Wall clock time and date at job start Sun Mar 7 2021 02:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86297 * 109.46832 * 2 1 4 4 C 1.50699 * 109.47349 * 120.00111 * 2 1 3 5 5 C 1.32777 * 124.70902 * 64.99880 * 4 2 1 6 6 C 1.44425 * 113.07769 * 180.02562 * 5 4 2 7 7 C 1.47191 * 123.45690 * 180.02562 * 6 5 4 8 8 O 1.21642 * 119.99935 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99918 * 179.97438 * 7 6 5 10 10 C 1.46506 * 120.00055 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47139 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.46998 * 305.00362 * 11 10 9 13 13 C 1.53005 * 109.46804 * 65.00240 * 11 10 9 14 14 C 1.52999 * 109.46768 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47498 * 300.00318 * 14 13 11 16 16 H 1.08998 * 109.47158 * 299.99727 * 15 14 13 17 17 C 1.52999 * 109.47157 * 179.97438 * 15 14 13 18 18 O 1.42903 * 109.47256 * 65.00201 * 17 15 14 19 19 C 1.52996 * 109.47324 * 59.99888 * 15 14 13 20 20 C 1.52999 * 109.46961 * 300.00068 * 19 15 14 21 21 C 1.36008 * 113.08244 * 0.26734 * 6 5 4 22 22 S 1.70446 * 110.81306 * 359.59406 * 21 6 5 23 23 H 0.96705 * 113.99759 * 299.99960 * 1 2 3 24 24 H 1.09000 * 109.46594 * 240.00199 * 2 1 3 25 25 H 1.48509 * 109.99664 * 178.68224 * 3 2 1 26 26 H 1.48500 * 110.00305 * 300.00082 * 3 2 1 27 27 H 1.07997 * 123.45811 * 0.02562 * 5 4 2 28 28 H 0.97001 * 120.00174 * 0.02562 * 9 7 6 29 29 H 1.09004 * 109.46865 * 60.00148 * 10 9 7 30 30 H 1.09001 * 109.47345 * 300.00457 * 10 9 7 31 31 H 1.08999 * 109.47085 * 299.99797 * 13 11 10 32 32 H 1.08998 * 109.47244 * 60.00272 * 13 11 10 33 33 H 1.08996 * 109.47277 * 179.97438 * 14 13 11 34 34 H 1.09001 * 109.47195 * 60.00374 * 14 13 11 35 35 H 1.08997 * 109.47286 * 304.99761 * 17 15 14 36 36 H 1.09008 * 109.47201 * 184.99542 * 17 15 14 37 37 H 0.96700 * 114.00311 * 180.02562 * 18 17 15 38 38 H 1.08998 * 109.47134 * 59.99825 * 19 15 14 39 39 H 1.08999 * 109.47038 * 180.02562 * 19 15 14 40 40 H 1.09004 * 109.47113 * 179.97438 * 20 19 15 41 41 H 1.08993 * 109.47646 * 300.00120 * 20 19 15 42 42 H 1.08001 * 124.59003 * 179.71152 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7486 -2.0004 1.4863 6 6 2.3357 -2.4181 2.7380 7 6 2.2695 -3.7984 3.2447 8 8 1.6971 -4.6563 2.5997 9 7 2.8430 -4.1118 4.4234 10 6 2.7766 -5.4855 4.9281 11 6 3.4995 -5.5699 6.2739 12 1 4.5174 -5.1961 6.1636 13 6 2.7541 -4.7227 7.3071 14 6 3.4767 -4.8076 8.6531 15 6 3.5156 -6.2640 9.1201 16 1 2.4976 -6.6376 9.2302 17 6 4.2387 -6.3489 10.4658 18 8 3.4812 -5.6538 11.4583 19 6 4.2609 -7.1112 8.0869 20 6 3.5383 -7.0264 6.7410 21 6 2.9515 -1.4039 3.4028 22 16 2.8387 0.0525 2.5245 23 1 -0.3933 0.4417 0.7651 24 1 1.7923 -0.5138 -0.8900 25 1 3.5346 1.7703 0.0321 26 1 1.5614 2.4679 -1.2085 27 1 1.2156 -2.6686 0.8262 28 1 3.2991 -3.4276 4.9379 29 1 3.2547 -6.1578 4.2156 30 1 1.7338 -5.7752 5.0574 31 1 2.7261 -3.6852 6.9742 32 1 1.7362 -5.0965 7.4174 33 1 2.9460 -4.2037 9.3891 34 1 4.4947 -4.4340 8.5432 35 1 5.2254 -5.8944 10.3774 36 1 4.3449 -7.3943 10.7559 37 1 3.8813 -5.6660 12.3386 38 1 5.2789 -6.7376 7.9769 39 1 4.2882 -8.1489 8.4195 40 1 4.0696 -7.6296 6.0047 41 1 2.5203 -7.3999 6.8509 42 1 3.4466 -1.5078 4.3570 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14939082_6894386.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:03:31 Heat of formation + Delta-G solvation = -108.710647 kcal Electronic energy + Delta-G solvation = -23283.633580 eV Core-core repulsion = 19741.659537 eV Total energy + Delta-G solvation = -3541.974043 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 312.123 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.18167 -40.03552 -38.81405 -37.63589 -37.10711 -35.86149 -33.04793 -31.72774 -31.60933 -28.32819 -26.95580 -25.79186 -24.34979 -23.60794 -22.01552 -21.70527 -20.86451 -20.37235 -18.99747 -18.23962 -18.07514 -17.69524 -16.77129 -16.68532 -16.26861 -16.13082 -15.90926 -15.55469 -15.20631 -15.11950 -14.81987 -14.65476 -14.41734 -14.15257 -14.02475 -13.69987 -13.60426 -13.40072 -13.10013 -12.84100 -12.64862 -12.50848 -12.30415 -12.05047 -11.94480 -11.91541 -11.41264 -11.22996 -11.07478 -11.00533 -10.77751 -10.58706 -10.26516 -10.00211 -9.43521 -5.13843 -0.34818 0.38837 0.68894 0.81278 1.22225 1.60630 1.90479 2.09707 2.24616 3.30636 3.39371 3.61089 3.65847 3.72426 3.74830 3.90136 3.97267 4.09316 4.17434 4.27276 4.30669 4.40375 4.44296 4.48269 4.50535 4.58372 4.65899 4.69195 4.70133 4.76179 4.80007 4.95021 4.98945 5.08574 5.14624 5.16279 5.21085 5.23615 5.29039 5.36451 5.45803 5.55759 6.43268 6.68451 6.89060 7.11791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.039 4.039 3 Si 0.744 3.256 4 C -0.249 4.249 5 C -0.078 4.078 6 C -0.184 4.184 7 C 0.572 3.428 8 O -0.587 6.587 9 N -0.708 5.708 10 C 0.125 3.875 11 C -0.086 4.086 12 H 0.092 0.908 13 C -0.113 4.113 14 C -0.105 4.105 15 C -0.091 4.091 16 H 0.060 0.940 17 C 0.076 3.924 18 O -0.596 6.596 19 C -0.107 4.107 20 C -0.112 4.112 21 C -0.190 4.190 22 S 0.257 5.743 23 H 0.397 0.603 24 H 0.113 0.887 25 H -0.255 1.255 26 H -0.274 1.274 27 H 0.130 0.870 28 H 0.414 0.586 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.395 0.605 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.155 4.507 6.654 9.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.151 4.151 3 Si 0.646 3.354 4 C -0.366 4.366 5 C -0.107 4.107 6 C -0.202 4.202 7 C 0.359 3.641 8 O -0.469 6.469 9 N -0.360 5.360 10 C 0.001 3.999 11 C -0.105 4.105 12 H 0.111 0.889 13 C -0.150 4.150 14 C -0.143 4.143 15 C -0.109 4.109 16 H 0.078 0.922 17 C -0.002 4.002 18 O -0.405 6.405 19 C -0.144 4.144 20 C -0.150 4.150 21 C -0.328 4.328 22 S 0.523 5.477 23 H 0.247 0.753 24 H 0.130 0.870 25 H -0.181 1.181 26 H -0.199 1.199 27 H 0.148 0.852 28 H 0.252 0.748 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.244 0.756 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 5.450 5.740 5.008 9.367 hybrid contribution -0.208 -2.402 0.121 2.415 sum 5.242 3.338 5.129 8.058 Atomic orbital electron populations 1.86508 1.17005 1.82240 1.50350 1.24727 0.85182 1.10426 0.94750 0.94171 0.79360 0.74082 0.87828 1.24910 1.09580 0.98226 1.03895 1.20981 0.98943 0.95078 0.95697 1.20088 1.08092 0.93943 0.98047 1.17958 0.77785 0.87380 0.80968 1.90794 1.45685 1.51280 1.59161 1.45726 1.56782 1.12550 1.20985 1.21442 1.00753 0.82264 0.95391 1.21347 1.00145 0.97055 0.91968 0.88949 1.21604 0.98909 1.00034 0.94495 1.21456 1.01042 0.95634 0.96125 1.21184 0.99695 0.96745 0.93293 0.92153 1.22316 0.94078 0.95602 0.88184 1.86433 1.52971 1.78137 1.22915 1.21459 0.99434 0.99887 0.93651 1.21483 1.01259 0.95139 0.97087 1.26178 1.02977 0.97961 1.05733 1.82826 1.48669 1.07765 1.08440 0.75295 0.86980 1.18087 1.19909 0.85245 0.74844 0.92109 0.92631 0.90905 0.92828 0.92547 0.91116 0.92609 0.93178 0.75565 0.90655 0.91207 0.90827 0.92130 0.77898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.79 12.88 -148.98 -1.92 -2.70 16 2 C -0.04 0.00 2.94 71.24 0.21 0.21 16 3 Si 0.74 -2.62 30.92 68.60 2.12 -0.50 16 4 C -0.25 -0.12 5.65 24.51 0.14 0.01 16 5 C -0.08 -0.45 9.95 22.67 0.23 -0.22 16 6 C -0.18 -0.66 5.98 -19.87 -0.12 -0.78 16 7 C 0.57 4.46 7.79 86.60 0.67 5.14 16 8 O -0.59 -10.40 16.80 -4.16 -0.07 -10.47 16 9 N -0.71 -0.03 5.25 -466.57 -2.45 -2.49 16 10 C 0.12 0.07 5.06 86.38 0.44 0.51 16 11 C -0.09 0.39 2.23 -10.79 -0.02 0.36 16 12 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 13 C -0.11 0.43 5.08 30.60 0.16 0.58 16 14 C -0.11 0.28 5.10 30.59 0.16 0.44 16 15 C -0.09 0.18 2.43 -10.80 -0.03 0.15 16 16 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 17 C 0.08 -0.19 6.43 71.98 0.46 0.27 16 18 O -0.60 -0.28 13.20 -148.98 -1.97 -2.25 16 19 C -0.11 0.49 5.20 30.59 0.16 0.65 16 20 C -0.11 0.42 5.20 30.59 0.16 0.58 16 21 C -0.19 0.82 10.38 67.30 0.70 1.52 16 22 S 0.26 -1.39 20.20 -56.49 -1.14 -2.53 16 23 H 0.40 -2.84 8.70 -74.05 -0.64 -3.49 16 24 H 0.11 0.17 7.96 -2.39 -0.02 0.15 16 25 H -0.26 0.12 7.11 99.48 0.71 0.83 16 26 H -0.27 -0.89 7.11 99.48 0.71 -0.18 16 27 H 0.13 1.31 8.06 -2.91 -0.02 1.29 16 28 H 0.41 -2.81 6.15 -92.71 -0.57 -3.39 16 29 H 0.06 0.18 8.14 -2.38 -0.02 0.16 16 30 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.07 -0.44 7.18 -2.39 -0.02 -0.46 16 32 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 33 H 0.06 0.04 7.82 -2.39 -0.02 0.02 16 34 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 35 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 36 H 0.05 -0.19 8.14 -2.38 -0.02 -0.21 16 37 H 0.39 -3.03 9.12 -74.06 -0.68 -3.70 16 38 H 0.07 -0.46 8.14 -2.39 -0.02 -0.48 16 39 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 40 H 0.07 -0.31 8.14 -2.38 -0.02 -0.33 16 41 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 42 H 0.20 -2.41 7.01 -2.91 -0.02 -2.43 16 Total: 0.00 -22.30 352.59 -2.93 -25.23 By element: Atomic # 1 Polarization: -12.91 SS G_CDS: -0.81 Total: -13.72 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 3.31 Total: 9.43 kcal Atomic # 7 Polarization: -0.03 SS G_CDS: -2.45 Total: -2.49 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -3.95 Total: -15.42 kcal Atomic # 14 Polarization: -2.62 SS G_CDS: 2.12 Total: -0.50 kcal Atomic # 16 Polarization: -1.39 SS G_CDS: -1.14 Total: -2.53 kcal Total: -22.30 -2.93 -25.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14939082_6894386.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.480 kcal (2) G-P(sol) polarization free energy of solvation -22.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds