Wall clock time and date at job start Sun Mar 7 2021 02:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47221 * 43.58944 * 3 2 1 5 5 C 1.42906 * 113.99554 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47029 * 329.99306 * 5 4 3 7 7 C 1.52996 * 109.47268 * 90.00060 * 5 4 3 8 8 C 1.52997 * 109.46822 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46976 * 299.99435 * 8 7 5 10 10 H 1.08998 * 109.47139 * 300.00017 * 9 8 7 11 11 N 1.46500 * 109.47049 * 180.02562 * 9 8 7 12 12 C 1.34781 * 120.00150 * 84.99859 * 11 9 8 13 13 O 1.21691 * 120.00076 * 5.15816 * 12 11 9 14 14 C 1.46682 * 119.99875 * 185.15845 * 12 11 9 15 15 C 1.37871 * 126.23379 * 354.31218 * 14 12 11 16 16 C 1.39837 * 107.08521 * 179.97438 * 15 14 12 17 17 C 1.50696 * 126.06643 * 180.02562 * 16 15 14 18 18 O 1.42904 * 109.47149 * 65.00218 * 17 16 15 19 19 Si 1.86308 * 109.46810 * 184.99720 * 17 16 15 20 20 C 1.35452 * 107.86111 * 0.25950 * 16 15 14 21 21 N 1.35534 * 108.87722 * 359.57426 * 20 16 15 22 22 C 1.46497 * 125.68299 * 180.16945 * 21 20 16 23 23 C 1.52991 * 109.47110 * 60.00354 * 9 8 7 24 24 C 1.52997 * 109.47116 * 300.00017 * 23 9 8 25 25 H 4.38446 * 5.44431 * 180.02562 * 4 1 2 26 26 H 1.08993 * 109.46965 * 283.58443 * 3 2 1 27 27 H 1.08999 * 109.46555 * 163.58516 * 3 2 1 28 28 H 1.09003 * 109.46520 * 299.99303 * 7 5 4 29 29 H 1.09001 * 109.47388 * 59.99252 * 7 5 4 30 30 H 1.09008 * 109.47138 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47609 * 60.00055 * 8 7 5 32 32 H 0.97003 * 120.00107 * 265.00479 * 11 9 8 33 33 H 1.08002 * 126.45913 * 359.97438 * 15 14 12 34 34 H 1.08995 * 109.47436 * 304.99866 * 17 16 15 35 35 H 0.96701 * 114.00216 * 60.00152 * 18 17 16 36 36 H 1.48499 * 109.99600 * 179.97438 * 19 17 16 37 37 H 1.48500 * 110.00133 * 301.32099 * 19 17 16 38 38 H 1.08006 * 125.55919 * 179.73327 * 20 16 15 39 39 H 1.09004 * 109.47095 * 274.25939 * 22 21 20 40 40 H 1.09003 * 109.46989 * 34.25693 * 22 21 20 41 41 H 1.08997 * 109.47058 * 154.25693 * 22 21 20 42 42 H 1.09001 * 109.47071 * 60.00232 * 23 9 8 43 43 H 1.08999 * 109.47096 * 179.97438 * 23 9 8 44 44 H 1.08998 * 109.47009 * 180.02562 * 24 23 9 45 45 H 1.09001 * 109.47235 * 299.99510 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1228 -0.9749 -0.9289 5 6 4.5474 -1.0563 -1.0062 6 1 4.9795 -0.0802 -0.7862 7 6 5.0557 -2.0801 0.0108 8 6 6.5809 -2.1676 -0.0724 9 6 6.9906 -2.6016 -1.4812 10 1 6.5581 -3.5777 -1.7009 11 7 8.4510 -2.6860 -1.5608 12 6 9.0834 -3.8104 -1.1703 13 8 8.4382 -4.7881 -0.8406 14 6 10.5492 -3.8555 -1.1427 15 6 11.4035 -2.8700 -1.5898 16 6 12.7072 -3.3273 -1.3737 17 6 13.9748 -2.5838 -1.7072 18 8 14.0618 -1.4057 -0.9030 19 14 15.4441 -3.6777 -1.3671 20 6 12.6283 -4.5592 -0.8161 21 7 11.3225 -4.8894 -0.6651 22 6 10.8180 -6.1407 -0.0943 23 6 6.4823 -1.5780 -2.4983 24 6 4.9571 -1.4903 -2.4150 25 1 -1.0499 -0.0001 -0.0003 26 1 3.0094 -0.2405 0.9989 27 1 3.0088 0.9866 -0.2904 28 1 4.7634 -1.7711 1.0144 29 1 4.6235 -3.0563 -0.2091 30 1 6.9431 -2.8967 0.6525 31 1 7.0135 -1.1916 0.1473 32 1 8.9629 -1.9327 -1.8945 33 1 11.1193 -1.9233 -2.0250 34 1 13.9658 -2.3046 -2.7608 35 1 14.0745 -1.5789 0.0483 36 1 16.7005 -2.9562 -1.6926 37 1 15.4501 -4.0912 0.0592 38 1 13.4689 -5.1764 -0.5351 39 1 10.7642 -6.9002 -0.8743 40 1 11.4905 -6.4773 0.6947 41 1 9.8240 -5.9757 0.3214 42 1 6.9149 -0.6019 -2.2786 43 1 6.7746 -1.8869 -3.5019 44 1 4.5950 -0.7614 -3.1399 45 1 4.5246 -2.4664 -2.6348 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14940684_10803934.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:46:56 Heat of formation + Delta-G solvation = -8.557826 kcal Electronic energy + Delta-G solvation = -26402.189287 eV Core-core repulsion = 22581.753898 eV Total energy + Delta-G solvation = -3820.435388 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.56252 -40.92170 -39.79088 -37.97365 -37.70704 -35.21825 -34.10449 -33.70707 -31.90303 -31.32386 -29.51713 -28.31255 -27.65892 -25.70706 -24.32315 -23.78530 -22.60763 -21.39794 -21.07401 -20.39290 -19.37405 -18.84607 -17.91420 -17.79566 -17.25970 -16.87134 -16.80928 -16.50154 -16.23871 -15.93793 -15.58926 -15.47824 -15.07401 -14.99143 -14.86168 -14.42836 -14.29006 -14.01213 -13.81243 -13.51268 -13.44973 -13.27305 -13.23233 -13.14976 -12.67088 -12.43031 -12.36355 -12.18847 -11.86857 -11.78279 -11.72031 -11.34855 -11.29843 -11.14860 -10.46499 -10.44148 -10.17216 -9.70462 -9.27176 -4.84643 0.40369 1.39785 1.47046 1.55774 1.59162 1.67991 1.78044 2.04295 2.27180 2.30709 2.87223 3.51423 3.54631 3.57728 3.69421 3.72773 3.83731 4.00216 4.02597 4.07783 4.14459 4.22430 4.23298 4.29271 4.35255 4.36559 4.40637 4.42627 4.45640 4.59440 4.71429 4.74377 4.77958 4.80565 4.90814 5.00768 5.01126 5.09090 5.12230 5.18524 5.24693 5.26646 5.44174 5.67761 5.89046 6.15898 6.18534 6.46371 6.56139 6.62642 7.11599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.237 4.237 3 C 0.167 3.833 4 O -0.399 6.399 5 C 0.089 3.911 6 H 0.087 0.913 7 C -0.135 4.135 8 C -0.118 4.118 9 C 0.147 3.853 10 H 0.068 0.932 11 N -0.703 5.703 12 C 0.587 3.413 13 O -0.584 6.584 14 C -0.079 4.079 15 C -0.110 4.110 16 C -0.215 4.215 17 C -0.044 4.044 18 O -0.551 6.551 19 Si 0.764 3.236 20 C 0.033 3.967 21 N -0.413 5.413 22 C 0.061 3.939 23 C -0.113 4.113 24 C -0.111 4.111 25 H 0.248 0.752 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.416 0.584 33 H 0.160 0.840 34 H 0.120 0.880 35 H 0.384 0.616 36 H -0.308 1.308 37 H -0.280 1.280 38 H 0.197 0.803 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.142 1.120 -0.498 2.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.237 4.237 3 C 0.092 3.908 4 O -0.319 6.319 5 C 0.032 3.968 6 H 0.105 0.895 7 C -0.174 4.174 8 C -0.157 4.157 9 C 0.043 3.957 10 H 0.086 0.914 11 N -0.354 5.354 12 C 0.376 3.624 13 O -0.466 6.466 14 C -0.191 4.191 15 C -0.136 4.136 16 C -0.221 4.221 17 C -0.153 4.153 18 O -0.359 6.359 19 Si 0.670 3.330 20 C -0.104 4.104 21 N -0.085 5.085 22 C -0.079 4.079 23 C -0.151 4.151 24 C -0.149 4.149 25 H 0.264 0.736 26 H 0.103 0.897 27 H 0.110 0.890 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.253 0.747 33 H 0.177 0.823 34 H 0.138 0.862 35 H 0.232 0.768 36 H -0.236 1.236 37 H -0.206 1.206 38 H 0.214 0.786 39 H 0.104 0.896 40 H 0.127 0.873 41 H 0.102 0.898 42 H 0.113 0.887 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.106 0.164 -0.337 2.139 hybrid contribution -0.317 0.884 1.109 1.453 sum 1.789 1.048 0.772 2.212 Atomic orbital electron populations 1.25853 0.96982 0.97889 0.98093 1.23255 0.95171 1.02663 1.02575 1.19315 0.84102 0.93163 0.94201 1.87969 1.22605 1.59213 1.62129 1.22307 0.79440 0.99216 0.95854 0.89484 1.21952 0.95143 1.00191 1.00076 1.21792 0.95182 1.02331 0.96389 1.21028 0.78719 1.00214 0.95787 0.91377 1.45602 1.07787 1.16500 1.65464 1.17208 0.85704 0.83002 0.76447 1.90781 1.68481 1.36080 1.51238 1.20095 0.91225 0.93001 1.14816 1.21434 0.91615 0.98510 1.02035 1.19821 0.95753 0.96496 1.10072 1.24465 1.00911 0.91396 0.98577 1.86558 1.95543 1.31514 1.22284 0.94316 0.73201 0.83577 0.81943 1.22315 0.86046 0.97974 1.04074 1.44024 1.05690 1.14607 1.44157 1.22418 1.02195 0.82943 1.00339 1.21707 0.94583 0.99602 0.99175 1.21503 0.95147 1.02780 0.95495 0.73568 0.89738 0.88988 0.90913 0.92459 0.93179 0.89732 0.74669 0.82286 0.86239 0.76752 1.23623 1.20600 0.78622 0.89571 0.87285 0.89772 0.88724 0.89622 0.89744 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.51 19.25 74.32 1.43 0.92 16 2 C -0.24 -1.30 13.73 31.13 0.43 -0.88 16 3 C 0.17 0.21 6.22 70.18 0.44 0.65 16 4 O -0.40 -1.74 9.95 -148.98 -1.48 -3.23 16 5 C 0.09 -0.12 2.61 30.59 0.08 -0.04 16 6 H 0.09 -0.48 7.79 -2.39 -0.02 -0.50 16 7 C -0.14 0.00 5.54 30.59 0.17 0.17 16 8 C -0.12 0.08 5.49 30.59 0.17 0.24 16 9 C 0.15 -0.09 2.50 44.99 0.11 0.02 16 10 H 0.07 0.35 7.51 -2.39 -0.02 0.33 16 11 N -0.70 0.53 5.06 -446.51 -2.26 -1.73 16 12 C 0.59 3.33 7.73 86.45 0.67 4.00 16 13 O -0.58 -7.29 14.29 -4.32 -0.06 -7.35 16 14 C -0.08 -0.28 6.88 40.35 0.28 0.00 16 15 C -0.11 -0.04 10.29 22.57 0.23 0.19 16 16 C -0.22 0.15 5.43 -20.12 -0.11 0.04 16 17 C -0.04 0.08 3.02 71.23 0.22 0.29 16 18 O -0.55 -0.87 12.88 -148.98 -1.92 -2.79 16 19 Si 0.76 -2.64 30.60 68.60 2.10 -0.54 16 20 C 0.03 -0.06 9.94 83.48 0.83 0.77 16 21 N -0.41 -0.69 3.16 -534.30 -1.69 -2.38 16 22 C 0.06 -0.07 10.64 127.77 1.36 1.29 16 23 C -0.11 0.61 5.39 30.59 0.16 0.78 16 24 C -0.11 0.26 5.57 30.59 0.17 0.43 16 25 H 0.25 -1.15 7.80 -4.42 -0.03 -1.18 16 26 H 0.08 -0.15 7.87 -2.39 -0.02 -0.17 16 27 H 0.09 -0.28 8.09 -2.39 -0.02 -0.30 16 28 H 0.07 -0.06 7.87 -2.39 -0.02 -0.08 16 29 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.05 0.21 8.14 -2.38 -0.02 0.19 16 31 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 32 H 0.42 -2.55 7.51 -92.71 -0.70 -3.24 16 33 H 0.16 -0.57 7.45 -2.91 -0.02 -0.60 16 34 H 0.12 -0.35 7.96 -2.39 -0.02 -0.37 16 35 H 0.38 -1.40 8.70 -74.06 -0.64 -2.04 16 36 H -0.31 -1.56 7.11 99.48 0.71 -0.85 16 37 H -0.28 0.09 7.11 99.48 0.71 0.80 16 38 H 0.20 -1.52 6.21 -2.91 -0.02 -1.54 16 39 H 0.09 -0.21 8.14 -2.38 -0.02 -0.23 16 40 H 0.11 -0.72 8.14 -2.39 -0.02 -0.74 16 41 H 0.08 0.32 6.23 -2.39 -0.01 0.30 16 42 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 43 H 0.09 -0.51 8.14 -2.39 -0.02 -0.53 16 44 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 45 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 Total: 0.00 -22.18 374.64 1.02 -21.16 By element: Atomic # 1 Polarization: -11.74 SS G_CDS: -0.30 Total: -12.04 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 6.63 Total: 8.89 kcal Atomic # 7 Polarization: -0.16 SS G_CDS: -3.95 Total: -4.11 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -3.46 Total: -13.36 kcal Atomic # 14 Polarization: -2.64 SS G_CDS: 2.10 Total: -0.54 kcal Total: -22.18 1.02 -21.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14940684_10803934.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.600 kcal (2) G-P(sol) polarization free energy of solvation -22.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds