 -11.12736 -11.09828 -11.05076 -10.79888 -10.49665 -10.38446 -9.85733 -9.03258 -4.90881 -0.70384 0.06559 0.58297 1.14489 1.28495 1.61417 1.85330 1.88724 1.93369 2.11291 2.33682 3.13245 3.29438 3.36004 3.52913 3.57874 3.69167 3.70580 3.72521 3.79496 3.92072 3.96352 4.06155 4.11881 4.15011 4.28648 4.31564 4.35460 4.41227 4.41964 4.42522 4.45632 4.49288 4.56366 4.63090 4.67241 4.73276 4.75123 4.76008 4.80671 4.83571 4.93001 5.01116 5.04285 5.09173 5.13666 5.20438 5.21507 5.23086 5.30279 5.32934 5.43274 5.53076 5.55368 6.14884 6.25830 6.57406 6.76861 6.87761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.332 6.332 3 C 0.138 3.862 4 C 0.021 3.979 5 O -0.180 6.180 6 C -0.034 4.034 7 C 0.601 3.399 8 O -0.546 6.546 9 N -0.702 5.702 10 C 0.122 3.878 11 C -0.089 4.089 12 H 0.089 0.911 13 C -0.109 4.109 14 C -0.107 4.107 15 C -0.090 4.090 16 H 0.062 0.938 17 C 0.076 3.924 18 O -0.597 6.597 19 C -0.106 4.106 20 C -0.115 4.115 21 C -0.111 4.111 22 C -0.098 4.098 23 C -0.065 4.065 24 C -0.093 4.093 25 O -0.558 6.558 26 Si 0.779 3.221 27 C -0.090 4.090 28 C -0.165 4.165 29 H 0.078 0.922 30 H 0.117 0.883 31 H 0.071 0.929 32 H 0.416 0.584 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.395 0.605 42 H 0.067 0.933 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.175 0.825 47 H 0.086 0.914 48 H 0.394 0.606 49 H -0.281 1.281 50 H -0.286 1.286 51 H 0.161 0.839 52 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.295 -2.255 -4.827 7.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.246 6.246 3 C 0.092 3.908 4 C -0.027 4.027 5 O -0.082 6.082 6 C -0.084 4.084 7 C 0.387 3.613 8 O -0.425 6.425 9 N -0.353 5.353 10 C -0.001 4.001 11 C -0.107 4.107 12 H 0.108 0.892 13 C -0.147 4.147 14 C -0.145 4.145 15 C -0.108 4.108 16 H 0.081 0.919 17 C -0.002 4.002 18 O -0.405 6.405 19 C -0.143 4.143 20 C -0.153 4.153 21 C -0.132 4.132 22 C -0.099 4.099 23 C -0.065 4.065 24 C -0.200 4.200 25 O -0.368 6.368 26 Si 0.682 3.318 27 C -0.107 4.107 28 C -0.184 4.184 29 H 0.097 0.903 30 H 0.135 0.865 31 H 0.090 0.910 32 H 0.253 0.747 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.244 0.756 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.192 0.808 47 H 0.104 0.896 48 H 0.245 0.755 49 H -0.208 1.208 50 H -0.213 1.213 51 H 0.178 0.822 52 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -5.078 -1.605 -4.346 6.874 hybrid contribution 0.563 -0.330 1.025 1.215 sum -4.516 -1.936 -3.322 5.931 Atomic orbital electron populations 1.23496 0.75304 1.06063 1.03165 1.86143 1.24329 1.25665 1.88437 1.17945 0.86095 0.86824 0.99942 1.19183 0.88264 0.87065 1.08187 1.84010 1.12703 1.34994 1.76530 1.21963 0.84028 0.92775 1.09628 1.16649 0.84966 0.82762 0.76972 1.90885 1.31342 1.68288 1.52025 1.45908 1.11662 1.04920 1.72769 1.21631 0.84134 0.91581 1.02730 1.21367 0.98710 0.91647 0.99024 0.89237 1.21472 0.95697 0.94527 1.03009 1.21469 1.00945 0.95723 0.96337 1.21189 0.97320 0.93473 0.98855 0.91903 1.22322 0.97615 0.95243 0.85004 1.86436 1.86519 1.31607 1.35972 1.21442 0.96789 0.94247 1.01842 1.21602 1.00407 0.96110 0.97151 1.22842 0.95198 0.94465 1.00660 1.19594 0.92559 0.92772 1.04983 1.18661 0.93104 0.92260 1.02510 1.25167 1.06196 1.00773 0.87912 1.86574 1.77293 1.42532 1.30369 0.93951 0.76587 0.73700 0.87520 1.20840 0.92981 0.98832 0.98061 1.21353 1.01857 0.89464 1.05724 0.90333 0.86516 0.90995 0.74727 0.91533 0.90639 0.90279 0.91723 0.90816 0.90816 0.92776 0.92865 0.75574 0.91465 0.92815 0.92412 0.91942 0.80756 0.89612 0.75512 1.20764 1.21349 0.82161 0.80154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.08 9.81 113.37 1.11 1.04 16 2 O -0.33 -1.29 10.50 -93.15 -0.98 -2.27 16 3 C 0.14 0.70 6.70 22.57 0.15 0.85 16 4 C 0.02 0.20 7.35 23.14 0.17 0.37 16 5 O -0.18 -1.78 10.28 -13.45 -0.14 -1.92 16 6 C -0.03 -0.33 7.07 24.00 0.17 -0.16 16 7 C 0.60 5.71 7.80 86.54 0.67 6.39 16 8 O -0.55 -8.34 16.83 -4.19 -0.07 -8.41 16 9 N -0.70 -2.37 5.28 -466.78 -2.46 -4.83 16 10 C 0.12 0.12 5.06 86.38 0.44 0.56 16 11 C -0.09 0.24 2.23 -10.79 -0.02 0.21 16 12 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 13 C -0.11 0.39 5.20 30.59 0.16 0.55 16 14 C -0.11 0.41 5.20 30.60 0.16 0.57 16 15 C -0.09 0.05 2.43 -10.79 -0.03 0.02 16 16 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 17 C 0.08 -0.09 6.43 71.98 0.46 0.37 16 18 O -0.60 -1.22 13.19 -148.98 -1.97 -3.18 16 19 C -0.11 -0.03 5.10 30.58 0.16 0.13 16 20 C -0.12 0.07 5.07 30.58 0.16 0.22 16 21 C -0.11 -1.04 10.68 23.79 0.25 -0.78 16 22 C -0.10 -0.84 6.16 -20.24 -0.12 -0.96 16 23 C -0.06 -0.29 5.30 -19.87 -0.11 -0.40 16 24 C -0.09 -0.10 2.70 71.24 0.19 0.09 16 25 O -0.56 -2.30 12.86 -148.98 -1.92 -4.22 16 26 Si 0.78 -2.44 30.20 68.60 2.07 -0.37 16 27 C -0.09 -0.04 8.62 22.02 0.19 0.15 16 28 C -0.17 0.09 9.03 22.40 0.20 0.29 16 29 H 0.08 -0.72 7.66 -2.38 -0.02 -0.74 16 30 H 0.12 -0.97 8.14 -2.39 -0.02 -0.99 16 31 H 0.07 -0.58 7.66 -2.39 -0.02 -0.60 16 32 H 0.42 0.18 7.37 -92.71 -0.68 -0.51 16 33 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.08 0.11 8.14 -2.39 -0.02 0.09 16 35 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 36 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 37 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 38 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 39 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 40 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 41 H 0.39 -2.47 9.12 -74.06 -0.68 -3.14 16 42 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 43 H 0.05 0.22 7.82 -2.39 -0.02 0.20 16 44 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 45 H 0.06 -0.03 7.18 -2.39 -0.02 -0.04 16 46 H 0.18 1.31 8.06 -2.91 -0.02 1.29 16 47 H 0.09 -0.12 7.96 -2.39 -0.02 -0.14 16 48 H 0.39 -1.61 8.74 -74.05 -0.65 -2.25 16 49 H -0.28 -0.42 6.75 99.48 0.67 0.25 16 50 H -0.29 -0.39 7.11 99.48 0.71 0.32 16 51 H 0.16 -0.69 4.85 -2.91 -0.01 -0.71 16 52 H 0.18 -1.43 6.26 -2.91 -0.02 -1.45 16 Total: 0.00 -23.75 419.45 -2.12 -25.87 By element: Atomic # 1 Polarization: -9.15 SS G_CDS: -1.03 Total: -10.18 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 4.37 Total: 9.51 kcal Atomic # 7 Polarization: -2.37 SS G_CDS: -2.46 Total: -4.83 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -5.07 Total: -20.00 kcal Atomic # 14 Polarization: -2.44 SS G_CDS: 2.07 Total: -0.37 kcal Total: -23.75 -2.12 -25.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14939082_6672420.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.404 kcal (2) G-P(sol) polarization free energy of solvation -23.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds