Wall clock time and date at job start Sun Mar 7 2021 02:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47256 * 40.96109 * 3 2 1 5 5 C 1.42902 * 113.99821 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47273 * 29.99882 * 5 4 3 7 7 C 1.52994 * 109.47228 * 149.99942 * 5 4 3 8 8 C 1.53001 * 109.47446 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47021 * 300.00339 * 8 7 5 10 10 H 1.09003 * 109.46632 * 299.99318 * 9 8 7 11 11 N 1.46498 * 109.47175 * 179.97438 * 9 8 7 12 12 C 1.34775 * 119.99956 * 154.99305 * 11 9 8 13 13 O 1.21580 * 120.00057 * 359.73259 * 12 11 9 14 14 C 1.47665 * 120.00098 * 179.97438 * 12 11 9 15 15 C 1.40004 * 120.45264 * 353.77255 * 14 12 11 16 16 N 1.31312 * 121.37985 * 179.97438 * 15 14 12 17 17 C 1.32827 * 121.88979 * 359.97438 * 16 15 14 18 18 N 1.37147 * 132.96998 * 179.97438 * 17 16 15 19 19 C 1.36953 * 110.11584 * 180.02562 * 18 17 16 20 20 C 1.34179 * 109.94843 * 359.97438 * 19 18 17 21 21 C 1.50703 * 126.59621 * 180.02562 * 20 19 18 22 22 O 1.42898 * 109.46951 * 254.97504 * 21 20 19 23 23 Si 1.86301 * 109.46970 * 14.97320 * 21 20 19 24 24 C 1.41022 * 120.07574 * 359.97438 * 17 16 15 25 25 C 1.39280 * 119.62409 * 359.77208 * 24 17 16 26 26 C 1.50704 * 121.02855 * 180.22829 * 25 24 17 27 27 C 1.52994 * 109.47287 * 59.99564 * 9 8 7 28 28 C 1.53001 * 109.47446 * 300.00176 * 27 9 8 29 29 H 4.38445 * 5.44385 * 180.02562 * 4 1 2 30 30 H 1.09009 * 109.46960 * 280.95709 * 3 2 1 31 31 H 1.09000 * 109.46841 * 160.96550 * 3 2 1 32 32 H 1.09003 * 109.47486 * 59.99769 * 7 5 4 33 33 H 1.09003 * 109.47338 * 299.99889 * 7 5 4 34 34 H 1.08998 * 109.47550 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.46860 * 59.99517 * 8 7 5 36 36 H 0.97000 * 120.00105 * 335.00421 * 11 9 8 37 37 H 1.08002 * 119.31290 * 359.97027 * 15 14 12 38 38 H 0.97001 * 124.94660 * 0.02562 * 18 17 16 39 39 H 1.07999 * 125.02355 * 179.97438 * 19 18 17 40 40 H 1.08994 * 109.46875 * 134.97383 * 21 20 19 41 41 H 0.96696 * 114.00430 * 60.00238 * 22 21 20 42 42 H 1.48498 * 109.99823 * 180.02562 * 23 21 20 43 43 H 1.48498 * 109.99878 * 301.31731 * 23 21 20 44 44 H 1.09000 * 109.47177 * 263.95930 * 26 25 24 45 45 H 1.08998 * 109.47367 * 23.96427 * 26 25 24 46 46 H 1.08996 * 109.46920 * 143.96660 * 26 25 24 47 47 H 1.08997 * 109.47043 * 60.00247 * 27 9 8 48 48 H 1.09003 * 109.47338 * 180.02562 * 27 9 8 49 49 H 1.09003 * 109.46860 * 300.00483 * 28 27 9 50 50 H 1.08998 * 109.47550 * 179.97438 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1228 -1.0165 -0.8832 5 6 4.5474 -1.1014 -0.9567 6 1 4.9795 -0.7900 -0.0057 7 6 4.9576 -2.5449 -1.2548 8 6 6.4829 -2.6357 -1.3341 9 6 6.9909 -1.7202 -2.4498 10 1 6.5585 -2.0319 -3.4006 11 7 8.4514 -1.8067 -2.5254 12 6 9.0842 -1.5246 -3.6814 13 8 8.4427 -1.2031 -4.6629 14 6 10.5564 -1.6112 -3.7575 15 6 11.3131 -1.8578 -2.6057 16 7 12.6229 -1.9389 -2.6524 17 6 13.2949 -1.7926 -3.7888 18 7 14.6309 -1.8309 -4.0964 19 6 14.8119 -1.6163 -5.4369 20 6 13.6250 -1.4352 -6.0359 21 6 13.3888 -1.1721 -7.5009 22 8 13.0563 0.2047 -7.6899 23 14 14.9335 -1.5755 -8.4611 24 6 12.6029 -1.5428 -4.9919 25 6 11.2129 -1.4555 -4.9813 26 6 10.4411 -1.1948 -6.2492 27 6 6.5807 -0.2768 -2.1517 28 6 5.0555 -0.1859 -2.0724 29 1 -1.0498 -0.0001 -0.0003 30 1 3.0094 -0.1945 1.0090 31 1 3.0088 0.9723 -0.3352 32 1 4.5255 -2.8564 -2.2058 33 1 4.5953 -3.1971 -0.4602 34 1 6.7751 -3.6640 -1.5470 35 1 6.9153 -2.3240 -0.3833 36 1 8.9630 -2.0671 -1.7435 37 1 10.8091 -1.9839 -1.6588 38 1 15.3439 -1.9873 -3.4576 39 1 15.7685 -1.5959 -5.9377 40 1 12.5680 -1.7960 -7.8543 41 1 13.7431 0.8191 -7.3968 42 1 14.7138 -1.3196 -9.9073 43 1 16.0677 -0.7540 -7.9671 44 1 10.2269 -0.1292 -6.3315 45 1 11.0332 -1.5137 -7.1070 46 1 9.5051 -1.7528 -6.2261 47 1 7.0132 0.0348 -1.2009 48 1 6.9423 0.3754 -2.9468 49 1 4.6231 -0.4976 -3.0232 50 1 4.7633 0.8423 -1.8595 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14940684_12890568.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:48:23 Heat of formation + Delta-G solvation = 16.772291 kcal Electronic energy + Delta-G solvation = -32964.818038 eV Core-core repulsion = 28539.839095 eV Total energy + Delta-G solvation = -4424.978943 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.173 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.85744 -41.27256 -40.10964 -38.82500 -37.98752 -37.72223 -35.35816 -34.84175 -33.96628 -31.97851 -31.85434 -31.38507 -29.61606 -28.84907 -27.66985 -26.44327 -24.81210 -24.07207 -23.81268 -22.93638 -21.70124 -21.14982 -20.64927 -19.42837 -19.28826 -18.75751 -17.90261 -17.75301 -17.59987 -17.14806 -16.74730 -16.61713 -16.52421 -16.31696 -15.90690 -15.63672 -15.50046 -15.28686 -14.99486 -14.86876 -14.66809 -14.32803 -14.14779 -14.01451 -13.78278 -13.70666 -13.62064 -13.44917 -13.29413 -13.21897 -13.10821 -12.60093 -12.44271 -12.33059 -12.14882 -11.84270 -11.79195 -11.68989 -11.33115 -11.30375 -11.22895 -11.14884 -10.55766 -10.43606 -10.26777 -10.09479 -9.61668 -9.12869 -4.84526 -0.34382 -0.07455 1.34829 1.41368 1.48893 1.62130 1.68466 1.78836 1.81042 2.04524 2.05817 2.76129 2.88737 3.31303 3.44276 3.53188 3.55851 3.60911 3.64278 3.71786 3.72941 3.75536 4.03846 4.10392 4.13564 4.17343 4.25496 4.27086 4.30089 4.32805 4.37282 4.40393 4.46475 4.48023 4.60253 4.64133 4.70644 4.80088 4.82995 4.93963 5.00678 5.02779 5.05685 5.13130 5.15812 5.17487 5.25053 5.27266 5.31055 5.39955 5.52555 5.73469 6.20746 6.22074 6.50364 6.56949 6.58943 6.83287 7.19525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.236 4.236 3 C 0.167 3.833 4 O -0.400 6.400 5 C 0.089 3.911 6 H 0.088 0.912 7 C -0.112 4.112 8 C -0.113 4.113 9 C 0.146 3.854 10 H 0.067 0.933 11 N -0.708 5.708 12 C 0.570 3.430 13 O -0.566 6.566 14 C -0.241 4.241 15 C 0.182 3.818 16 N -0.515 5.515 17 C 0.289 3.711 18 N -0.560 5.560 19 C 0.090 3.910 20 C -0.197 4.197 21 C -0.060 4.060 22 O -0.550 6.550 23 Si 0.780 3.220 24 C -0.165 4.165 25 C 0.061 3.939 26 C -0.111 4.111 27 C -0.119 4.119 28 C -0.136 4.136 29 H 0.248 0.752 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.414 0.586 37 H 0.196 0.804 38 H 0.438 0.562 39 H 0.220 0.780 40 H 0.110 0.890 41 H 0.384 0.616 42 H -0.309 1.309 43 H -0.259 1.259 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.049 0.951 49 H 0.055 0.945 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.299 -2.739 5.175 8.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.236 4.236 3 C 0.092 3.908 4 O -0.320 6.320 5 C 0.032 3.968 6 H 0.106 0.894 7 C -0.150 4.150 8 C -0.151 4.151 9 C 0.041 3.959 10 H 0.085 0.915 11 N -0.360 5.360 12 C 0.359 3.641 13 O -0.447 6.447 14 C -0.248 4.248 15 C 0.013 3.987 16 N -0.229 5.229 17 C 0.055 3.945 18 N -0.166 5.166 19 C -0.037 4.037 20 C -0.205 4.205 21 C -0.168 4.168 22 O -0.358 6.358 23 Si 0.683 3.317 24 C -0.172 4.172 25 C 0.053 3.947 26 C -0.167 4.167 27 C -0.158 4.158 28 C -0.174 4.174 29 H 0.264 0.736 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.252 0.748 37 H 0.213 0.787 38 H 0.280 0.720 39 H 0.237 0.763 40 H 0.128 0.872 41 H 0.234 0.766 42 H -0.237 1.237 43 H -0.184 1.184 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.100 0.900 47 H 0.105 0.895 48 H 0.068 0.932 49 H 0.074 0.926 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.494 -2.777 4.438 8.341 hybrid contribution -0.530 1.556 0.082 1.646 sum 5.964 -1.221 4.520 7.582 Atomic orbital electron populations 1.25851 0.96986 0.97808 0.98248 1.23267 0.95187 1.02688 1.02486 1.19317 0.84077 0.92465 0.94916 1.87967 1.22713 1.55552 1.65774 1.22316 0.79365 0.96321 0.98788 0.89393 1.21509 0.95361 0.94983 1.03117 1.21719 0.94429 1.00213 0.98688 1.21013 0.79043 0.95705 1.00098 0.91515 1.45799 1.07759 1.69605 1.12857 1.18012 0.86683 0.76312 0.83136 1.90753 1.68256 1.49066 1.36599 1.20520 0.94013 1.14815 0.95453 1.22989 0.87080 0.90775 0.97856 1.66527 1.09849 1.19750 1.26752 1.18773 0.86488 0.99090 0.90158 1.41597 1.04624 1.61028 1.09367 1.22320 1.00154 0.99584 0.81597 1.20712 0.91392 1.12716 0.95644 1.24810 1.12981 0.84885 0.94095 1.86605 1.47365 1.15919 1.85897 0.94130 0.73007 0.89621 0.74958 1.19730 0.92952 1.09324 0.95217 1.20059 0.91731 0.87678 0.95263 1.20983 1.00002 1.02396 0.93345 1.21798 0.95002 0.96418 1.02601 1.21959 0.95375 1.00472 0.99631 0.73581 0.88922 0.89798 0.92176 0.89761 0.89549 0.88472 0.74762 0.78710 0.72025 0.76331 0.87197 0.76650 1.23674 1.18385 0.91330 0.90674 0.89962 0.89539 0.93213 0.92640 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.57 19.25 74.32 1.43 0.86 16 2 C -0.24 -1.37 13.73 31.13 0.43 -0.95 16 3 C 0.17 0.26 6.22 70.18 0.44 0.69 16 4 O -0.40 -1.87 9.95 -148.98 -1.48 -3.36 16 5 C 0.09 -0.10 2.61 30.59 0.08 -0.02 16 6 H 0.09 -0.49 7.79 -2.39 -0.02 -0.51 16 7 C -0.11 0.27 5.57 30.59 0.17 0.44 16 8 C -0.11 0.68 5.39 30.60 0.16 0.85 16 9 C 0.15 -0.12 2.46 44.99 0.11 -0.01 16 10 H 0.07 0.34 7.57 -2.39 -0.02 0.32 16 11 N -0.71 1.15 5.03 -445.58 -2.24 -1.09 16 12 C 0.57 3.43 7.68 86.73 0.67 4.10 16 13 O -0.57 -7.68 13.16 -3.97 -0.05 -7.74 16 14 C -0.24 -1.27 5.89 -19.99 -0.12 -1.39 16 15 C 0.18 0.20 10.67 85.20 0.91 1.11 16 16 N -0.52 -2.15 10.37 -191.74 -1.99 -4.14 16 17 C 0.29 1.10 8.42 134.02 1.13 2.23 16 18 N -0.56 1.96 6.04 -192.25 -1.16 0.80 16 19 C 0.09 -0.52 10.44 82.97 0.87 0.35 16 20 C -0.20 0.00 5.57 -18.64 -0.10 -0.10 16 21 C -0.06 0.03 2.07 71.24 0.15 0.18 16 22 O -0.55 -1.76 12.88 -148.98 -1.92 -3.68 16 23 Si 0.78 -3.95 30.83 68.60 2.11 -1.84 16 24 C -0.17 -0.91 6.16 -20.19 -0.12 -1.03 16 25 C 0.06 0.49 5.98 -19.25 -0.12 0.37 16 26 C -0.11 -1.01 8.68 71.24 0.62 -0.39 16 27 C -0.12 0.05 5.49 30.59 0.17 0.22 16 28 C -0.14 -0.07 5.54 30.60 0.17 0.10 16 29 H 0.25 -1.07 7.80 -4.43 -0.03 -1.10 16 30 H 0.09 -0.27 8.09 -2.38 -0.02 -0.29 16 31 H 0.08 -0.11 7.87 -2.39 -0.02 -0.13 16 32 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 34 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 35 H 0.10 -1.01 8.14 -2.39 -0.02 -1.03 16 36 H 0.41 -3.48 6.68 -92.71 -0.62 -4.10 16 37 H 0.20 -1.47 6.44 -2.91 -0.02 -1.49 16 38 H 0.44 -3.96 8.96 -92.71 -0.83 -4.79 16 39 H 0.22 -2.99 6.28 -2.91 -0.02 -3.01 16 40 H 0.11 0.06 6.04 -2.39 -0.01 0.05 16 41 H 0.38 -1.22 8.70 -74.06 -0.64 -1.86 16 42 H -0.31 -1.30 7.11 99.48 0.71 -0.59 16 43 H -0.26 1.25 7.00 99.48 0.70 1.94 16 44 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.07 0.52 5.06 -2.39 -0.01 0.51 16 46 H 0.08 0.97 5.96 -2.39 -0.01 0.95 16 47 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 48 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 49 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 50 H 0.07 0.00 7.87 -2.39 -0.02 -0.02 16 Total: 0.00 -27.86 406.41 -0.75 -28.61 By element: Atomic # 1 Polarization: -14.10 SS G_CDS: -1.05 Total: -15.16 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 7.03 Total: 7.59 kcal Atomic # 7 Polarization: 0.95 SS G_CDS: -5.39 Total: -4.43 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -3.45 Total: -14.77 kcal Atomic # 14 Polarization: -3.95 SS G_CDS: 2.11 Total: -1.84 kcal Total: -27.86 -0.75 -28.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14940684_12890568.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.382 kcal (2) G-P(sol) polarization free energy of solvation -27.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds