Wall clock time and date at job start Sun Mar 7 2021 02:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 O 1.42910 * 109.47117 * 210.52858 * 3 2 1 5 5 C 1.42893 * 114.00008 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.47317 * 30.00145 * 5 4 3 7 7 C 1.53004 * 109.46993 * 150.00166 * 5 4 3 8 8 C 1.53001 * 109.47060 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47384 * 300.00027 * 8 7 5 10 10 H 1.09004 * 109.47014 * 300.00095 * 9 8 7 11 11 N 1.46495 * 109.47291 * 179.97438 * 9 8 7 12 12 C 1.34777 * 120.00273 * 154.99729 * 11 9 8 13 13 O 1.21631 * 119.99777 * 0.02562 * 12 11 9 14 14 C 1.47261 * 119.99998 * 179.97438 * 12 11 9 15 15 C 1.36762 * 126.94418 * 0.03392 * 14 12 11 16 16 N 1.34665 * 108.39828 * 179.97438 * 15 14 12 17 17 C 1.46500 * 124.85057 * 179.73209 * 16 15 14 18 18 C 1.36452 * 110.29519 * 359.97438 * 16 15 14 19 19 C 1.50698 * 125.56996 * 179.97438 * 18 16 15 20 20 O 1.42902 * 109.47206 * 330.00306 * 19 18 16 21 21 Si 1.86299 * 109.47308 * 210.00070 * 19 18 16 22 22 C 1.34487 * 108.85794 * 0.02562 * 18 16 15 23 23 C 1.53004 * 109.47044 * 59.99963 * 9 8 7 24 24 C 1.52998 * 109.47257 * 270.00075 * 5 4 3 25 25 H 4.38455 * 5.44466 * 179.97438 * 4 1 2 26 26 H 1.09007 * 109.47105 * 90.53222 * 3 2 1 27 27 H 1.08997 * 109.47790 * 330.52823 * 3 2 1 28 28 H 1.08999 * 109.46681 * 59.99984 * 7 5 4 29 29 H 1.08997 * 109.46918 * 299.99889 * 7 5 4 30 30 H 1.09006 * 109.47033 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.47226 * 60.00515 * 8 7 5 32 32 H 0.97004 * 120.00054 * 335.00314 * 11 9 8 33 33 H 1.08003 * 125.80521 * 359.97438 * 15 14 12 34 34 H 1.08996 * 109.46755 * 90.02577 * 17 16 15 35 35 H 1.09003 * 109.46705 * 210.01891 * 17 16 15 36 36 H 1.08997 * 109.47417 * 330.02418 * 17 16 15 37 37 H 1.09009 * 109.47041 * 89.99828 * 19 18 16 38 38 H 0.96699 * 113.99581 * 299.99948 * 20 19 18 39 39 H 1.48497 * 110.00107 * 180.02562 * 21 19 18 40 40 H 1.48499 * 109.99714 * 301.32247 * 21 19 18 41 41 H 1.07993 * 126.83476 * 179.97438 * 22 18 16 42 42 H 1.08999 * 109.46681 * 60.00054 * 23 9 8 43 43 H 1.08997 * 109.46918 * 180.02562 * 23 9 8 44 44 H 1.08999 * 109.47337 * 300.00580 * 24 5 4 45 45 H 1.09006 * 109.47022 * 60.00170 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.1615 0.6844 5 6 4.5463 1.2596 0.7412 6 1 4.9788 0.7815 -0.1377 7 6 4.9550 2.7337 0.7731 8 6 6.4802 2.8387 0.8346 9 6 6.9890 2.1410 2.0975 10 1 6.5562 2.6191 2.9763 11 7 8.4494 2.2411 2.1561 12 6 9.0825 2.1735 3.3440 13 8 8.4413 2.0289 4.3674 14 6 10.5505 2.2735 3.4027 15 6 11.4062 2.4362 2.3483 16 7 12.6647 2.4816 2.8253 17 6 13.8664 2.6415 2.0028 18 6 12.6610 2.3521 4.1836 19 6 13.8812 2.3555 5.0679 20 8 14.9945 1.8258 4.3453 21 14 13.5608 1.3049 6.5726 22 6 11.3904 2.2198 4.6042 23 6 6.5803 0.6669 2.0657 24 6 5.0556 0.5617 2.0039 25 1 -1.0502 -0.0002 -0.0003 26 1 3.0093 0.0104 -1.0277 27 1 3.0098 -0.8938 0.5056 28 1 4.5225 3.2116 1.6521 29 1 4.5922 3.2308 -0.1264 30 1 6.7714 3.8889 0.8578 31 1 6.9131 2.3607 -0.0441 32 1 8.9608 2.3561 1.3398 33 1 11.1211 2.5148 1.3095 34 1 14.0925 3.7020 1.8922 35 1 14.7056 2.1394 2.4842 36 1 13.6953 2.2021 1.0201 37 1 14.1023 3.3769 5.3781 38 1 14.8676 0.9179 4.0377 39 1 14.7565 1.3006 7.4531 40 1 12.3855 1.8268 7.3154 41 1 11.0552 2.0981 5.6235 42 1 7.0131 0.1888 1.1869 43 1 6.9424 0.1699 2.9656 44 1 4.6231 1.0396 2.8829 45 1 4.7644 -0.4885 1.9812 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14940684_13287730.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:48:54 Heat of formation + Delta-G solvation = -6.821976 kcal Electronic energy + Delta-G solvation = -26219.557394 eV Core-core repulsion = 22399.197278 eV Total energy + Delta-G solvation = -3820.360116 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.46522 -40.91278 -39.76460 -37.88835 -37.71800 -34.99410 -33.98278 -33.65420 -31.86073 -31.57749 -29.75990 -27.85885 -27.27720 -26.22310 -24.13870 -23.71924 -22.58171 -21.37102 -20.89664 -20.43677 -19.38772 -18.93633 -17.88810 -17.44325 -17.08921 -16.99382 -16.77218 -16.53519 -16.19159 -15.85222 -15.53046 -15.41545 -15.09087 -14.95979 -14.81215 -14.68872 -14.25533 -14.07511 -13.75216 -13.54030 -13.37459 -13.24111 -13.20838 -12.98850 -12.63608 -12.32587 -12.15884 -12.14163 -12.08989 -11.83372 -11.68784 -11.32020 -11.26704 -10.98475 -10.69566 -10.42749 -10.08297 -9.56571 -9.21604 -5.00578 0.75185 1.02147 1.38403 1.49367 1.62545 1.79365 1.89150 2.05653 2.27010 2.55752 2.90035 3.29358 3.53109 3.55427 3.62981 3.74483 3.89588 3.97364 4.06145 4.11473 4.17213 4.26111 4.30756 4.36260 4.39772 4.42317 4.44621 4.46692 4.49449 4.52823 4.65157 4.81143 4.84563 4.93384 4.96476 5.00616 5.03856 5.05520 5.13053 5.16335 5.30033 5.32736 5.54677 5.63914 5.96566 6.21432 6.25574 6.57499 6.59034 6.68088 7.37154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.236 4.236 3 C 0.167 3.833 4 O -0.400 6.400 5 C 0.090 3.910 6 H 0.091 0.909 7 C -0.113 4.113 8 C -0.110 4.110 9 C 0.144 3.856 10 H 0.057 0.943 11 N -0.710 5.710 12 C 0.587 3.413 13 O -0.599 6.599 14 C -0.262 4.262 15 C 0.078 3.922 16 N -0.421 5.421 17 C 0.045 3.955 18 C -0.015 4.015 19 C -0.033 4.033 20 O -0.544 6.544 21 Si 0.786 3.214 22 C -0.169 4.169 23 C -0.118 4.118 24 C -0.137 4.137 25 H 0.248 0.752 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.415 0.585 33 H 0.213 0.787 34 H 0.073 0.927 35 H 0.118 0.882 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.398 0.602 39 H -0.284 1.284 40 H -0.301 1.301 41 H 0.129 0.871 42 H 0.089 0.911 43 H 0.046 0.954 44 H 0.051 0.949 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.436 -2.668 -9.637 11.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.236 4.236 3 C 0.092 3.908 4 O -0.321 6.321 5 C 0.033 3.967 6 H 0.109 0.891 7 C -0.151 4.151 8 C -0.148 4.148 9 C 0.040 3.960 10 H 0.075 0.925 11 N -0.361 5.361 12 C 0.377 3.623 13 O -0.481 6.481 14 C -0.272 4.272 15 C -0.060 4.060 16 N -0.094 5.094 17 C -0.095 4.095 18 C -0.125 4.125 19 C -0.144 4.144 20 O -0.352 6.352 21 Si 0.691 3.309 22 C -0.194 4.194 23 C -0.156 4.156 24 C -0.175 4.175 25 H 0.264 0.736 26 H 0.112 0.888 27 H 0.103 0.897 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.118 0.882 32 H 0.252 0.748 33 H 0.229 0.771 34 H 0.092 0.908 35 H 0.136 0.864 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.249 0.751 39 H -0.211 1.211 40 H -0.229 1.229 41 H 0.147 0.853 42 H 0.107 0.893 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.418 -2.030 -8.053 9.916 hybrid contribution -0.375 0.586 0.049 0.697 sum 5.043 -1.444 -8.003 9.569 Atomic orbital electron populations 1.25863 0.96989 0.97235 0.98862 1.23278 0.95201 1.02936 1.02199 1.19328 0.84059 0.89302 0.98101 1.87970 1.22716 1.43713 1.77680 1.22299 0.79384 0.97112 0.97867 0.89130 1.21519 0.95430 0.94714 1.03405 1.21697 0.94390 1.01879 0.96831 1.20968 0.79621 0.96062 0.99381 0.92491 1.45683 1.07376 1.74425 1.08600 1.17730 0.86758 0.74618 0.83163 1.90758 1.68740 1.52512 1.36096 1.20292 0.91670 1.20504 0.94730 1.22443 0.82495 1.01291 0.99724 1.43734 1.07536 1.52558 1.05606 1.22806 0.85886 1.04400 0.96367 1.20724 0.95940 1.11190 0.84609 1.24654 0.83578 1.04691 1.01471 1.86428 1.38588 1.35457 1.74711 0.93250 0.75816 0.87928 0.73884 1.21720 0.91534 1.08095 0.98013 1.21773 0.94947 0.96265 1.02637 1.21960 0.95439 1.01411 0.98710 0.73588 0.88812 0.89731 0.92497 0.89656 0.89820 0.88238 0.74772 0.77061 0.90803 0.86381 0.87255 0.86827 0.75097 1.21074 1.22898 0.85343 0.89254 0.93464 0.92997 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.57 19.25 74.32 1.43 0.86 16 2 C -0.24 -1.36 13.73 31.12 0.43 -0.93 16 3 C 0.17 0.23 6.22 70.17 0.44 0.67 16 4 O -0.40 -1.96 9.95 -148.98 -1.48 -3.44 16 5 C 0.09 -0.08 2.61 30.59 0.08 0.00 16 6 H 0.09 -0.53 7.79 -2.38 -0.02 -0.55 16 7 C -0.11 0.20 5.57 30.60 0.17 0.37 16 8 C -0.11 0.59 5.39 30.59 0.16 0.76 16 9 C 0.14 0.11 2.45 44.99 0.11 0.22 16 10 H 0.06 0.46 7.58 -2.38 -0.02 0.44 16 11 N -0.71 0.30 5.07 -445.95 -2.26 -1.95 16 12 C 0.59 5.01 7.77 86.62 0.67 5.68 16 13 O -0.60 -11.49 16.63 -4.13 -0.07 -11.56 16 14 C -0.26 -1.24 6.29 -19.04 -0.12 -1.36 16 15 C 0.08 -0.31 10.83 83.91 0.91 0.60 16 16 N -0.42 1.63 3.09 -533.24 -1.65 -0.02 16 17 C 0.04 -0.46 10.71 127.77 1.37 0.91 16 18 C -0.01 -0.01 6.14 40.98 0.25 0.24 16 19 C -0.03 0.06 2.98 71.24 0.21 0.28 16 20 O -0.54 3.01 9.95 -148.98 -1.48 1.52 16 21 Si 0.79 -0.50 31.29 68.60 2.15 1.65 16 22 C -0.17 -1.13 9.49 23.62 0.22 -0.91 16 23 C -0.12 -0.06 5.49 30.58 0.17 0.10 16 24 C -0.14 -0.17 5.53 30.58 0.17 0.00 16 25 H 0.25 -1.07 7.80 -4.41 -0.03 -1.10 16 26 H 0.09 -0.31 8.09 -2.38 -0.02 -0.33 16 27 H 0.08 -0.13 7.87 -2.39 -0.02 -0.15 16 28 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.08 -0.27 8.14 -2.39 -0.02 -0.28 16 30 H 0.08 -0.49 8.14 -2.38 -0.02 -0.51 16 31 H 0.10 -1.04 8.14 -2.39 -0.02 -1.06 16 32 H 0.41 -3.56 7.55 -92.71 -0.70 -4.25 16 33 H 0.21 -2.85 7.45 -2.91 -0.02 -2.87 16 34 H 0.07 -0.69 8.14 -2.39 -0.02 -0.71 16 35 H 0.12 -1.26 4.92 -2.39 -0.01 -1.27 16 36 H 0.11 -1.65 8.13 -2.39 -0.02 -1.67 16 37 H 0.11 -0.09 7.96 -2.38 -0.02 -0.11 16 38 H 0.40 -5.22 8.37 -74.06 -0.62 -5.84 16 39 H -0.28 -1.31 7.11 99.48 0.71 -0.60 16 40 H -0.30 -2.31 6.77 99.48 0.67 -1.64 16 41 H 0.13 1.32 6.67 -2.91 -0.02 1.31 16 42 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 43 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 45 H 0.07 0.01 7.87 -2.38 -0.02 0.00 16 Total: 0.00 -28.80 373.52 1.57 -27.22 By element: Atomic # 1 Polarization: -20.60 SS G_CDS: -0.31 Total: -20.91 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 6.68 Total: 7.49 kcal Atomic # 7 Polarization: 1.93 SS G_CDS: -3.91 Total: -1.97 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -3.03 Total: -13.48 kcal Atomic # 14 Polarization: -0.50 SS G_CDS: 2.15 Total: 1.65 kcal Total: -28.80 1.57 -27.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14940684_13287730.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.402 kcal (2) G-P(sol) polarization free energy of solvation -28.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds