Wall clock time and date at job start Sun Mar 7 2021 02:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33821 * 122.45088 * 2 1 4 4 C 1.50700 * 124.51914 * 0.04029 * 3 2 1 5 5 O 1.42896 * 109.47314 * 329.99595 * 4 3 2 6 6 Si 1.86302 * 109.46693 * 209.99930 * 4 3 2 7 7 S 1.70616 * 110.95528 * 180.02562 * 3 2 1 8 8 C 1.75830 * 91.56460 * 0.02562 * 7 3 2 9 9 C 1.46582 * 125.46098 * 179.97438 * 8 7 3 10 10 O 1.21700 * 120.00162 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99594 * 0.02562 * 9 8 7 12 12 C 1.46506 * 119.99654 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46901 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.47398 * 54.99796 * 13 12 11 15 15 C 1.53002 * 109.47233 * 174.99970 * 13 12 11 16 16 C 1.52997 * 109.47415 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.46978 * 300.00098 * 16 15 13 18 18 H 1.09002 * 109.46838 * 299.99316 * 17 16 15 19 19 C 1.53000 * 109.46806 * 179.97438 * 17 16 15 20 20 O 1.42900 * 109.47069 * 174.99592 * 19 17 16 21 21 C 1.53002 * 109.47128 * 59.99726 * 17 16 15 22 22 C 1.52992 * 109.47106 * 300.00123 * 21 17 16 23 23 C 1.36651 * 109.08620 * 0.24068 * 8 7 3 24 24 H 1.09006 * 109.46543 * 90.00419 * 1 2 3 25 25 H 1.08994 * 109.47293 * 210.00034 * 1 2 3 26 26 H 1.08992 * 109.47016 * 330.00632 * 1 2 3 27 27 H 1.08998 * 109.47355 * 90.00479 * 4 3 2 28 28 H 0.96694 * 113.99935 * 179.97438 * 5 4 3 29 29 H 1.48494 * 110.00051 * 60.00275 * 6 4 3 30 30 H 1.48502 * 109.99870 * 181.31713 * 6 4 3 31 31 H 0.97000 * 120.00479 * 359.97438 * 11 9 8 32 32 H 1.08990 * 109.47427 * 60.00091 * 12 11 9 33 33 H 1.09001 * 109.47036 * 299.99805 * 12 11 9 34 34 H 1.09000 * 109.46986 * 299.99797 * 15 13 12 35 35 H 1.09002 * 109.47075 * 59.99068 * 15 13 12 36 36 H 1.09002 * 109.47045 * 59.99931 * 16 15 13 37 37 H 1.08998 * 109.47171 * 179.97438 * 16 15 13 38 38 H 1.08991 * 109.47625 * 294.99856 * 19 17 16 39 39 H 1.09002 * 109.47069 * 55.00175 * 19 17 16 40 40 H 0.96693 * 114.00191 * 180.02562 * 20 19 17 41 41 H 1.09002 * 109.47070 * 60.00059 * 21 17 16 42 42 H 1.08996 * 109.46550 * 179.97438 * 21 17 16 43 43 H 1.09002 * 109.47103 * 299.99915 * 22 21 17 44 44 H 1.08998 * 109.46862 * 180.02562 * 22 21 17 45 45 H 1.07994 * 123.35516 * 179.76000 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 6 1.6355 2.5161 0.0009 5 8 0.3750 2.4984 -0.6721 6 14 2.7920 3.6830 -0.8776 7 16 3.8970 0.7892 -0.0007 8 6 3.5937 -0.9427 -0.0018 9 6 4.6231 -1.9863 -0.0033 10 8 4.3001 -3.1597 -0.0045 11 7 5.9273 -1.6463 -0.0035 12 6 6.9561 -2.6893 -0.0056 13 6 8.3412 -2.0393 -0.0047 14 1 8.4199 -1.3528 0.8383 15 6 9.4134 -3.1238 0.1188 16 6 10.7985 -2.4739 0.1191 17 6 11.0006 -1.7034 -1.1872 18 1 10.9217 -2.3901 -2.0300 19 6 12.3855 -1.0530 -1.1867 20 8 12.6204 -0.4316 -2.4519 21 6 9.9283 -0.6189 -1.3108 22 6 8.5433 -1.2688 -1.3110 23 6 2.2446 -1.1602 -0.0070 24 1 -0.3632 -0.0001 -1.0278 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.4940 2.8502 1.0287 28 1 -0.0631 3.3596 -0.7093 29 1 2.9932 3.2386 -2.2801 30 1 2.2371 5.0602 -0.8559 31 1 6.1848 -0.7111 -0.0030 32 1 6.8451 -3.3074 -0.8964 33 1 6.8460 -3.3101 0.8835 34 1 9.2692 -3.6729 1.0493 35 1 9.3347 -3.8103 -0.7241 36 1 10.8775 -1.7872 0.9619 37 1 11.5623 -3.2464 0.2076 38 1 12.4338 -0.3018 -0.3984 39 1 13.1446 -1.8149 -1.0096 40 1 13.4819 0.0015 -2.5234 41 1 10.0073 0.0678 -0.4680 42 1 10.0726 -0.0698 -2.2412 43 1 8.4644 -1.9556 -2.1538 44 1 7.7795 -0.4963 -1.3995 45 1 1.8020 -2.1452 -0.0124 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14939082_6739946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:03:28 Heat of formation + Delta-G solvation = -108.065118 kcal Electronic energy + Delta-G solvation = -25354.821110 eV Core-core repulsion = 21657.337440 eV Total energy + Delta-G solvation = -3697.483669 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.138 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.11256 -40.10624 -39.58174 -37.67848 -37.44942 -35.85128 -33.10483 -32.09020 -31.67891 -30.22180 -28.49880 -26.34643 -24.79918 -24.06296 -23.50576 -21.83583 -21.61701 -20.73615 -20.03765 -19.19208 -18.52799 -18.17820 -17.40185 -16.97456 -16.73200 -16.24985 -16.13096 -15.94556 -15.59382 -15.19187 -14.98341 -14.79759 -14.69484 -14.53660 -14.48189 -14.14392 -13.95004 -13.46600 -13.24562 -13.14537 -13.07601 -12.96204 -12.79836 -12.59931 -12.49412 -12.13706 -12.02210 -12.00126 -11.88885 -11.40281 -11.36825 -11.06046 -11.04790 -10.82317 -10.75311 -10.28194 -9.61875 -9.36349 -5.13551 -0.66987 0.27273 0.67080 1.04810 1.33254 1.52135 1.89045 1.99929 2.06045 3.22766 3.33392 3.61936 3.63178 3.70245 3.76154 3.79533 4.10703 4.11807 4.19812 4.32020 4.33086 4.40872 4.47053 4.50762 4.53324 4.56524 4.61353 4.67674 4.71643 4.77850 4.79354 4.85650 4.88256 4.98236 4.98989 5.11027 5.18095 5.20632 5.26597 5.28907 5.36794 5.38509 5.43578 5.48681 5.58539 6.32082 6.55210 6.91428 6.99903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.040 4.040 5 O -0.541 6.541 6 Si 0.731 3.269 7 S 0.269 5.731 8 C -0.288 4.288 9 C 0.589 3.411 10 O -0.573 6.573 11 N -0.711 5.711 12 C 0.124 3.876 13 C -0.088 4.088 14 H 0.095 0.905 15 C -0.110 4.110 16 C -0.107 4.107 17 C -0.091 4.091 18 H 0.059 0.941 19 C 0.076 3.924 20 O -0.597 6.597 21 C -0.105 4.105 22 C -0.116 4.116 23 C -0.061 4.061 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.083 0.917 27 H 0.115 0.885 28 H 0.398 0.602 29 H -0.293 1.293 30 H -0.256 1.256 31 H 0.411 0.589 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.395 0.605 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.070 0.930 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.506 6.800 4.097 9.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 C -0.324 4.324 4 C -0.150 4.150 5 O -0.352 6.352 6 Si 0.632 3.368 7 S 0.538 5.462 8 C -0.408 4.408 9 C 0.376 3.624 10 O -0.455 6.455 11 N -0.363 5.363 12 C 0.001 3.999 13 C -0.107 4.107 14 H 0.113 0.887 15 C -0.148 4.148 16 C -0.144 4.144 17 C -0.109 4.109 18 H 0.078 0.922 19 C -0.002 4.002 20 O -0.405 6.405 21 C -0.143 4.143 22 C -0.153 4.153 23 C -0.095 4.095 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.102 0.898 27 H 0.132 0.868 28 H 0.250 0.750 29 H -0.220 1.220 30 H -0.181 1.181 31 H 0.248 0.752 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.244 0.756 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.088 0.912 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.311 6.595 3.264 9.075 hybrid contribution -1.999 -0.342 -0.427 2.072 sum 3.312 6.253 2.837 7.623 Atomic orbital electron populations 1.20469 0.88373 1.02851 1.02326 1.18782 0.99017 0.90676 1.03835 1.23729 0.99412 0.99313 1.09972 1.24254 0.91491 0.96267 1.03031 1.86650 1.31921 1.37251 1.79397 0.94818 0.84472 0.76780 0.80706 1.82235 1.00673 0.95607 1.67674 1.24620 0.97621 0.98622 1.19939 1.17159 0.82534 0.86999 0.75710 1.90824 1.82427 1.20083 1.52156 1.45789 1.04602 1.11309 1.74615 1.21514 0.86374 0.89928 1.02065 1.21372 0.91881 0.98080 0.99364 0.88716 1.21474 0.93567 0.97089 1.02713 1.21460 0.96877 0.99547 0.96542 1.21190 0.93795 0.97291 0.98653 0.92227 1.22319 0.96613 0.96155 0.85096 1.86434 1.42476 1.75496 1.36084 1.21455 0.93372 0.97287 1.02142 1.21623 0.97370 0.99456 0.96866 1.20754 0.91495 1.00151 0.97113 0.91841 0.91938 0.89810 0.86776 0.75005 1.22007 1.18052 0.75233 0.92331 0.91436 0.90579 0.92138 0.90529 0.91171 0.92526 0.93174 0.75595 0.90923 0.92635 0.92799 0.91185 0.83845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.25 8.70 71.24 0.62 0.37 16 2 C -0.11 -0.54 5.75 -21.05 -0.12 -0.66 16 3 C -0.20 -0.27 5.57 24.68 0.14 -0.14 16 4 C -0.04 0.14 2.75 71.24 0.20 0.33 16 5 O -0.54 1.03 9.81 -148.98 -1.46 -0.43 16 6 Si 0.73 -3.00 31.31 68.60 2.15 -0.85 16 7 S 0.27 -0.46 19.80 -56.49 -1.12 -1.57 16 8 C -0.29 -1.64 6.45 24.08 0.16 -1.48 16 9 C 0.59 5.01 7.78 86.42 0.67 5.68 16 10 O -0.57 -9.77 16.84 -4.35 -0.07 -9.84 16 11 N -0.71 -0.93 5.28 -467.17 -2.47 -3.40 16 12 C 0.12 0.07 5.06 86.38 0.44 0.51 16 13 C -0.09 0.37 2.23 -10.79 -0.02 0.35 16 14 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 15 C -0.11 0.45 5.20 30.59 0.16 0.61 16 16 C -0.11 0.51 5.20 30.59 0.16 0.67 16 17 C -0.09 0.17 2.43 -10.79 -0.03 0.14 16 18 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 19 C 0.08 -0.19 6.43 71.98 0.46 0.27 16 20 O -0.60 -0.40 13.19 -148.98 -1.97 -2.37 16 21 C -0.11 0.24 5.10 30.59 0.16 0.39 16 22 C -0.12 0.34 5.07 30.59 0.16 0.50 16 23 C -0.06 -0.44 9.80 21.72 0.21 -0.23 16 24 H 0.06 0.27 8.14 -2.38 -0.02 0.25 16 25 H 0.06 0.13 8.13 -2.39 -0.02 0.11 16 26 H 0.08 0.12 6.41 -2.39 -0.02 0.11 16 27 H 0.11 -0.94 7.96 -2.39 -0.02 -0.96 16 28 H 0.40 -4.03 8.74 -74.06 -0.65 -4.68 16 29 H -0.29 -1.35 7.11 99.48 0.71 -0.64 16 30 H -0.26 0.41 7.11 99.48 0.71 1.12 16 31 H 0.41 -1.72 6.77 -92.71 -0.63 -2.34 16 32 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 35 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 36 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 37 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 38 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 39 H 0.05 -0.19 8.14 -2.39 -0.02 -0.21 16 40 H 0.39 -2.95 9.12 -74.06 -0.68 -3.63 16 41 H 0.07 -0.32 8.14 -2.39 -0.02 -0.33 16 42 H 0.05 0.07 7.82 -2.39 -0.02 0.06 16 43 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 44 H 0.07 -0.32 7.18 -2.39 -0.02 -0.33 16 45 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 Total: 0.00 -20.96 370.00 -2.49 -23.44 By element: Atomic # 1 Polarization: -11.40 SS G_CDS: -0.90 Total: -12.31 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 3.35 Total: 7.33 kcal Atomic # 7 Polarization: -0.93 SS G_CDS: -2.47 Total: -3.40 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -3.50 Total: -12.64 kcal Atomic # 14 Polarization: -3.00 SS G_CDS: 2.15 Total: -0.85 kcal Atomic # 16 Polarization: -0.46 SS G_CDS: -1.12 Total: -1.57 kcal Total: -20.96 -2.49 -23.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14939082_6739946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.620 kcal (2) G-P(sol) polarization free energy of solvation -20.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds