Wall clock time and date at job start Sun Mar 7 2021 02:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42893 * 109.47471 * 299.83765 * 3 2 1 5 5 C 1.42896 * 114.00041 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.47410 * 330.00265 * 5 4 3 7 7 C 1.53004 * 109.47117 * 90.00412 * 5 4 3 8 8 C 1.52996 * 109.47055 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47287 * 299.99774 * 8 7 5 10 10 H 1.09006 * 109.46769 * 300.00017 * 9 8 7 11 11 N 1.46496 * 109.47566 * 180.02562 * 9 8 7 12 12 C 1.34780 * 120.00020 * 84.99502 * 11 9 8 13 13 O 1.21579 * 120.00377 * 0.02562 * 12 11 9 14 14 C 1.47606 * 119.99935 * 179.97438 * 12 11 9 15 15 C 1.39712 * 120.08699 * 359.97438 * 14 12 11 16 16 C 1.37725 * 119.90883 * 180.02562 * 15 14 12 17 17 C 1.50699 * 119.95466 * 179.97438 * 16 15 14 18 18 C 1.38967 * 120.08916 * 359.72317 * 16 15 14 19 19 O 1.35713 * 119.91532 * 180.27454 * 18 16 15 20 20 C 1.39018 * 120.17759 * 0.55152 * 18 16 15 21 21 C 1.50701 * 119.95904 * 179.72253 * 20 18 16 22 22 O 1.42905 * 109.46937 * 74.72731 * 21 20 18 23 23 Si 1.86299 * 109.47378 * 194.72505 * 21 20 18 24 24 C 1.37685 * 120.08585 * 359.44814 * 20 18 16 25 25 C 1.52999 * 109.47361 * 59.99692 * 9 8 7 26 26 C 1.53001 * 109.46984 * 209.99987 * 5 4 3 27 27 H 4.38450 * 5.44500 * 179.97438 * 4 1 2 28 28 H 1.09006 * 109.46360 * 179.83828 * 3 2 1 29 29 H 1.08995 * 109.46807 * 59.84396 * 3 2 1 30 30 H 1.09000 * 109.46947 * 299.99675 * 7 5 4 31 31 H 1.08995 * 109.47101 * 59.99663 * 7 5 4 32 32 H 1.09009 * 109.47307 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.47722 * 59.99478 * 8 7 5 34 34 H 0.97003 * 120.00200 * 265.00303 * 11 9 8 35 35 H 1.07998 * 120.04805 * 0.04085 * 15 14 12 36 36 H 1.09002 * 109.47083 * 89.99935 * 17 16 15 37 37 H 1.09001 * 109.47390 * 209.99965 * 17 16 15 38 38 H 1.09004 * 109.47282 * 330.00464 * 17 16 15 39 39 H 0.96710 * 113.99889 * 270.27918 * 19 18 16 40 40 H 1.09000 * 109.47120 * 314.72766 * 21 20 18 41 41 H 0.96691 * 114.00079 * 59.99815 * 22 21 20 42 42 H 1.48501 * 109.99913 * 58.68075 * 23 21 20 43 43 H 1.48491 * 110.00401 * 179.97438 * 23 21 20 44 44 H 1.08001 * 120.04223 * 180.29883 * 24 20 18 45 45 H 1.09006 * 109.46913 * 60.00413 * 25 9 8 46 46 H 1.08993 * 109.47207 * 180.02562 * 25 9 8 47 47 H 1.08997 * 109.47095 * 60.00330 * 26 5 4 48 48 H 1.08993 * 109.47229 * 299.99579 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1227 -0.6694 1.1686 5 6 4.5472 -0.7244 1.2667 6 1 4.9799 -0.7424 0.2665 7 6 5.0545 0.5072 2.0197 8 6 6.5797 0.4486 2.1242 9 6 6.9910 -0.8164 2.8800 10 1 6.5587 -0.7986 3.8805 11 7 8.4515 -0.8722 2.9806 12 6 9.0833 -0.2253 3.9800 13 8 8.4413 0.4042 4.7983 14 6 10.5548 -0.2820 4.0817 15 6 11.2943 -1.0062 3.1432 16 6 12.6671 -1.0570 3.2419 17 6 13.4657 -1.8383 2.2305 18 6 13.3171 -0.3846 4.2697 19 8 14.6704 -0.4326 4.3604 20 6 12.5845 0.3323 5.2088 21 6 13.2941 1.0545 6.3251 22 8 13.9179 2.2323 5.8095 23 14 12.0622 1.5291 7.6396 24 6 11.2118 0.3881 5.1171 25 6 6.4837 -2.0480 2.1271 26 6 4.9579 -1.9894 2.0229 27 1 -1.0499 0.0000 0.0003 28 1 3.0088 1.0286 -0.0029 29 1 3.0095 -0.5154 -0.8886 30 1 4.7619 1.4084 1.4810 31 1 4.6218 0.5252 3.0199 32 1 6.9412 1.3263 2.6603 33 1 7.0121 0.4308 1.1237 34 1 8.9638 -1.3747 2.3278 35 1 10.7902 -1.5251 2.3414 36 1 13.7317 -1.1882 1.3970 37 1 14.3736 -2.2179 2.6993 38 1 12.8695 -2.6738 1.8637 39 1 15.0032 -1.1689 4.8918 40 1 14.0522 0.4010 6.7565 41 1 13.3016 2.8608 5.4094 42 1 11.3835 0.3157 8.1614 43 1 12.7495 2.2415 8.7464 44 1 10.6437 0.9493 5.8443 45 1 6.9161 -2.0658 1.1266 46 1 6.7764 -2.9492 2.6658 47 1 4.5966 -2.8668 1.4865 48 1 4.5253 -1.9714 3.0232 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14940684_13287732.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:48:59 Heat of formation + Delta-G solvation = -78.484639 kcal Electronic energy + Delta-G solvation = -29885.676494 eV Core-core repulsion = 25680.726430 eV Total energy + Delta-G solvation = -4204.950064 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.166 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.80412 -40.88522 -39.89849 -38.04480 -37.80180 -37.42171 -35.11757 -34.08178 -33.89307 -32.01978 -31.94826 -29.75326 -28.14238 -27.73984 -26.86505 -24.95498 -23.91703 -22.99524 -22.09993 -21.51142 -21.05720 -19.63684 -19.39953 -18.74687 -18.08945 -17.93825 -17.53936 -16.91836 -16.70162 -16.54029 -16.34740 -16.02519 -15.90078 -15.55317 -15.26605 -15.10048 -14.85664 -14.77021 -14.43913 -14.33438 -14.16597 -13.97507 -13.81854 -13.52815 -13.37877 -13.33612 -13.09173 -12.86979 -12.69981 -12.40009 -12.31197 -12.26058 -12.00963 -11.87931 -11.71298 -11.66266 -11.36121 -11.27710 -10.96058 -10.46485 -10.41850 -10.16225 -10.03110 -9.71045 -4.99237 -0.42429 0.01638 1.25858 1.53536 1.62317 1.67988 1.86913 1.96974 1.98719 2.55876 2.85011 2.99859 3.32330 3.45328 3.45766 3.49713 3.57123 3.64212 3.67971 3.87881 3.94217 4.02808 4.03873 4.12233 4.13013 4.21416 4.23313 4.29631 4.33488 4.38431 4.39791 4.47811 4.54316 4.56667 4.60293 4.68089 4.84772 4.91645 4.93572 4.98239 5.01745 5.01934 5.03591 5.07116 5.18145 5.21698 5.21961 5.39375 5.48682 6.13842 6.38120 6.50380 6.57924 6.63217 7.13055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.199 4.199 3 C 0.173 3.827 4 O -0.375 6.375 5 C 0.089 3.911 6 H 0.065 0.935 7 C -0.140 4.140 8 C -0.127 4.127 9 C 0.143 3.857 10 H 0.094 0.906 11 N -0.723 5.723 12 C 0.562 3.438 13 O -0.529 6.529 14 C -0.138 4.138 15 C -0.066 4.066 16 C -0.118 4.118 17 C -0.110 4.110 18 C 0.160 3.840 19 O -0.483 6.483 20 C -0.152 4.152 21 C -0.055 4.055 22 O -0.531 6.531 23 Si 0.677 3.323 24 C -0.045 4.045 25 C -0.124 4.124 26 C -0.112 4.112 27 H 0.222 0.778 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.399 0.601 35 H 0.132 0.868 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.392 0.608 40 H 0.112 0.888 41 H 0.378 0.622 42 H -0.254 1.254 43 H -0.250 1.250 44 H 0.145 0.855 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.181 -2.772 -4.731 5.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.199 4.199 3 C 0.098 3.902 4 O -0.295 6.295 5 C 0.032 3.968 6 H 0.083 0.917 7 C -0.178 4.178 8 C -0.165 4.165 9 C 0.038 3.962 10 H 0.112 0.888 11 N -0.375 5.375 12 C 0.349 3.651 13 O -0.406 6.406 14 C -0.142 4.142 15 C -0.085 4.085 16 C -0.118 4.118 17 C -0.167 4.167 18 C 0.114 3.886 19 O -0.293 6.293 20 C -0.153 4.153 21 C -0.166 4.166 22 O -0.336 6.336 23 Si 0.578 3.422 24 C -0.063 4.063 25 C -0.162 4.162 26 C -0.151 4.151 27 H 0.239 0.761 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.235 0.765 35 H 0.150 0.850 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.250 0.750 40 H 0.129 0.871 41 H 0.225 0.775 42 H -0.179 1.179 43 H -0.174 1.174 44 H 0.162 0.838 45 H 0.090 0.910 46 H 0.097 0.903 47 H 0.096 0.904 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.120 -2.297 -3.276 4.003 hybrid contribution 0.644 -0.952 -0.563 1.280 sum 0.524 -3.249 -3.840 5.057 Atomic orbital electron populations 1.25049 0.95984 0.99627 0.97933 1.22510 0.93900 1.01383 1.02148 1.19110 0.84830 0.97545 0.88747 1.87997 1.21262 1.77679 1.42550 1.22200 0.80361 0.95341 0.98928 0.91656 1.22009 0.95210 0.98229 1.02351 1.21880 0.95335 0.98487 1.00830 1.21090 0.79090 0.94927 1.01047 0.88754 1.45968 1.07849 1.53425 1.30245 1.18126 0.87027 0.78950 0.80959 1.90815 1.67349 1.41628 1.40826 1.19829 0.93025 1.02908 0.98392 1.21090 0.93009 0.96973 0.97407 1.20222 0.93902 0.99558 0.98165 1.20697 0.99601 0.99093 0.97280 1.18321 0.83169 0.94374 0.92740 1.84828 1.16229 1.53668 1.74611 1.20697 0.93567 1.02272 0.98738 1.24864 1.03395 0.88673 0.99660 1.86555 1.37313 1.29674 1.80086 0.94644 0.82119 0.86363 0.79100 1.20946 0.92605 0.96286 0.96492 1.21786 0.95603 0.97726 1.01045 1.21517 0.94395 0.97094 1.02053 0.76082 0.90801 0.90800 0.91204 0.90456 0.90629 0.91524 0.76522 0.84992 0.90493 0.91030 0.91192 0.75021 0.87087 0.77505 1.17874 1.17412 0.83758 0.90987 0.90320 0.90403 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.21 19.25 29.55 0.57 0.36 16 2 C -0.20 -0.45 13.73 -37.12 -0.51 -0.96 16 3 C 0.17 0.04 6.22 34.37 0.21 0.26 16 4 O -0.38 -0.60 9.95 -35.23 -0.35 -0.95 16 5 C 0.09 -0.10 2.61 -26.73 -0.07 -0.16 16 6 H 0.07 -0.16 7.79 -51.93 -0.40 -0.57 16 7 C -0.14 0.13 5.54 -26.73 -0.15 -0.02 16 8 C -0.13 0.16 5.49 -26.73 -0.15 0.01 16 9 C 0.14 -0.19 2.45 -67.93 -0.17 -0.36 16 10 H 0.09 0.07 7.57 -51.93 -0.39 -0.32 16 11 N -0.72 1.16 5.03 -54.83 -0.28 0.88 16 12 C 0.56 0.72 7.73 -12.44 -0.10 0.62 16 13 O -0.53 -2.50 16.00 5.30 0.08 -2.42 16 14 C -0.14 -0.04 5.87 -104.96 -0.62 -0.65 16 15 C -0.07 0.10 9.18 -39.22 -0.36 -0.26 16 16 C -0.12 0.10 5.89 -104.54 -0.62 -0.52 16 17 C -0.11 0.27 9.78 36.01 0.35 0.62 16 18 C 0.16 0.05 6.66 -39.02 -0.26 -0.21 16 19 O -0.48 -0.04 11.85 -18.84 -0.22 -0.26 16 20 C -0.15 -0.07 5.27 -104.53 -0.55 -0.62 16 21 C -0.05 -0.02 2.37 36.01 0.09 0.06 16 22 O -0.53 -0.71 12.88 -35.23 -0.45 -1.17 16 23 Si 0.68 0.12 29.91 -169.99 -5.09 -4.97 16 24 C -0.04 -0.03 8.20 -39.22 -0.32 -0.35 16 25 C -0.12 0.38 5.39 -26.70 -0.14 0.24 16 26 C -0.11 0.19 5.58 -26.70 -0.15 0.04 16 27 H 0.22 -0.49 7.80 -54.09 -0.42 -0.91 16 28 H 0.07 -0.09 7.87 -51.93 -0.41 -0.50 16 29 H 0.07 -0.12 8.09 -51.93 -0.42 -0.53 16 30 H 0.07 -0.08 7.87 -51.93 -0.41 -0.49 16 31 H 0.08 0.03 8.14 -51.93 -0.42 -0.40 16 32 H 0.08 0.04 8.14 -51.92 -0.42 -0.38 16 33 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 34 H 0.40 -1.69 6.63 -40.82 -0.27 -1.96 16 35 H 0.13 -0.59 6.39 -52.49 -0.34 -0.93 16 36 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 37 H 0.07 -0.19 7.53 -51.93 -0.39 -0.58 16 38 H 0.07 -0.27 8.08 -51.93 -0.42 -0.69 16 39 H 0.39 -1.63 9.06 45.56 0.41 -1.22 16 40 H 0.11 0.02 7.83 -51.93 -0.41 -0.39 16 41 H 0.38 -0.87 8.70 45.56 0.40 -0.47 16 42 H -0.25 -0.69 7.11 56.52 0.40 -0.29 16 43 H -0.25 -0.75 7.11 56.52 0.40 -0.35 16 44 H 0.15 0.04 4.70 -52.49 -0.25 -0.21 16 45 H 0.07 -0.31 8.14 -51.93 -0.42 -0.73 16 46 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 47 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 48 H 0.08 -0.05 8.14 -51.93 -0.42 -0.48 16 LS Contribution 398.09 15.07 6.00 6.00 Total: 0.00 -10.01 398.09 -9.54 -19.55 By element: Atomic # 1 Polarization: -8.49 SS G_CDS: -6.30 Total: -14.79 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -2.93 Total: -1.89 kcal Atomic # 7 Polarization: 1.16 SS G_CDS: -0.28 Total: 0.88 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: -0.94 Total: -4.79 kcal Atomic # 14 Polarization: 0.12 SS G_CDS: -5.09 Total: -4.97 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -10.01 -9.54 -19.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14940684_13287732.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.937 kcal (2) G-P(sol) polarization free energy of solvation -10.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds