Wall clock time and date at job start Sun Mar 7 2021 02:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47086 * 184.69350 * 3 2 1 5 5 C 1.42890 * 114.00407 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.47300 * 329.99862 * 5 4 3 7 7 C 1.53006 * 109.47432 * 89.99709 * 5 4 3 8 8 C 1.53000 * 109.47253 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47115 * 300.00502 * 8 7 5 10 10 H 1.09007 * 109.46761 * 299.99624 * 9 8 7 11 11 N 1.46499 * 109.47145 * 180.02562 * 9 8 7 12 12 C 1.34777 * 120.00195 * 84.99285 * 11 9 8 13 13 O 1.21723 * 120.00037 * 0.02562 * 12 11 9 14 14 C 1.46565 * 119.99949 * 180.27569 * 12 11 9 15 15 C 1.40858 * 126.57869 * 179.72414 * 14 12 11 16 16 C 1.40081 * 132.86759 * 0.02562 * 15 14 12 17 17 C 1.36453 * 119.25493 * 180.02562 * 16 15 14 18 18 C 1.50703 * 120.29744 * 179.97438 * 17 16 15 19 19 O 1.42891 * 109.47337 * 119.97170 * 18 17 16 20 20 Si 1.86297 * 109.46956 * 239.97543 * 18 17 16 21 21 C 1.40157 * 119.40906 * 359.90696 * 17 16 15 22 22 C 1.35183 * 120.31842 * 0.03886 * 21 17 16 23 23 N 1.36244 * 120.70819 * 0.02562 * 22 21 17 24 24 N 1.40007 * 132.01277 * 179.97438 * 23 22 21 25 25 C 1.30743 * 109.60515 * 179.75205 * 24 23 22 26 26 C 1.52995 * 109.47337 * 59.99951 * 9 8 7 27 27 C 1.53000 * 109.47216 * 299.99724 * 26 9 8 28 28 H 4.38452 * 5.44509 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.47023 * 64.69489 * 3 2 1 30 30 H 1.09003 * 109.47330 * 304.69578 * 3 2 1 31 31 H 1.08993 * 109.46938 * 300.00474 * 7 5 4 32 32 H 1.08998 * 109.46585 * 60.00063 * 7 5 4 33 33 H 1.09001 * 109.46796 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.46883 * 60.00256 * 8 7 5 35 35 H 0.97000 * 120.00069 * 265.00013 * 11 9 8 36 36 H 1.08000 * 120.37520 * 359.92950 * 16 15 14 37 37 H 1.09000 * 109.46969 * 359.97066 * 18 17 16 38 38 H 0.96701 * 114.00421 * 60.00522 * 19 18 17 39 39 H 1.48505 * 110.00225 * 58.68157 * 20 18 17 40 40 H 1.48506 * 109.99924 * 179.97438 * 20 18 17 41 41 H 1.08002 * 119.84238 * 180.02562 * 21 17 16 42 42 H 1.08004 * 119.64713 * 180.02562 * 22 21 17 43 43 H 1.08001 * 125.63164 * 180.26327 * 25 24 23 44 44 H 1.08998 * 109.46913 * 60.00238 * 26 9 8 45 45 H 1.09002 * 109.46851 * 180.02562 * 26 9 8 46 46 H 1.09001 * 109.46954 * 179.97438 * 27 26 9 47 47 H 1.08999 * 109.47097 * 300.00253 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1217 1.3436 0.1102 5 6 4.5461 1.4569 0.1189 6 1 4.9793 0.5593 0.5605 7 6 5.0539 1.6155 -1.3157 8 6 6.5791 1.7361 -1.3064 9 6 6.9891 2.9581 -0.4822 10 1 6.5563 3.8559 -0.9237 11 7 8.4494 3.0740 -0.4738 12 6 9.0813 3.7042 -1.4838 13 8 8.4385 4.1776 -2.4027 14 6 10.5428 3.8148 -1.4784 15 6 11.3413 4.4349 -2.4591 16 6 11.0385 5.0938 -3.6577 17 6 12.0541 5.6023 -4.4140 18 6 11.7552 6.3151 -5.7078 19 8 12.2407 7.6570 -5.6355 20 14 12.5932 5.4263 -7.1143 21 6 13.3776 5.4571 -3.9762 22 6 13.6462 4.8184 -2.8155 23 7 12.6392 4.3061 -2.0540 24 7 12.6438 3.6140 -0.8370 25 6 11.4161 3.3269 -0.4910 26 6 6.4813 2.7995 0.9523 27 6 4.9561 2.6789 0.9431 28 1 -1.0503 -0.0004 -0.0002 29 1 3.0095 -0.4384 -0.9291 30 1 3.0096 -0.5842 0.8449 31 1 4.7622 0.7447 -1.9027 32 1 4.6207 2.5130 -1.7572 33 1 6.9408 1.8495 -2.3284 34 1 7.0119 0.8383 -0.8650 35 1 8.9617 2.6970 0.2586 36 1 10.0130 5.1968 -3.9803 37 1 10.6783 6.3269 -5.8757 38 1 13.1940 7.7230 -5.4872 39 1 12.1203 4.0201 -7.1803 40 1 12.3057 6.1190 -8.3961 41 1 14.1867 5.8573 -4.5692 42 1 14.6701 4.7131 -2.4882 43 1 11.1216 2.8003 0.4047 44 1 6.9142 1.9017 1.3937 45 1 6.7730 3.6703 1.5394 46 1 4.5945 2.5654 1.9651 47 1 4.5234 3.5767 0.5017 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14940684_11618758.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:47:03 Heat of formation + Delta-G solvation = 43.105162 kcal Electronic energy + Delta-G solvation = -30542.695153 eV Core-core repulsion = 26274.395707 eV Total energy + Delta-G solvation = -4268.299445 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.157 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.31073 -41.02592 -39.89298 -39.29734 -37.84168 -37.21399 -35.00815 -34.23773 -33.88891 -32.09440 -31.88875 -30.83747 -29.43749 -27.78820 -27.14035 -25.04974 -24.13049 -23.75503 -23.14981 -22.59252 -21.43576 -20.94776 -19.43249 -19.03266 -18.51466 -17.94475 -17.85417 -17.59995 -17.05585 -16.99553 -16.69397 -16.47802 -16.26067 -15.86803 -15.73000 -15.40193 -15.24133 -14.97188 -14.79331 -14.51598 -14.29121 -14.23552 -14.02259 -13.77958 -13.50714 -13.45385 -13.24584 -13.14093 -12.66763 -12.40696 -12.36601 -12.23238 -12.18162 -11.99847 -11.85714 -11.71658 -11.57493 -11.34512 -11.28919 -10.97462 -10.79328 -10.45524 -10.26915 -10.09103 -8.80717 -5.08894 -0.57713 -0.11030 1.00779 1.05106 1.19091 1.47278 1.66509 1.77354 1.94943 2.07433 2.19024 2.47462 2.86932 3.08237 3.23290 3.45785 3.51398 3.58619 3.60864 3.71405 3.74740 3.87249 3.95387 4.02939 4.07800 4.14105 4.19073 4.24061 4.29427 4.34554 4.37830 4.40685 4.43457 4.46222 4.59925 4.64716 4.76856 4.81323 4.92595 5.00700 5.02041 5.09294 5.10356 5.13224 5.16292 5.25108 5.28815 5.30377 5.53164 5.67519 6.18533 6.28855 6.55443 6.60539 6.75729 7.29142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.237 4.237 3 C 0.167 3.833 4 O -0.400 6.400 5 C 0.090 3.910 6 H 0.089 0.911 7 C -0.136 4.136 8 C -0.118 4.118 9 C 0.147 3.853 10 H 0.060 0.940 11 N -0.709 5.709 12 C 0.597 3.403 13 O -0.596 6.596 14 C -0.347 4.347 15 C 0.150 3.850 16 C -0.136 4.136 17 C -0.054 4.054 18 C -0.078 4.078 19 O -0.547 6.547 20 Si 0.817 3.183 21 C -0.146 4.146 22 C 0.116 3.884 23 N -0.273 5.273 24 N -0.337 5.337 25 C 0.132 3.868 26 C -0.111 4.111 27 C -0.112 4.112 28 H 0.248 0.752 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.415 0.585 36 H 0.135 0.865 37 H 0.104 0.896 38 H 0.401 0.599 39 H -0.303 1.303 40 H -0.290 1.290 41 H 0.223 0.777 42 H 0.215 0.785 43 H 0.236 0.764 44 H 0.098 0.902 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.100 -2.602 2.326 8.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.237 4.237 3 C 0.092 3.908 4 O -0.320 6.320 5 C 0.033 3.967 6 H 0.107 0.893 7 C -0.174 4.174 8 C -0.157 4.157 9 C 0.043 3.957 10 H 0.079 0.921 11 N -0.360 5.360 12 C 0.387 3.613 13 O -0.479 6.479 14 C -0.362 4.362 15 C 0.028 3.972 16 C -0.156 4.156 17 C -0.060 4.060 18 C -0.186 4.186 19 O -0.355 6.355 20 Si 0.721 3.279 21 C -0.167 4.167 22 C -0.010 4.010 23 N -0.037 5.037 24 N -0.158 5.158 25 C -0.048 4.048 26 C -0.149 4.149 27 C -0.150 4.150 28 H 0.265 0.735 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.252 0.748 36 H 0.153 0.847 37 H 0.121 0.879 38 H 0.252 0.748 39 H -0.231 1.231 40 H -0.217 1.217 41 H 0.239 0.761 42 H 0.231 0.769 43 H 0.252 0.748 44 H 0.116 0.884 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.063 -2.559 1.359 8.568 hybrid contribution -1.918 -0.165 0.140 1.930 sum 6.146 -2.724 1.498 6.887 Atomic orbital electron populations 1.25865 0.96982 0.96300 0.99684 1.23261 0.95177 1.03381 1.01855 1.19321 0.84116 0.84628 1.02731 1.87965 1.22669 1.26560 1.94798 1.22299 0.79407 0.99972 0.95020 0.89272 1.21960 0.95318 1.02475 0.97683 1.21787 0.95023 0.98833 1.00049 1.20963 0.79307 0.98150 0.97326 0.92136 1.45589 1.07479 1.58231 1.24741 1.17090 0.85789 0.76751 0.81639 1.90759 1.68388 1.51175 1.37541 1.19723 0.93755 1.21246 1.01452 1.19472 0.85404 0.96947 0.95338 1.20628 1.01438 1.00758 0.92758 1.20771 0.94025 0.94823 0.96358 1.25339 1.04128 0.88376 1.00723 1.86583 1.30795 1.22743 1.95424 0.93874 0.87159 0.73755 0.73107 1.21359 0.97271 1.01621 0.96418 1.22484 0.94121 0.94000 0.90388 1.46383 1.05643 1.35648 1.16025 1.77550 1.22018 1.19916 0.96270 1.24597 0.88210 0.93676 0.98352 1.21706 0.94445 1.04705 0.94062 1.21513 0.95343 0.97226 1.00901 0.73534 0.89816 0.88861 0.91021 0.92816 0.93557 0.89496 0.74811 0.84701 0.87864 0.74775 1.23090 1.21689 0.76075 0.76864 0.74841 0.88357 0.89676 0.89624 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.62 19.25 74.32 1.43 0.81 16 2 C -0.24 -1.48 13.73 31.13 0.43 -1.05 16 3 C 0.17 0.34 6.22 70.18 0.44 0.78 16 4 O -0.40 -2.16 9.95 -148.98 -1.48 -3.65 16 5 C 0.09 -0.02 2.61 30.60 0.08 0.06 16 6 H 0.09 -0.43 7.79 -2.38 -0.02 -0.45 16 7 C -0.14 -0.25 5.54 30.60 0.17 -0.08 16 8 C -0.12 -0.16 5.49 30.59 0.17 0.00 16 9 C 0.15 0.19 2.45 44.99 0.11 0.30 16 10 H 0.06 0.48 7.57 -2.38 -0.02 0.46 16 11 N -0.71 -0.49 5.07 -446.59 -2.26 -2.76 16 12 C 0.60 5.40 7.75 86.41 0.67 6.07 16 13 O -0.60 -10.49 15.37 -4.42 -0.07 -10.56 16 14 C -0.35 -2.43 6.17 -19.90 -0.12 -2.56 16 15 C 0.15 1.18 6.76 39.49 0.27 1.44 16 16 C -0.14 -0.94 9.35 22.30 0.21 -0.73 16 17 C -0.05 0.06 4.53 -19.81 -0.09 -0.03 16 18 C -0.08 0.16 2.84 71.24 0.20 0.37 16 19 O -0.55 1.60 12.87 -148.98 -1.92 -0.31 16 20 Si 0.82 -3.94 31.96 68.60 2.19 -1.74 16 21 C -0.15 1.29 8.38 22.03 0.18 1.48 16 22 C 0.12 -0.62 11.17 83.30 0.93 0.31 16 23 N -0.27 -0.98 3.86 -187.28 -0.72 -1.70 16 24 N -0.34 -1.50 12.57 -56.62 -0.71 -2.21 16 25 C 0.13 0.16 11.44 85.42 0.98 1.14 16 26 C -0.11 0.51 5.39 30.59 0.16 0.68 16 27 C -0.11 0.14 5.57 30.59 0.17 0.31 16 28 H 0.25 -1.00 7.80 -4.40 -0.03 -1.04 16 29 H 0.08 -0.07 7.87 -2.39 -0.02 -0.09 16 30 H 0.09 -0.24 8.09 -2.39 -0.02 -0.26 16 31 H 0.07 0.07 7.87 -2.39 -0.02 0.05 16 32 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.09 -0.24 8.14 -2.39 -0.02 -0.26 16 35 H 0.41 -2.81 7.52 -92.71 -0.70 -3.50 16 36 H 0.14 1.50 7.01 -2.91 -0.02 1.48 16 37 H 0.10 0.17 7.71 -2.39 -0.02 0.15 16 38 H 0.40 -5.69 8.08 -74.06 -0.60 -6.29 16 39 H -0.30 -1.00 7.11 99.48 0.71 -0.30 16 40 H -0.29 -0.70 7.11 99.48 0.71 0.01 16 41 H 0.22 -4.59 7.31 -2.91 -0.02 -4.62 16 42 H 0.21 -2.78 8.06 -2.91 -0.02 -2.81 16 43 H 0.24 -2.08 7.46 -2.91 -0.02 -2.10 16 44 H 0.10 -0.91 8.14 -2.39 -0.02 -0.93 16 45 H 0.08 -0.45 8.14 -2.39 -0.02 -0.46 16 46 H 0.09 -0.22 8.14 -2.39 -0.02 -0.24 16 47 H 0.06 0.14 8.14 -2.39 -0.02 0.13 16 Total: 0.00 -35.21 397.65 1.16 -34.05 By element: Atomic # 1 Polarization: -20.17 SS G_CDS: -0.25 Total: -20.42 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 6.39 Total: 9.30 kcal Atomic # 7 Polarization: -2.97 SS G_CDS: -3.70 Total: -6.67 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -3.47 Total: -14.52 kcal Atomic # 14 Polarization: -3.94 SS G_CDS: 2.19 Total: -1.74 kcal Total: -35.21 1.16 -34.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14940684_11618758.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.159 kcal (2) G-P(sol) polarization free energy of solvation -35.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds