Wall clock time and date at job start Sun Mar 7 2021 02:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 O 1.42905 * 109.47013 * 109.01969 * 3 2 1 5 5 C 1.42895 * 114.00128 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47064 * 330.01060 * 5 4 3 7 7 C 1.53006 * 109.47000 * 90.00194 * 5 4 3 8 8 C 1.52997 * 109.47164 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.46978 * 299.99874 * 8 7 5 10 10 H 1.08992 * 109.47056 * 300.00064 * 9 8 7 11 11 N 1.46505 * 109.46958 * 180.02562 * 9 8 7 12 12 C 1.34777 * 119.99797 * 84.99979 * 11 9 8 13 13 O 1.21700 * 119.99930 * 0.02562 * 12 11 9 14 14 C 1.46427 * 119.99696 * 179.97438 * 12 11 9 15 15 C 1.34814 * 119.99845 * 180.02562 * 14 12 11 16 16 C 1.47207 * 119.99849 * 180.02562 * 15 14 12 17 17 C 1.39827 * 120.17056 * 359.72123 * 16 15 14 18 18 C 1.37892 * 119.82436 * 179.78931 * 17 16 15 19 19 C 1.38405 * 120.17184 * 0.46845 * 18 17 16 20 20 C 1.50700 * 119.82824 * 179.76383 * 19 18 17 21 21 O 1.42900 * 109.47063 * 120.02066 * 20 19 18 22 22 Si 1.86301 * 109.47009 * 0.02562 * 20 19 18 23 23 C 1.38404 * 120.34230 * 359.78479 * 19 18 17 24 24 C 1.37890 * 120.17047 * 359.97438 * 23 19 18 25 25 C 1.52996 * 109.46891 * 60.00410 * 9 8 7 26 26 C 1.52997 * 109.47503 * 210.00358 * 5 4 3 27 27 H 4.38455 * 5.44501 * 180.02562 * 4 1 2 28 28 H 1.09001 * 109.47125 * 349.02776 * 3 2 1 29 29 H 1.08996 * 109.47172 * 229.02088 * 3 2 1 30 30 H 1.09001 * 109.47002 * 59.99969 * 7 5 4 31 31 H 1.09000 * 109.47050 * 300.00235 * 7 5 4 32 32 H 1.09002 * 109.47045 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47375 * 59.99966 * 8 7 5 34 34 H 0.97001 * 119.99745 * 265.00017 * 11 9 8 35 35 H 1.07997 * 120.00575 * 0.02562 * 14 12 11 36 36 H 1.07997 * 119.99580 * 0.02562 * 15 14 12 37 37 H 1.08002 * 120.08842 * 0.02817 * 17 16 15 38 38 H 1.07999 * 119.91749 * 180.23210 * 18 17 16 39 39 H 1.08991 * 109.46994 * 240.02113 * 20 19 18 40 40 H 0.96696 * 114.00160 * 179.97438 * 21 20 19 41 41 H 1.48494 * 110.00068 * 60.00082 * 22 20 19 42 42 H 1.48501 * 109.99825 * 181.31933 * 22 20 19 43 43 H 1.07993 * 119.91207 * 180.02562 * 23 19 18 44 44 H 1.07999 * 120.08656 * 179.97438 * 24 23 19 45 45 H 1.09004 * 109.47368 * 179.97438 * 25 9 8 46 46 H 1.09001 * 109.47372 * 59.99964 * 25 9 8 47 47 H 1.09002 * 109.47153 * 60.00043 * 26 5 4 48 48 H 1.09001 * 109.46832 * 300.00234 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1221 0.4400 -1.2738 5 6 4.5466 0.4779 -1.3803 6 1 4.9788 0.6843 -0.4012 7 6 5.0562 -0.8724 -1.8883 8 6 6.5814 -0.8320 -2.0018 9 6 6.9909 0.2692 -2.9820 10 1 6.5590 0.0629 -3.9612 11 7 8.4514 0.3075 -3.0911 12 6 9.0846 -0.5147 -3.9510 13 8 8.4432 -1.2885 -4.6372 14 6 10.5443 -0.4760 -4.0605 15 6 11.1777 -1.2980 -4.9210 16 6 12.6452 -1.2595 -5.0307 17 6 13.3852 -0.3677 -4.2482 18 6 14.7598 -0.3407 -4.3535 19 6 15.4065 -1.1865 -5.2378 20 6 16.9087 -1.1468 -5.3504 21 8 17.4454 -2.4288 -5.0178 22 14 17.5857 0.1329 -4.1779 23 6 14.6806 -2.0683 -6.0195 24 6 13.3058 -2.1107 -5.9220 25 6 6.4814 1.6194 -2.4739 26 6 4.9556 1.5790 -2.3607 27 1 -1.0501 0.0001 0.0002 28 1 3.0098 -1.0081 0.1956 29 1 3.0090 0.6747 0.7758 30 1 4.6240 -1.0788 -2.8674 31 1 4.7648 -1.6568 -1.1898 32 1 6.9444 -1.7938 -2.3641 33 1 7.0133 -0.6257 -1.0225 34 1 8.9625 0.9245 -2.5444 35 1 11.1135 0.2110 -3.4519 36 1 10.6084 -1.9847 -5.5299 37 1 12.8817 0.2955 -3.5604 38 1 15.3331 0.3448 -3.7471 39 1 17.1898 -0.8890 -6.3714 40 1 18.4098 -2.4768 -5.0694 41 1 17.2093 -0.2073 -2.7823 42 1 19.0638 0.2043 -4.3022 43 1 15.1923 -2.7255 -6.7069 44 1 12.7407 -2.7990 -6.5330 45 1 6.7734 2.4040 -3.1719 46 1 6.9133 1.8257 -1.4946 47 1 4.5926 2.5410 -1.9988 48 1 4.5234 1.3725 -3.3398 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14940684_12360594.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:47:55 Heat of formation + Delta-G solvation = -16.937517 kcal Electronic energy + Delta-G solvation = -27605.864404 eV Core-core repulsion = 23594.039275 eV Total energy + Delta-G solvation = -4011.825129 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.166 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.21816 -40.54920 -39.93529 -38.01513 -37.78443 -35.15778 -35.01211 -33.91962 -32.23410 -31.87685 -31.44147 -29.85511 -27.83277 -26.95786 -24.37880 -23.95440 -23.77312 -22.76707 -21.75116 -21.30119 -20.30061 -19.35777 -18.63337 -18.52012 -17.91709 -17.58172 -17.17716 -16.74521 -16.57052 -16.27588 -16.09893 -15.89994 -15.51078 -15.28647 -14.98895 -14.84167 -14.75317 -14.36892 -14.26783 -14.05993 -13.85563 -13.75835 -13.61166 -13.42034 -13.23453 -13.00563 -12.65137 -12.37109 -12.29585 -12.17272 -12.04010 -11.85570 -11.74586 -11.70437 -11.34501 -11.32403 -11.28122 -11.02128 -10.50477 -10.44382 -10.08760 -9.97425 -9.22014 -4.92830 -0.53872 0.40227 0.89185 1.29991 1.48284 1.60820 1.78365 1.95212 2.16791 2.25129 2.78800 2.88161 3.35782 3.51945 3.56586 3.62877 3.72209 3.76564 3.84716 3.95029 4.02755 4.08635 4.14757 4.18989 4.23038 4.25197 4.31040 4.33573 4.37998 4.40701 4.44465 4.46801 4.55821 4.63278 4.80763 4.84702 4.92195 4.97951 5.01561 5.03160 5.09880 5.11197 5.14064 5.17244 5.27117 5.29735 5.39783 5.48647 5.52649 5.60764 5.90127 6.19509 6.56243 6.56522 6.58109 7.25358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.237 4.237 3 C 0.167 3.833 4 O -0.400 6.400 5 C 0.089 3.911 6 H 0.089 0.911 7 C -0.137 4.137 8 C -0.119 4.119 9 C 0.142 3.858 10 H 0.061 0.939 11 N -0.706 5.706 12 C 0.541 3.459 13 O -0.593 6.593 14 C -0.206 4.206 15 C -0.022 4.022 16 C -0.082 4.082 17 C -0.093 4.093 18 C -0.124 4.124 19 C -0.076 4.076 20 C -0.092 4.092 21 O -0.559 6.559 22 Si 0.768 3.232 23 C -0.109 4.109 24 C -0.104 4.104 25 C -0.111 4.111 26 C -0.112 4.112 27 H 0.248 0.752 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.087 0.913 34 H 0.420 0.580 35 H 0.166 0.834 36 H 0.120 0.880 37 H 0.161 0.839 38 H 0.149 0.851 39 H 0.095 0.905 40 H 0.395 0.605 41 H -0.296 1.296 42 H -0.289 1.289 43 H 0.129 0.871 44 H 0.137 0.863 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.084 0.916 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.865 6.418 3.364 8.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.237 4.237 3 C 0.092 3.908 4 O -0.320 6.320 5 C 0.033 3.967 6 H 0.106 0.894 7 C -0.175 4.175 8 C -0.158 4.158 9 C 0.038 3.962 10 H 0.080 0.920 11 N -0.357 5.357 12 C 0.332 3.668 13 O -0.476 6.476 14 C -0.227 4.227 15 C -0.042 4.042 16 C -0.082 4.082 17 C -0.111 4.111 18 C -0.141 4.141 19 C -0.076 4.076 20 C -0.200 4.200 21 O -0.369 6.369 22 Si 0.673 3.327 23 C -0.127 4.127 24 C -0.122 4.122 25 C -0.149 4.149 26 C -0.151 4.151 27 H 0.265 0.735 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.257 0.743 35 H 0.184 0.816 36 H 0.138 0.862 37 H 0.179 0.821 38 H 0.166 0.834 39 H 0.113 0.887 40 H 0.246 0.754 41 H -0.223 1.223 42 H -0.216 1.216 43 H 0.147 0.853 44 H 0.155 0.845 45 H 0.104 0.896 46 H 0.115 0.885 47 H 0.103 0.897 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.187 5.977 3.498 7.624 hybrid contribution 0.742 -1.459 -0.117 1.641 sum 3.929 4.518 3.380 6.876 Atomic orbital electron populations 1.25870 0.96990 0.99351 0.96633 1.23265 0.95183 1.02007 1.03231 1.19319 0.84101 1.00928 0.86430 1.87967 1.22697 1.87798 1.33570 1.22307 0.79393 0.94813 1.00235 0.89350 1.21966 0.95405 0.98186 1.01967 1.21792 0.95011 0.98586 1.00377 1.20993 0.79746 0.96376 0.99133 0.92044 1.45805 1.07583 1.40388 1.41943 1.18772 0.89109 0.79835 0.79130 1.90823 1.69270 1.41011 1.46481 1.23032 0.92164 1.03953 1.03516 1.22342 0.92172 0.95195 0.94515 1.19119 0.92352 0.98270 0.98478 1.21643 0.93424 0.97712 0.98300 1.21143 0.95172 0.99558 0.98217 1.19712 0.94124 0.97032 0.96722 1.25118 0.93687 0.92970 1.08230 1.86542 1.27541 1.30995 1.91861 0.94156 0.77956 0.84588 0.75987 1.21075 0.93741 0.98291 0.99586 1.21612 0.94579 0.98291 0.97725 1.21707 0.94349 0.95186 1.03633 1.21528 0.95451 0.98682 0.99395 0.73542 0.89794 0.88881 0.92771 0.91038 0.93368 0.89490 0.74271 0.81641 0.86159 0.82143 0.83407 0.88698 0.75445 1.22349 1.21610 0.85316 0.84548 0.89561 0.88484 0.89702 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.54 19.25 74.32 1.43 0.89 16 2 C -0.24 -1.34 13.73 31.12 0.43 -0.92 16 3 C 0.17 0.23 6.22 70.18 0.44 0.67 16 4 O -0.40 -1.87 9.95 -148.98 -1.48 -3.35 16 5 C 0.09 -0.10 2.61 30.60 0.08 -0.02 16 6 H 0.09 -0.51 7.79 -2.39 -0.02 -0.52 16 7 C -0.14 -0.09 5.54 30.60 0.17 0.07 16 8 C -0.12 0.03 5.49 30.59 0.17 0.20 16 9 C 0.14 -0.11 2.45 44.99 0.11 0.00 16 10 H 0.06 0.36 7.57 -2.39 -0.02 0.34 16 11 N -0.71 1.91 5.07 -446.76 -2.27 -0.36 16 12 C 0.54 2.20 7.71 86.38 0.67 2.87 16 13 O -0.59 -8.40 15.89 -4.35 -0.07 -8.47 16 14 C -0.21 0.26 9.41 23.62 0.22 0.48 16 15 C -0.02 -0.04 9.46 23.84 0.23 0.19 16 16 C -0.08 -0.07 5.87 -20.15 -0.12 -0.19 16 17 C -0.09 0.23 9.41 22.57 0.21 0.44 16 18 C -0.12 0.19 8.65 22.23 0.19 0.38 16 19 C -0.08 -0.09 5.43 -19.79 -0.11 -0.20 16 20 C -0.09 0.13 2.81 71.24 0.20 0.33 16 21 O -0.56 -1.00 12.74 -148.98 -1.90 -2.89 16 22 Si 0.77 -2.67 29.77 68.60 2.04 -0.63 16 23 C -0.11 -0.27 9.59 22.23 0.21 -0.06 16 24 C -0.10 -0.21 9.80 22.57 0.22 0.01 16 25 C -0.11 0.69 5.39 30.61 0.17 0.85 16 26 C -0.11 0.27 5.58 30.61 0.17 0.44 16 27 H 0.25 -1.12 7.80 -4.41 -0.03 -1.16 16 28 H 0.08 -0.12 7.87 -2.39 -0.02 -0.14 16 29 H 0.09 -0.29 8.08 -2.39 -0.02 -0.31 16 30 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.07 0.00 7.87 -2.39 -0.02 -0.02 16 32 H 0.05 0.25 8.14 -2.39 -0.02 0.24 16 33 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 34 H 0.42 -4.26 8.58 -92.71 -0.80 -5.06 16 35 H 0.17 -1.52 6.07 -2.91 -0.02 -1.54 16 36 H 0.12 0.57 7.52 -2.91 -0.02 0.55 16 37 H 0.16 -1.45 6.17 -2.91 -0.02 -1.47 16 38 H 0.15 -0.89 4.85 -2.91 -0.01 -0.90 16 39 H 0.10 -0.48 7.96 -2.39 -0.02 -0.50 16 40 H 0.40 -2.44 8.74 -74.06 -0.65 -3.08 16 41 H -0.30 -1.01 7.11 99.48 0.71 -0.31 16 42 H -0.29 -0.31 7.11 99.48 0.71 0.39 16 43 H 0.13 0.19 8.06 -2.91 -0.02 0.16 16 44 H 0.14 -0.04 8.06 -2.91 -0.02 -0.06 16 45 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 46 H 0.10 -1.02 8.14 -2.39 -0.02 -1.04 16 47 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 48 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 Total: 0.00 -25.68 402.03 0.98 -24.70 By element: Atomic # 1 Polarization: -15.03 SS G_CDS: -0.43 Total: -15.46 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 5.08 Total: 6.45 kcal Atomic # 7 Polarization: 1.91 SS G_CDS: -2.27 Total: -0.36 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: -3.45 Total: -14.71 kcal Atomic # 14 Polarization: -2.67 SS G_CDS: 2.04 Total: -0.63 kcal Total: -25.68 0.98 -24.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14940684_12360594.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.766 kcal (2) G-P(sol) polarization free energy of solvation -25.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds