Wall clock time and date at job start Sun Mar 7 2021 02:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42893 * 109.47471 * 299.83765 * 3 2 1 5 5 C 1.42896 * 114.00041 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.47410 * 330.00265 * 5 4 3 7 7 C 1.53004 * 109.47117 * 90.00412 * 5 4 3 8 8 C 1.52996 * 109.47055 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47287 * 299.99774 * 8 7 5 10 10 H 1.09006 * 109.46769 * 300.00017 * 9 8 7 11 11 N 1.46496 * 109.47566 * 180.02562 * 9 8 7 12 12 C 1.34780 * 120.00020 * 84.99502 * 11 9 8 13 13 O 1.21579 * 120.00377 * 0.02562 * 12 11 9 14 14 C 1.47606 * 119.99935 * 179.97438 * 12 11 9 15 15 C 1.39712 * 120.08699 * 359.97438 * 14 12 11 16 16 C 1.37725 * 119.90883 * 180.02562 * 15 14 12 17 17 C 1.50699 * 119.95466 * 179.97438 * 16 15 14 18 18 C 1.38967 * 120.08916 * 359.72317 * 16 15 14 19 19 O 1.35713 * 119.91532 * 180.27454 * 18 16 15 20 20 C 1.39018 * 120.17759 * 0.55152 * 18 16 15 21 21 C 1.50701 * 119.95904 * 179.72253 * 20 18 16 22 22 O 1.42905 * 109.46937 * 74.72731 * 21 20 18 23 23 Si 1.86299 * 109.47378 * 194.72505 * 21 20 18 24 24 C 1.37685 * 120.08585 * 359.44814 * 20 18 16 25 25 C 1.52999 * 109.47361 * 59.99692 * 9 8 7 26 26 C 1.53001 * 109.46984 * 209.99987 * 5 4 3 27 27 H 4.38450 * 5.44500 * 179.97438 * 4 1 2 28 28 H 1.09006 * 109.46360 * 179.83828 * 3 2 1 29 29 H 1.08995 * 109.46807 * 59.84396 * 3 2 1 30 30 H 1.09000 * 109.46947 * 299.99675 * 7 5 4 31 31 H 1.08995 * 109.47101 * 59.99663 * 7 5 4 32 32 H 1.09009 * 109.47307 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.47722 * 59.99478 * 8 7 5 34 34 H 0.97003 * 120.00200 * 265.00303 * 11 9 8 35 35 H 1.07998 * 120.04805 * 0.04085 * 15 14 12 36 36 H 1.09002 * 109.47083 * 89.99935 * 17 16 15 37 37 H 1.09001 * 109.47390 * 209.99965 * 17 16 15 38 38 H 1.09004 * 109.47282 * 330.00464 * 17 16 15 39 39 H 0.96710 * 113.99889 * 270.27918 * 19 18 16 40 40 H 1.09000 * 109.47120 * 314.72766 * 21 20 18 41 41 H 0.96691 * 114.00079 * 59.99815 * 22 21 20 42 42 H 1.48501 * 109.99913 * 58.68075 * 23 21 20 43 43 H 1.48491 * 110.00401 * 179.97438 * 23 21 20 44 44 H 1.08001 * 120.04223 * 180.29883 * 24 20 18 45 45 H 1.09006 * 109.46913 * 60.00413 * 25 9 8 46 46 H 1.08993 * 109.47207 * 180.02562 * 25 9 8 47 47 H 1.08997 * 109.47095 * 60.00330 * 26 5 4 48 48 H 1.08993 * 109.47229 * 299.99579 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1227 -0.6694 1.1686 5 6 4.5472 -0.7244 1.2667 6 1 4.9799 -0.7424 0.2665 7 6 5.0545 0.5072 2.0197 8 6 6.5797 0.4486 2.1242 9 6 6.9910 -0.8164 2.8800 10 1 6.5587 -0.7986 3.8805 11 7 8.4515 -0.8722 2.9806 12 6 9.0833 -0.2253 3.9800 13 8 8.4413 0.4042 4.7983 14 6 10.5548 -0.2820 4.0817 15 6 11.2943 -1.0062 3.1432 16 6 12.6671 -1.0570 3.2419 17 6 13.4657 -1.8383 2.2305 18 6 13.3171 -0.3846 4.2697 19 8 14.6704 -0.4326 4.3604 20 6 12.5845 0.3323 5.2088 21 6 13.2941 1.0545 6.3251 22 8 13.9179 2.2323 5.8095 23 14 12.0622 1.5291 7.6396 24 6 11.2118 0.3881 5.1171 25 6 6.4837 -2.0480 2.1271 26 6 4.9579 -1.9894 2.0229 27 1 -1.0499 0.0000 0.0003 28 1 3.0088 1.0286 -0.0029 29 1 3.0095 -0.5154 -0.8886 30 1 4.7619 1.4084 1.4810 31 1 4.6218 0.5252 3.0199 32 1 6.9412 1.3263 2.6603 33 1 7.0121 0.4308 1.1237 34 1 8.9638 -1.3747 2.3278 35 1 10.7902 -1.5251 2.3414 36 1 13.7317 -1.1882 1.3970 37 1 14.3736 -2.2179 2.6993 38 1 12.8695 -2.6738 1.8637 39 1 15.0032 -1.1689 4.8918 40 1 14.0522 0.4010 6.7565 41 1 13.3016 2.8608 5.4094 42 1 11.3835 0.3157 8.1614 43 1 12.7495 2.2415 8.7464 44 1 10.6437 0.9493 5.8443 45 1 6.9161 -2.0658 1.1266 46 1 6.7764 -2.9492 2.6658 47 1 4.5966 -2.8668 1.4865 48 1 4.5253 -1.9714 3.0232 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14940684_13287732.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:48:58 Heat of formation + Delta-G solvation = -80.296816 kcal Electronic energy + Delta-G solvation = -29885.755076 eV Core-core repulsion = 25680.726430 eV Total energy + Delta-G solvation = -4205.028646 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.166 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.78277 -40.83859 -39.89856 -38.00700 -37.82857 -37.41920 -35.12484 -34.03865 -33.89274 -31.96672 -31.84614 -29.68998 -27.99567 -27.71897 -26.85631 -24.93326 -23.79663 -22.92650 -22.02860 -21.49778 -20.98924 -19.58260 -19.38996 -18.72594 -18.08983 -17.88688 -17.51927 -16.88557 -16.66065 -16.49193 -16.32326 -16.05316 -15.93706 -15.57710 -15.27369 -15.00545 -14.83029 -14.71135 -14.31287 -14.23630 -14.21121 -13.93475 -13.76212 -13.45852 -13.26922 -13.21488 -12.91324 -12.80692 -12.62348 -12.38324 -12.31881 -12.21670 -12.14291 -11.84133 -11.69291 -11.61307 -11.31957 -11.27323 -11.05363 -10.47424 -10.43618 -10.15748 -9.95908 -9.65266 -5.06310 -0.39078 0.07756 1.20135 1.49698 1.52875 1.64297 1.79674 1.83852 2.02674 2.58308 2.89472 3.10787 3.37166 3.52631 3.55620 3.57862 3.65274 3.73750 3.75677 4.00796 4.06859 4.11140 4.16509 4.18541 4.25966 4.31766 4.33575 4.38939 4.45088 4.46998 4.49067 4.60076 4.65244 4.72013 4.81807 4.82948 4.94073 5.02445 5.04299 5.06559 5.08835 5.13623 5.16656 5.19912 5.27512 5.30875 5.32639 5.47568 5.60183 6.21831 6.47350 6.57790 6.68619 6.70681 7.14686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.236 4.236 3 C 0.168 3.832 4 O -0.400 6.400 5 C 0.088 3.912 6 H 0.088 0.912 7 C -0.136 4.136 8 C -0.119 4.119 9 C 0.143 3.857 10 H 0.066 0.934 11 N -0.706 5.706 12 C 0.560 3.440 13 O -0.574 6.574 14 C -0.150 4.150 15 C -0.053 4.053 16 C -0.122 4.122 17 C -0.109 4.109 18 C 0.153 3.847 19 O -0.496 6.496 20 C -0.160 4.160 21 C -0.051 4.051 22 O -0.548 6.548 23 Si 0.741 3.259 24 C -0.057 4.057 25 C -0.112 4.112 26 C -0.112 4.112 27 H 0.247 0.753 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.416 0.584 35 H 0.165 0.835 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.409 0.591 40 H 0.113 0.887 41 H 0.392 0.608 42 H -0.290 1.290 43 H -0.288 1.288 44 H 0.140 0.860 45 H 0.097 0.903 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.768 -3.997 -7.126 8.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.236 4.236 3 C 0.093 3.907 4 O -0.320 6.320 5 C 0.032 3.968 6 H 0.106 0.894 7 C -0.175 4.175 8 C -0.158 4.158 9 C 0.039 3.961 10 H 0.084 0.916 11 N -0.358 5.358 12 C 0.348 3.652 13 O -0.454 6.454 14 C -0.153 4.153 15 C -0.072 4.072 16 C -0.122 4.122 17 C -0.166 4.166 18 C 0.107 3.893 19 O -0.309 6.309 20 C -0.161 4.161 21 C -0.162 4.162 22 O -0.355 6.355 23 Si 0.648 3.352 24 C -0.075 4.075 25 C -0.150 4.150 26 C -0.150 4.150 27 H 0.264 0.736 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.254 0.746 35 H 0.183 0.817 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.269 0.731 40 H 0.130 0.870 41 H 0.241 0.759 42 H -0.217 1.217 43 H -0.215 1.215 44 H 0.157 0.843 45 H 0.116 0.884 46 H 0.104 0.896 47 H 0.102 0.898 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.475 -3.542 -5.717 6.742 hybrid contribution 0.438 -0.582 0.213 0.759 sum 0.913 -4.123 -5.504 6.938 Atomic orbital electron populations 1.25850 0.96995 0.98941 0.97179 1.23278 0.95206 1.02162 1.02954 1.19318 0.84027 0.98395 0.89009 1.87966 1.22728 1.77950 1.43385 1.22321 0.79385 0.95124 1.00015 0.89372 1.21960 0.95413 0.98816 1.01291 1.21797 0.94978 0.97532 1.01487 1.21049 0.79077 0.96031 0.99990 0.91550 1.45825 1.07820 1.52496 1.29680 1.18345 0.87433 0.78549 0.80890 1.90795 1.68245 1.43736 1.42626 1.19833 0.92504 1.03844 0.99117 1.21382 0.92770 0.95807 0.97236 1.20452 0.94305 0.99392 0.98078 1.20745 0.99754 0.99409 0.96663 1.18501 0.83337 0.94409 0.93042 1.84776 1.16165 1.54861 1.75126 1.20634 0.93437 1.02904 0.99101 1.24810 1.03125 0.88602 0.99687 1.86507 1.38488 1.30273 1.80279 0.93796 0.80427 0.83652 0.77353 1.20999 0.92801 0.96788 0.96929 1.21723 0.94437 0.96730 1.02138 1.21520 0.95368 0.97089 1.01053 0.73636 0.89703 0.88939 0.90962 0.92632 0.92860 0.89478 0.74587 0.81719 0.90590 0.90953 0.89271 0.73123 0.86984 0.75861 1.21714 1.21482 0.84254 0.88448 0.89613 0.89842 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.44 19.25 74.32 1.43 0.99 16 2 C -0.24 -1.16 13.73 31.13 0.43 -0.74 16 3 C 0.17 0.07 6.22 70.18 0.44 0.51 16 4 O -0.40 -1.41 9.95 -148.98 -1.48 -2.89 16 5 C 0.09 -0.22 2.61 30.60 0.08 -0.14 16 6 H 0.09 -0.62 7.79 -2.39 -0.02 -0.64 16 7 C -0.14 0.15 5.54 30.59 0.17 0.32 16 8 C -0.12 0.29 5.49 30.59 0.17 0.46 16 9 C 0.14 -0.38 2.45 44.99 0.11 -0.27 16 10 H 0.07 0.23 7.57 -2.38 -0.02 0.21 16 11 N -0.71 2.80 5.03 -445.64 -2.24 0.56 16 12 C 0.56 1.73 7.73 86.72 0.67 2.40 16 13 O -0.57 -6.63 16.00 -3.97 -0.06 -6.69 16 14 C -0.15 -0.08 5.87 -20.08 -0.12 -0.20 16 15 C -0.05 0.26 9.18 22.50 0.21 0.46 16 16 C -0.12 0.37 5.89 -19.81 -0.12 0.26 16 17 C -0.11 0.76 9.78 71.24 0.70 1.46 16 18 C 0.15 0.05 6.66 22.63 0.15 0.20 16 19 O -0.50 0.14 11.85 -90.35 -1.07 -0.93 16 20 C -0.16 -0.23 5.27 -19.81 -0.10 -0.33 16 21 C -0.05 -0.08 2.37 71.24 0.17 0.09 16 22 O -0.55 -1.74 12.88 -148.98 -1.92 -3.66 16 23 Si 0.74 1.66 29.91 68.60 2.05 3.71 16 24 C -0.06 -0.13 8.20 22.50 0.18 0.06 16 25 C -0.11 0.86 5.39 30.61 0.17 1.02 16 26 C -0.11 0.42 5.58 30.61 0.17 0.59 16 27 H 0.25 -1.22 7.80 -4.42 -0.03 -1.25 16 28 H 0.09 -0.22 7.87 -2.38 -0.02 -0.24 16 29 H 0.09 -0.37 8.09 -2.39 -0.02 -0.39 16 30 H 0.07 -0.13 7.87 -2.39 -0.02 -0.15 16 31 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.05 0.14 8.14 -2.38 -0.02 0.12 16 33 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 34 H 0.42 -4.53 6.63 -92.71 -0.61 -5.15 16 35 H 0.17 -2.02 6.39 -2.91 -0.02 -2.04 16 36 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 37 H 0.07 -0.49 7.53 -2.39 -0.02 -0.51 16 38 H 0.09 -0.95 8.08 -2.39 -0.02 -0.97 16 39 H 0.41 -3.56 9.06 -74.05 -0.67 -4.23 16 40 H 0.11 0.12 7.83 -2.39 -0.02 0.10 16 41 H 0.39 -1.61 8.70 -74.06 -0.64 -2.25 16 42 H -0.29 -2.33 7.11 99.48 0.71 -1.62 16 43 H -0.29 -2.41 7.11 99.48 0.71 -1.70 16 44 H 0.14 0.35 4.70 -2.91 -0.01 0.33 16 45 H 0.10 -1.17 8.14 -2.38 -0.02 -1.19 16 46 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 47 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 48 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 Total: 0.00 -25.70 398.09 -0.71 -26.42 By element: Atomic # 1 Polarization: -22.76 SS G_CDS: -0.89 Total: -23.64 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 4.90 Total: 7.13 kcal Atomic # 7 Polarization: 2.80 SS G_CDS: -2.24 Total: 0.56 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -4.54 Total: -14.17 kcal Atomic # 14 Polarization: 1.66 SS G_CDS: 2.05 Total: 3.71 kcal Total: -25.70 -0.71 -26.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14940684_13287732.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.879 kcal (2) G-P(sol) polarization free energy of solvation -25.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds