Wall clock time and date at job start Sun Mar 7 2021 02:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33821 * 122.45088 * 2 1 4 4 C 1.50700 * 124.51914 * 0.04029 * 3 2 1 5 5 O 1.42896 * 109.47314 * 329.99595 * 4 3 2 6 6 Si 1.86302 * 109.46693 * 209.99930 * 4 3 2 7 7 S 1.70616 * 110.95528 * 180.02562 * 3 2 1 8 8 C 1.75830 * 91.56460 * 0.02562 * 7 3 2 9 9 C 1.46582 * 125.46098 * 179.97438 * 8 7 3 10 10 O 1.21700 * 120.00162 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99594 * 0.02562 * 9 8 7 12 12 C 1.46506 * 119.99654 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46901 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.47398 * 54.99796 * 13 12 11 15 15 C 1.53002 * 109.47233 * 174.99970 * 13 12 11 16 16 C 1.52997 * 109.47415 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.46978 * 300.00098 * 16 15 13 18 18 H 1.09002 * 109.46838 * 299.99316 * 17 16 15 19 19 C 1.53000 * 109.46806 * 179.97438 * 17 16 15 20 20 O 1.42900 * 109.47069 * 174.99592 * 19 17 16 21 21 C 1.53002 * 109.47128 * 59.99726 * 17 16 15 22 22 C 1.52992 * 109.47106 * 300.00123 * 21 17 16 23 23 C 1.36651 * 109.08620 * 0.24068 * 8 7 3 24 24 H 1.09006 * 109.46543 * 90.00419 * 1 2 3 25 25 H 1.08994 * 109.47293 * 210.00034 * 1 2 3 26 26 H 1.08992 * 109.47016 * 330.00632 * 1 2 3 27 27 H 1.08998 * 109.47355 * 90.00479 * 4 3 2 28 28 H 0.96694 * 113.99935 * 179.97438 * 5 4 3 29 29 H 1.48494 * 110.00051 * 60.00275 * 6 4 3 30 30 H 1.48502 * 109.99870 * 181.31713 * 6 4 3 31 31 H 0.97000 * 120.00479 * 359.97438 * 11 9 8 32 32 H 1.08990 * 109.47427 * 60.00091 * 12 11 9 33 33 H 1.09001 * 109.47036 * 299.99805 * 12 11 9 34 34 H 1.09000 * 109.46986 * 299.99797 * 15 13 12 35 35 H 1.09002 * 109.47075 * 59.99068 * 15 13 12 36 36 H 1.09002 * 109.47045 * 59.99931 * 16 15 13 37 37 H 1.08998 * 109.47171 * 179.97438 * 16 15 13 38 38 H 1.08991 * 109.47625 * 294.99856 * 19 17 16 39 39 H 1.09002 * 109.47069 * 55.00175 * 19 17 16 40 40 H 0.96693 * 114.00191 * 180.02562 * 20 19 17 41 41 H 1.09002 * 109.47070 * 60.00059 * 21 17 16 42 42 H 1.08996 * 109.46550 * 179.97438 * 21 17 16 43 43 H 1.09002 * 109.47103 * 299.99915 * 22 21 17 44 44 H 1.08998 * 109.46862 * 180.02562 * 22 21 17 45 45 H 1.07994 * 123.35516 * 179.76000 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 6 1.6355 2.5161 0.0009 5 8 0.3750 2.4984 -0.6721 6 14 2.7920 3.6830 -0.8776 7 16 3.8970 0.7892 -0.0007 8 6 3.5937 -0.9427 -0.0018 9 6 4.6231 -1.9863 -0.0033 10 8 4.3001 -3.1597 -0.0045 11 7 5.9273 -1.6463 -0.0035 12 6 6.9561 -2.6893 -0.0056 13 6 8.3412 -2.0393 -0.0047 14 1 8.4199 -1.3528 0.8383 15 6 9.4134 -3.1238 0.1188 16 6 10.7985 -2.4739 0.1191 17 6 11.0006 -1.7034 -1.1872 18 1 10.9217 -2.3901 -2.0300 19 6 12.3855 -1.0530 -1.1867 20 8 12.6204 -0.4316 -2.4519 21 6 9.9283 -0.6189 -1.3108 22 6 8.5433 -1.2688 -1.3110 23 6 2.2446 -1.1602 -0.0070 24 1 -0.3632 -0.0001 -1.0278 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.4940 2.8502 1.0287 28 1 -0.0631 3.3596 -0.7093 29 1 2.9932 3.2386 -2.2801 30 1 2.2371 5.0602 -0.8559 31 1 6.1848 -0.7111 -0.0030 32 1 6.8451 -3.3074 -0.8964 33 1 6.8460 -3.3101 0.8835 34 1 9.2692 -3.6729 1.0493 35 1 9.3347 -3.8103 -0.7241 36 1 10.8775 -1.7872 0.9619 37 1 11.5623 -3.2464 0.2076 38 1 12.4338 -0.3018 -0.3984 39 1 13.1446 -1.8149 -1.0096 40 1 13.4819 0.0015 -2.5234 41 1 10.0073 0.0678 -0.4680 42 1 10.0726 -0.0698 -2.2412 43 1 8.4644 -1.9556 -2.1538 44 1 7.7795 -0.4963 -1.3995 45 1 1.8020 -2.1452 -0.0124 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14939082_6739946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:03:29 Heat of formation + Delta-G solvation = -108.257744 kcal Electronic energy + Delta-G solvation = -25354.829463 eV Core-core repulsion = 21657.337440 eV Total energy + Delta-G solvation = -3697.492022 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.138 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.95940 -40.12543 -39.52336 -37.72174 -37.46348 -35.72688 -33.05436 -32.05260 -31.78847 -30.18694 -28.48455 -26.32265 -24.82004 -24.06055 -23.56737 -21.75249 -21.60501 -20.82456 -19.97817 -19.11060 -18.56492 -18.24638 -17.34948 -16.85618 -16.67942 -16.25145 -16.09544 -15.96732 -15.58775 -15.23073 -14.96013 -14.80233 -14.71237 -14.49408 -14.40077 -14.12882 -13.94729 -13.49257 -13.18571 -13.17218 -13.10828 -12.94812 -12.82880 -12.59488 -12.49122 -12.13616 -12.11715 -11.97254 -11.93491 -11.48476 -11.25553 -11.13542 -11.01644 -10.85424 -10.82788 -10.11662 -9.57778 -9.32526 -5.23113 -0.54281 0.31799 0.73830 1.04081 1.38791 1.49209 1.82461 2.11604 2.27808 3.08409 3.17540 3.54659 3.59772 3.64267 3.68727 3.82401 4.01114 4.12453 4.14157 4.22327 4.28325 4.36523 4.40462 4.43429 4.45593 4.50139 4.57312 4.62851 4.64040 4.71532 4.79145 4.86030 4.93709 4.97254 5.00451 5.07760 5.10563 5.13362 5.17251 5.22511 5.36492 5.40286 5.46365 5.48855 5.53038 6.25585 6.42654 6.66275 7.18049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.089 4.089 3 C -0.197 4.197 4 C -0.033 4.033 5 O -0.524 6.524 6 Si 0.658 3.342 7 S 0.201 5.799 8 C -0.262 4.262 9 C 0.592 3.408 10 O -0.526 6.526 11 N -0.726 5.726 12 C 0.124 3.876 13 C -0.100 4.100 14 H 0.079 0.921 15 C -0.110 4.110 16 C -0.112 4.112 17 C -0.089 4.089 18 H 0.078 0.922 19 C 0.078 3.922 20 O -0.574 6.574 21 C -0.110 4.110 22 C -0.117 4.117 23 C -0.048 4.048 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.381 0.619 29 H -0.242 1.242 30 H -0.242 1.242 31 H 0.398 0.602 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.380 0.620 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.746 4.918 2.926 6.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 C -0.316 4.316 4 C -0.144 4.144 5 O -0.332 6.332 6 Si 0.556 3.444 7 S 0.469 5.531 8 C -0.382 4.382 9 C 0.378 3.622 10 O -0.404 6.404 11 N -0.378 5.378 12 C 0.001 3.999 13 C -0.119 4.119 14 H 0.098 0.902 15 C -0.148 4.148 16 C -0.150 4.150 17 C -0.107 4.107 18 H 0.096 0.904 19 C 0.000 4.000 20 O -0.379 6.379 21 C -0.147 4.147 22 C -0.155 4.155 23 C -0.081 4.081 24 H 0.090 0.910 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.230 0.770 29 H -0.166 1.166 30 H -0.165 1.165 31 H 0.233 0.767 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.227 0.773 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.519 4.666 2.071 6.818 hybrid contribution -1.780 0.164 0.015 1.787 sum 2.740 4.830 2.086 5.932 Atomic orbital electron populations 1.20511 0.88687 1.02483 1.02779 1.18706 0.98530 0.90555 1.02401 1.23268 0.98327 0.98532 1.11444 1.24016 0.91457 0.97578 1.01351 1.86686 1.31703 1.35552 1.79257 0.95551 0.86053 0.78644 0.84179 1.82588 1.02214 0.98717 1.69536 1.24584 0.97976 0.96717 1.18887 1.16917 0.81584 0.87368 0.76305 1.90860 1.81620 1.18177 1.49710 1.45867 1.05416 1.10439 1.76084 1.21488 0.85554 0.89965 1.02933 1.21454 0.93278 0.98045 0.99132 0.90229 1.21466 0.93420 0.97173 1.02721 1.21500 0.97099 0.99446 0.96940 1.21178 0.93392 0.97477 0.98688 0.90376 1.22244 0.96709 0.95739 0.85266 1.86473 1.41060 1.75126 1.35250 1.21512 0.93357 0.97298 1.02556 1.21642 0.97208 0.99511 0.97105 1.20717 0.90941 1.00107 0.96337 0.90992 0.92109 0.90382 0.89484 0.76971 1.16565 1.16540 0.76694 0.90964 0.90951 0.91190 0.91302 0.91585 0.91467 0.93664 0.93704 0.77321 0.92055 0.91012 0.91470 0.91922 0.82724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.10 8.70 36.00 0.31 0.22 16 2 C -0.09 -0.19 5.75 -106.45 -0.61 -0.80 16 3 C -0.20 -0.19 5.57 -35.86 -0.20 -0.39 16 4 C -0.03 0.03 2.75 36.01 0.10 0.13 16 5 O -0.52 0.26 9.81 -35.23 -0.35 -0.08 16 6 Si 0.66 -0.96 31.31 -169.99 -5.32 -6.28 16 7 S 0.20 -0.09 19.80 -107.50 -2.13 -2.21 16 8 C -0.26 -0.63 6.45 -36.79 -0.24 -0.86 16 9 C 0.59 2.11 7.78 -12.90 -0.10 2.01 16 10 O -0.53 -3.82 16.84 5.19 0.09 -3.74 16 11 N -0.73 -0.34 5.28 -61.65 -0.33 -0.67 16 12 C 0.12 -0.01 5.06 -4.04 -0.02 -0.03 16 13 C -0.10 0.19 2.23 -90.62 -0.20 -0.01 16 14 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 15 C -0.11 0.22 5.20 -26.73 -0.14 0.08 16 16 C -0.11 0.23 5.20 -26.73 -0.14 0.09 16 17 C -0.09 0.08 2.43 -90.62 -0.22 -0.14 16 18 H 0.08 0.03 8.14 -51.93 -0.42 -0.40 16 19 C 0.08 -0.08 6.43 37.16 0.24 0.16 16 20 O -0.57 -0.17 13.19 -35.23 -0.46 -0.64 16 21 C -0.11 0.11 5.10 -26.73 -0.14 -0.03 16 22 C -0.12 0.17 5.07 -26.74 -0.14 0.04 16 23 C -0.05 -0.13 9.80 -40.43 -0.40 -0.53 16 24 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 25 H 0.06 0.03 8.13 -51.93 -0.42 -0.40 16 26 H 0.08 0.06 6.41 -51.93 -0.33 -0.27 16 27 H 0.09 -0.24 7.96 -51.93 -0.41 -0.66 16 28 H 0.38 -1.69 8.74 45.56 0.40 -1.29 16 29 H -0.24 -0.51 7.11 56.52 0.40 -0.11 16 30 H -0.24 0.01 7.11 56.52 0.40 0.42 16 31 H 0.40 -0.69 6.77 -40.82 -0.28 -0.97 16 32 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 33 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 34 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 35 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 36 H 0.07 -0.15 8.14 -51.93 -0.42 -0.58 16 37 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 38 H 0.05 -0.08 8.14 -51.93 -0.42 -0.51 16 39 H 0.04 -0.07 8.14 -51.93 -0.42 -0.50 16 40 H 0.38 -1.41 9.12 45.56 0.42 -0.99 16 41 H 0.06 -0.09 8.14 -51.93 -0.42 -0.51 16 42 H 0.07 0.03 7.82 -51.93 -0.41 -0.37 16 43 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 44 H 0.06 -0.12 7.18 -51.93 -0.37 -0.49 16 45 H 0.16 0.41 8.06 -52.49 -0.42 -0.01 16 LS Contribution 370.00 15.07 5.58 5.58 Total: 0.00 -8.19 370.00 -11.34 -19.52 By element: Atomic # 1 Polarization: -4.89 SS G_CDS: -6.53 Total: -11.42 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -1.89 Total: -0.06 kcal Atomic # 7 Polarization: -0.34 SS G_CDS: -0.33 Total: -0.67 kcal Atomic # 8 Polarization: -3.73 SS G_CDS: -0.72 Total: -4.45 kcal Atomic # 14 Polarization: -0.96 SS G_CDS: -5.32 Total: -6.28 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -2.13 Total: -2.21 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -8.19 -11.34 -19.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14939082_6739946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.735 kcal (2) G-P(sol) polarization free energy of solvation -8.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds