Wall clock time and date at job start Sun Mar 7 2021 02:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42900 * 109.47016 * 10.25934 * 3 2 1 5 5 C 1.42900 * 113.99691 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.47177 * 30.00735 * 5 4 3 7 7 C 1.53008 * 109.46648 * 150.00197 * 5 4 3 8 8 C 1.53001 * 109.46520 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47211 * 299.99478 * 8 7 5 10 10 H 1.08995 * 109.47868 * 300.00450 * 9 8 7 11 11 N 1.46505 * 109.46919 * 180.02562 * 9 8 7 12 12 C 1.34779 * 119.99472 * 155.00600 * 11 9 8 13 13 O 1.21565 * 120.00490 * 359.97438 * 12 11 9 14 14 C 1.47690 * 119.99583 * 179.97438 * 12 11 9 15 15 C 1.39829 * 120.16730 * 179.97438 * 14 12 11 16 16 F 1.35100 * 120.10676 * 0.02562 * 15 14 12 17 17 C 1.38317 * 119.78030 * 180.02562 * 15 14 12 18 18 C 1.38206 * 120.11904 * 0.02562 * 17 15 14 19 19 C 1.38459 * 120.33647 * 0.02562 * 18 17 15 20 20 C 1.50701 * 119.88639 * 180.02562 * 19 18 17 21 21 O 1.42901 * 109.47354 * 120.00117 * 20 19 18 22 22 Si 1.86297 * 109.47408 * 359.97438 * 20 19 18 23 23 C 1.37854 * 120.22122 * 359.71733 * 19 18 17 24 24 C 1.53000 * 109.46742 * 60.00806 * 9 8 7 25 25 C 1.52993 * 109.47495 * 270.00249 * 5 4 3 26 26 H 4.38441 * 5.44450 * 179.97438 * 4 1 2 27 27 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 28 28 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 29 29 H 1.08996 * 109.47044 * 299.99658 * 7 5 4 30 30 H 1.08995 * 109.47108 * 60.00820 * 7 5 4 31 31 H 1.08999 * 109.47553 * 60.00386 * 8 7 5 32 32 H 1.09004 * 109.46526 * 179.97438 * 8 7 5 33 33 H 0.96995 * 120.00032 * 335.00233 * 11 9 8 34 34 H 1.08005 * 119.93792 * 180.02562 * 17 15 14 35 35 H 1.07999 * 119.83007 * 180.02562 * 18 17 15 36 36 H 1.09008 * 109.46985 * 239.99633 * 20 19 18 37 37 H 0.96701 * 113.99722 * 299.99652 * 21 20 19 38 38 H 1.48498 * 109.99977 * 58.68241 * 22 20 19 39 39 H 1.48505 * 109.99879 * 180.02562 * 22 20 19 40 40 H 1.08000 * 120.06334 * 180.29683 * 23 19 18 41 41 H 1.08998 * 109.47480 * 59.99966 * 24 9 8 42 42 H 1.09003 * 109.47312 * 179.97438 * 24 9 8 43 43 H 1.08995 * 109.47569 * 299.99981 * 25 5 4 44 44 H 1.09004 * 109.47291 * 60.00242 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.3249 -0.2400 5 6 4.5475 -1.4351 -0.2606 6 1 4.9798 -0.6816 0.3977 7 6 4.9581 -2.8284 0.2202 8 6 6.4834 -2.9462 0.1986 9 6 6.9917 -2.7287 -1.2280 10 1 6.5598 -3.4822 -1.8865 11 7 8.4522 -2.8421 -1.2486 12 6 9.0850 -3.1896 -2.3868 13 8 8.4440 -3.4093 -3.3960 14 6 10.5574 -3.3033 -2.4077 15 6 11.2175 -3.6641 -3.5864 16 9 10.5106 -3.9096 -4.7112 17 6 12.5967 -3.7688 -3.5969 18 6 13.3200 -3.5182 -2.4462 19 6 12.6712 -3.1617 -1.2761 20 6 13.4700 -2.8902 -0.0274 21 8 13.2355 -1.5488 0.4059 22 14 15.2834 -3.1189 -0.3881 23 6 11.2976 -3.0481 -1.2513 24 6 6.5810 -1.3354 -1.7087 25 6 5.0553 -1.2177 -1.6874 26 1 -1.0498 -0.0004 0.0001 27 1 3.0090 0.6649 -0.7843 28 1 3.0092 0.3479 0.9672 29 1 4.5964 -2.9832 1.2366 30 1 4.5259 -3.5820 -0.4382 31 1 6.9154 -2.1927 0.8572 32 1 6.7760 -3.9387 0.5416 33 1 8.9637 -2.6671 -0.4433 34 1 13.1093 -4.0469 -4.5060 35 1 14.3967 -3.6010 -2.4597 36 1 13.1656 -3.5837 0.7566 37 1 13.4839 -0.8767 -0.2434 38 1 15.7041 -2.2017 -1.4775 39 1 16.0819 -2.8546 0.8358 40 1 10.7946 -2.7652 -0.3384 41 1 7.0130 -0.5819 -1.0502 42 1 6.9435 -1.1802 -2.7249 43 1 4.6230 -1.9712 -2.3457 44 1 4.7627 -0.2251 -2.0299 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14940684_12335834.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:47:15 Heat of formation + Delta-G solvation = -73.945862 kcal Electronic energy + Delta-G solvation = -28139.314176 eV Core-core repulsion = 23939.326763 eV Total energy + Delta-G solvation = -4199.987412 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -50.02155 -41.55279 -40.47376 -39.74223 -37.96067 -37.53717 -35.20104 -34.03815 -32.73204 -32.28124 -31.91281 -29.78842 -27.74825 -26.62874 -25.48671 -23.90270 -23.62191 -22.52286 -21.63385 -21.08906 -19.49372 -19.18060 -18.37261 -18.30768 -17.93090 -17.56991 -16.98837 -16.87823 -16.67705 -16.38180 -16.16122 -16.00734 -15.86751 -15.67301 -15.06470 -14.98647 -14.77132 -14.54167 -14.38786 -14.30703 -13.81157 -13.58442 -13.48953 -13.28441 -13.20250 -12.86428 -12.65838 -12.39286 -12.29651 -12.20768 -11.88972 -11.74746 -11.71840 -11.36429 -11.32446 -11.17850 -10.63870 -10.50831 -10.37352 -10.12060 -9.82816 -4.87547 -0.50010 -0.03048 1.31865 1.47046 1.60590 1.63854 1.77529 1.91964 2.02388 2.47372 2.85886 3.04878 3.33206 3.44814 3.50649 3.52141 3.56909 3.64869 3.68781 3.97801 3.99843 4.05168 4.10868 4.13947 4.20843 4.27898 4.34054 4.40884 4.44611 4.48705 4.57211 4.62779 4.76373 4.78563 4.83476 4.90163 4.95300 4.99412 5.00320 5.07787 5.10880 5.13642 5.20920 5.24646 5.40443 5.59676 6.17820 6.36252 6.50829 6.55622 7.05168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.237 4.237 3 C 0.167 3.833 4 O -0.399 6.399 5 C 0.089 3.911 6 H 0.089 0.911 7 C -0.112 4.112 8 C -0.112 4.112 9 C 0.143 3.857 10 H 0.064 0.936 11 N -0.704 5.704 12 C 0.554 3.446 13 O -0.572 6.572 14 C -0.189 4.189 15 C 0.132 3.868 16 F -0.138 7.138 17 C -0.153 4.153 18 C -0.051 4.051 19 C -0.131 4.131 20 C -0.073 4.073 21 O -0.543 6.543 22 Si 0.758 3.242 23 C -0.023 4.023 24 C -0.119 4.119 25 C -0.136 4.136 26 H 0.248 0.752 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.416 0.584 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.139 0.861 37 H 0.388 0.612 38 H -0.280 1.280 39 H -0.306 1.306 40 H 0.161 0.839 41 H 0.087 0.913 42 H 0.047 0.953 43 H 0.054 0.946 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.448 0.709 5.775 7.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.237 4.237 3 C 0.092 3.908 4 O -0.319 6.319 5 C 0.032 3.968 6 H 0.107 0.893 7 C -0.150 4.150 8 C -0.149 4.149 9 C 0.039 3.961 10 H 0.082 0.918 11 N -0.356 5.356 12 C 0.342 3.658 13 O -0.452 6.452 14 C -0.193 4.193 15 C 0.111 3.889 16 F -0.116 7.116 17 C -0.171 4.171 18 C -0.069 4.069 19 C -0.132 4.132 20 C -0.183 4.183 21 O -0.352 6.352 22 Si 0.664 3.336 23 C -0.042 4.042 24 C -0.158 4.158 25 C -0.174 4.174 26 H 0.264 0.736 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.106 0.894 33 H 0.255 0.745 34 H 0.183 0.817 35 H 0.184 0.816 36 H 0.156 0.844 37 H 0.238 0.762 38 H -0.206 1.206 39 H -0.234 1.234 40 H 0.178 0.822 41 H 0.106 0.894 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.402 0.454 5.508 7.728 hybrid contribution -0.677 1.328 -0.591 1.604 sum 4.725 1.781 4.917 7.048 Atomic orbital electron populations 1.25852 0.96983 0.96389 0.99579 1.23257 0.95177 1.03345 1.01905 1.19321 0.84104 0.85115 1.02245 1.87969 1.22599 1.28164 1.93201 1.22304 0.79458 0.99063 0.95930 0.89306 1.21511 0.95201 0.95479 1.02785 1.21714 0.94578 1.04552 0.94104 1.21061 0.78933 0.97381 0.98745 0.91760 1.45806 1.07903 1.69483 1.12419 1.18351 0.87418 0.76451 0.83602 1.90846 1.68327 1.51363 1.34689 1.20068 0.93187 1.10665 0.95338 1.18243 0.90658 0.98172 0.81790 1.91558 1.79284 1.91069 1.49715 1.21379 0.90409 1.03401 1.01953 1.21383 1.01250 0.93708 0.90539 1.20407 0.94073 1.02238 0.96442 1.25143 1.09925 0.86424 0.96761 1.86594 1.86655 1.15258 1.46663 0.94161 0.71980 0.90221 0.77225 1.21201 0.93505 0.93269 0.96200 1.21799 0.95234 0.97220 1.01540 1.21965 0.95148 1.02546 0.97790 0.73565 0.89800 0.88879 0.89550 0.92179 0.88449 0.89428 0.74542 0.81667 0.81601 0.84363 0.76246 1.20600 1.23383 0.82166 0.89426 0.93448 0.92695 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.56 19.25 74.32 1.43 0.87 16 2 C -0.24 -1.37 13.73 31.13 0.43 -0.95 16 3 C 0.17 0.25 6.22 70.18 0.44 0.69 16 4 O -0.40 -1.89 9.95 -148.98 -1.48 -3.37 16 5 C 0.09 -0.09 2.61 30.59 0.08 -0.01 16 6 H 0.09 -0.49 7.79 -2.39 -0.02 -0.51 16 7 C -0.11 0.25 5.57 30.60 0.17 0.42 16 8 C -0.11 0.64 5.39 30.59 0.16 0.80 16 9 C 0.14 0.01 2.45 44.99 0.11 0.12 16 10 H 0.06 0.42 7.57 -2.39 -0.02 0.40 16 11 N -0.70 0.65 5.03 -445.56 -2.24 -1.59 16 12 C 0.55 3.86 7.73 86.74 0.67 4.53 16 13 O -0.57 -9.75 15.00 -3.92 -0.06 -9.81 16 14 C -0.19 -0.51 5.88 -20.05 -0.12 -0.63 16 15 C 0.13 0.65 7.29 22.67 0.17 0.81 16 16 F -0.14 -1.71 15.55 44.97 0.70 -1.01 16 17 C -0.15 0.39 10.01 22.28 0.22 0.61 16 18 C -0.05 0.35 8.66 22.31 0.19 0.55 16 19 C -0.13 0.87 5.39 -19.90 -0.11 0.76 16 20 C -0.07 0.60 2.82 71.24 0.20 0.80 16 21 O -0.54 2.79 12.76 -148.98 -1.90 0.89 16 22 Si 0.76 -5.86 29.78 68.60 2.04 -3.82 16 23 C -0.02 0.11 9.09 22.52 0.20 0.31 16 24 C -0.12 -0.04 5.50 30.61 0.17 0.12 16 25 C -0.14 -0.14 5.54 30.61 0.17 0.03 16 26 H 0.25 -1.08 7.80 -4.43 -0.03 -1.11 16 27 H 0.08 -0.11 7.87 -2.39 -0.02 -0.13 16 28 H 0.09 -0.28 8.08 -2.39 -0.02 -0.30 16 29 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 30 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.10 -0.98 8.14 -2.39 -0.02 -1.00 16 32 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 33 H 0.42 -3.31 6.64 -92.71 -0.62 -3.92 16 34 H 0.17 -1.06 8.06 -2.91 -0.02 -1.08 16 35 H 0.17 -2.01 4.86 -2.91 -0.01 -2.03 16 36 H 0.14 -1.48 7.96 -2.38 -0.02 -1.50 16 37 H 0.39 -3.87 8.70 -74.06 -0.64 -4.51 16 38 H -0.28 1.09 7.11 99.48 0.71 1.80 16 39 H -0.31 -0.39 7.11 99.48 0.71 0.32 16 40 H 0.16 -1.54 6.41 -2.91 -0.02 -1.56 16 41 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 42 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 44 H 0.07 0.01 7.87 -2.39 -0.02 0.00 16 Total: 0.00 -26.12 372.01 1.47 -24.66 By element: Atomic # 1 Polarization: -15.62 SS G_CDS: -0.18 Total: -15.80 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 4.59 Total: 9.86 kcal Atomic # 7 Polarization: 0.65 SS G_CDS: -2.24 Total: -1.59 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -3.44 Total: -12.30 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.70 Total: -1.01 kcal Atomic # 14 Polarization: -5.86 SS G_CDS: 2.04 Total: -3.82 kcal Total: -26.12 1.47 -24.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14940684_12335834.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.288 kcal (2) G-P(sol) polarization free energy of solvation -26.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds