Wall clock time and date at job start Sun Mar 7 2021 02:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 O 1.42901 * 109.47071 * 137.39626 * 3 2 1 5 5 C 1.42903 * 114.00157 * 179.97438 * 4 3 2 6 6 H 1.08992 * 109.47309 * 330.00452 * 5 4 3 7 7 C 1.53002 * 109.46797 * 90.00287 * 5 4 3 8 8 C 1.52997 * 109.46978 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.47164 * 299.99874 * 8 7 5 10 10 H 1.08998 * 109.46505 * 299.99708 * 9 8 7 11 11 N 1.46500 * 109.47249 * 180.02562 * 9 8 7 12 12 C 1.34770 * 120.00256 * 84.99846 * 11 9 8 13 13 O 1.21283 * 120.00026 * 359.97438 * 12 11 9 14 14 C 1.50701 * 119.99922 * 180.02562 * 12 11 9 15 15 C 1.50711 * 109.46839 * 179.97438 * 14 12 11 16 16 C 1.38274 * 119.93248 * 269.72003 * 15 14 12 17 17 C 1.38125 * 120.05970 * 179.76460 * 16 15 14 18 18 C 1.38828 * 119.93731 * 0.49674 * 17 16 15 19 19 N 1.40199 * 120.07031 * 179.74008 * 18 17 16 20 20 C 1.36562 * 125.66611 * 129.70820 * 19 18 17 21 21 C 1.34859 * 108.19605 * 179.83329 * 20 19 18 22 22 C 1.40938 * 107.46706 * 0.42669 * 21 20 19 23 23 C 1.34844 * 107.46744 * 359.73603 * 22 21 20 24 24 C 1.50704 * 125.89957 * 179.97438 * 23 22 21 25 25 O 1.42899 * 109.46959 * 149.99986 * 24 23 22 26 26 Si 1.86301 * 109.46966 * 30.00317 * 24 23 22 27 27 C 1.38828 * 119.86429 * 359.75952 * 18 17 16 28 28 C 1.38120 * 119.93986 * 0.02562 * 27 18 17 29 29 C 1.52997 * 109.47127 * 59.99836 * 9 8 7 30 30 C 1.52996 * 109.47126 * 209.99807 * 5 4 3 31 31 H 4.38440 * 5.44438 * 180.02562 * 4 1 2 32 32 H 1.08997 * 109.47785 * 17.39842 * 3 2 1 33 33 H 1.09006 * 109.47148 * 257.39130 * 3 2 1 34 34 H 1.09002 * 109.47097 * 299.99876 * 7 5 4 35 35 H 1.09001 * 109.47142 * 59.99841 * 7 5 4 36 36 H 1.09001 * 109.47375 * 59.99908 * 8 7 5 37 37 H 1.09000 * 109.47140 * 179.97438 * 8 7 5 38 38 H 0.97005 * 119.99374 * 264.99912 * 11 9 8 39 39 H 1.08991 * 109.47241 * 299.99575 * 14 12 11 40 40 H 1.09000 * 109.47273 * 60.00364 * 14 12 11 41 41 H 1.07997 * 119.97027 * 0.02796 * 16 15 14 42 42 H 1.08002 * 120.03439 * 180.25261 * 17 16 15 43 43 H 1.08003 * 125.90486 * 0.02562 * 20 19 18 44 44 H 1.08003 * 126.26363 * 180.16593 * 21 20 19 45 45 H 1.07996 * 126.26431 * 179.75062 * 22 21 20 46 46 H 1.08996 * 109.47636 * 270.00305 * 24 23 22 47 47 H 0.96705 * 114.00186 * 300.00039 * 25 24 23 48 48 H 1.48496 * 110.00297 * 180.02562 * 26 24 23 49 49 H 1.48506 * 109.99816 * 301.32008 * 26 24 23 50 50 H 1.08009 * 120.03039 * 179.97438 * 27 18 17 51 51 H 1.08000 * 119.97380 * 180.02562 * 28 27 18 52 52 H 1.09002 * 109.47153 * 180.02562 * 29 9 8 53 53 H 1.09001 * 109.46832 * 60.00321 * 29 9 8 54 54 H 1.09004 * 109.47368 * 60.00346 * 30 5 4 55 55 H 1.09001 * 109.47372 * 300.00501 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1218 0.9925 -0.9120 5 6 4.5463 1.0767 -0.9880 6 1 4.9787 0.7930 -0.0286 7 6 5.0557 0.1301 -2.0768 8 6 6.5809 0.2197 -2.1578 9 6 6.9903 1.6544 -2.4969 10 1 6.5582 1.9382 -3.4565 11 7 8.4507 1.7400 -2.5750 12 6 9.0837 1.4254 -3.7224 13 8 8.4445 1.0710 -4.6902 14 6 10.5861 1.5130 -3.8025 15 6 11.0398 1.1109 -5.1823 16 6 11.3387 -0.2119 -5.4522 17 6 11.7501 -0.5841 -6.7171 18 6 11.8733 0.3730 -7.7152 19 7 12.2959 -0.0009 -8.9986 20 6 11.6734 0.3273 -10.1690 21 6 12.3779 -0.2099 -11.1857 22 6 13.4694 -0.9027 -10.6245 23 6 13.3951 -0.7587 -9.2858 24 6 14.3584 -1.3349 -8.2803 25 8 14.4186 -0.4820 -7.1353 26 14 16.0514 -1.4661 -9.0466 27 6 11.5775 1.7011 -7.4397 28 6 11.1623 2.0667 -6.1741 29 6 6.4808 2.6010 -1.4082 30 6 4.9551 2.5114 -1.3275 31 1 -1.0502 -0.0001 0.0004 32 1 3.0098 -0.9798 -0.3073 33 1 3.0092 0.2252 1.0029 34 1 4.7644 -0.8921 -1.8350 35 1 4.6232 0.4138 -3.0363 36 1 7.0130 -0.0643 -1.1982 37 1 6.9438 -0.4550 -2.9331 38 1 8.9619 2.0232 -1.8008 39 1 10.9017 2.5363 -3.5998 40 1 11.0289 0.8433 -3.0653 41 1 11.2464 -0.9554 -4.6743 42 1 11.9796 -1.6180 -6.9285 43 1 10.7741 0.9178 -10.2641 44 1 12.1456 -0.1279 -12.2373 45 1 14.2267 -1.4488 -11.1673 46 1 14.0187 -2.3255 -7.9779 47 1 14.7140 0.4179 -7.3303 48 1 17.0106 -2.0336 -8.0653 49 1 15.9959 -2.3249 -10.2569 50 1 11.6728 2.4480 -8.2141 51 1 10.9317 3.0997 -5.9593 52 1 6.7721 3.6231 -1.6500 53 1 6.9130 2.3170 -0.4486 54 1 4.5922 3.1858 -0.5519 55 1 4.5226 2.7951 -2.2870 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14940684_13287746.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:49:02 Heat of formation + Delta-G solvation = 27.927568 kcal Electronic energy + Delta-G solvation = -35741.405279 eV Core-core repulsion = 31098.572216 eV Total energy + Delta-G solvation = -4642.833063 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 395.193 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -42.72889 -41.28852 -40.27535 -39.52939 -37.86703 -37.70753 -35.00189 -34.83733 -33.93404 -32.13593 -31.92596 -31.87182 -31.05104 -29.90232 -28.01750 -27.27000 -26.07867 -23.97193 -23.94814 -23.67448 -22.74613 -21.48246 -21.41452 -21.02176 -20.62905 -19.39166 -19.27429 -18.08468 -17.91308 -17.62834 -17.31959 -16.98750 -16.66195 -16.45517 -16.29504 -16.04884 -15.81411 -15.76054 -15.38784 -15.15345 -15.04239 -14.86188 -14.64771 -14.46436 -14.41402 -14.28972 -14.19649 -13.99760 -13.78814 -13.49340 -13.33640 -13.25821 -13.20847 -12.95242 -12.70331 -12.54833 -12.33146 -12.24221 -12.18312 -12.02143 -12.00223 -11.86271 -11.71445 -11.35329 -11.29305 -10.97287 -10.73887 -10.45824 -10.30335 -10.04337 -9.94006 -9.15703 -9.07257 -4.96139 0.00777 0.38644 1.06811 1.36332 1.46786 1.63419 1.66804 1.76795 1.86516 1.94405 2.08798 2.17337 2.74487 2.87999 3.36046 3.50795 3.59507 3.63941 3.67016 3.70567 3.77992 3.90663 3.98043 4.02639 4.10864 4.11897 4.15823 4.22785 4.24214 4.29583 4.34797 4.37195 4.40585 4.43086 4.45134 4.49273 4.52195 4.62399 4.63382 4.66202 4.80024 4.85457 4.91928 4.98831 5.00344 5.01809 5.09835 5.12819 5.17257 5.21484 5.23560 5.26593 5.29519 5.36673 5.53377 5.53805 5.81595 5.90692 6.16252 6.17818 6.48442 6.54939 6.59510 6.60157 7.31634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.237 4.237 3 C 0.168 3.832 4 O -0.401 6.401 5 C 0.090 3.910 6 H 0.088 0.912 7 C -0.137 4.137 8 C -0.118 4.118 9 C 0.144 3.856 10 H 0.059 0.941 11 N -0.714 5.714 12 C 0.512 3.488 13 O -0.581 6.581 14 C -0.097 4.097 15 C -0.066 4.066 16 C -0.099 4.099 17 C -0.096 4.096 18 C 0.113 3.887 19 N -0.393 5.393 20 C -0.019 4.019 21 C -0.199 4.199 22 C -0.205 4.205 23 C -0.018 4.018 24 C -0.051 4.051 25 O -0.545 6.545 26 Si 0.802 3.198 27 C -0.122 4.122 28 C -0.096 4.096 29 C -0.111 4.111 30 C -0.113 4.113 31 H 0.248 0.752 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.087 0.913 37 H 0.047 0.953 38 H 0.419 0.581 39 H 0.136 0.864 40 H 0.130 0.870 41 H 0.134 0.866 42 H 0.110 0.890 43 H 0.175 0.825 44 H 0.154 0.846 45 H 0.149 0.851 46 H 0.104 0.896 47 H 0.388 0.612 48 H -0.289 1.289 49 H -0.282 1.282 50 H 0.136 0.864 51 H 0.147 0.853 52 H 0.086 0.914 53 H 0.096 0.904 54 H 0.083 0.917 55 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.366 4.606 7.024 9.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.237 4.237 3 C 0.092 3.908 4 O -0.321 6.321 5 C 0.033 3.967 6 H 0.106 0.894 7 C -0.176 4.176 8 C -0.157 4.157 9 C 0.039 3.961 10 H 0.077 0.923 11 N -0.367 5.367 12 C 0.300 3.700 13 O -0.460 6.460 14 C -0.136 4.136 15 C -0.067 4.067 16 C -0.118 4.118 17 C -0.115 4.115 18 C 0.023 3.977 19 N -0.066 5.066 20 C -0.146 4.146 21 C -0.223 4.223 22 C -0.230 4.230 23 C -0.128 4.128 24 C -0.160 4.160 25 O -0.351 6.351 26 Si 0.705 3.295 27 C -0.141 4.141 28 C -0.115 4.115 29 C -0.149 4.149 30 C -0.151 4.151 31 H 0.265 0.735 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.066 0.934 38 H 0.257 0.743 39 H 0.154 0.846 40 H 0.148 0.852 41 H 0.152 0.848 42 H 0.128 0.872 43 H 0.192 0.808 44 H 0.171 0.829 45 H 0.166 0.834 46 H 0.122 0.878 47 H 0.237 0.763 48 H -0.216 1.216 49 H -0.209 1.209 50 H 0.154 0.846 51 H 0.164 0.836 52 H 0.105 0.895 53 H 0.115 0.885 54 H 0.102 0.898 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.147 3.508 6.609 8.117 hybrid contribution -0.911 -0.788 -0.089 1.208 sum 2.237 2.720 6.520 7.410 Atomic orbital electron populations 1.25869 0.96995 0.97849 0.98099 1.23262 0.95188 1.02693 1.02577 1.19316 0.84108 0.92938 0.94393 1.87969 1.22752 1.57534 1.63839 1.22310 0.79374 0.96186 0.98873 0.89362 1.21968 0.95651 1.00303 0.99659 1.21784 0.94806 0.96674 1.02438 1.20927 0.80187 0.95365 0.99593 0.92268 1.45940 1.07305 1.68782 1.14627 1.21039 0.90888 0.75764 0.82301 1.90756 1.69195 1.48019 1.38070 1.20766 0.90426 1.07198 0.95248 1.19575 0.98126 0.93185 0.95791 1.20987 0.98449 0.96281 0.96085 1.20835 0.99168 0.98250 0.93293 1.17767 1.02482 0.93850 0.83608 1.41545 1.20279 1.40475 1.04292 1.22307 1.01510 1.07091 0.83708 1.21176 0.97689 1.04073 0.99341 1.20954 1.02780 1.06930 0.92316 1.21230 0.92754 1.03047 0.95794 1.25011 1.07329 0.95166 0.88500 1.86488 1.90622 1.26625 1.31344 0.93038 0.72587 0.87827 0.76020 1.21120 1.01133 0.93618 0.98230 1.21086 0.98185 1.00482 0.91712 1.21707 0.94182 0.99941 0.99036 1.21534 0.95655 0.95056 1.02865 0.73540 0.89836 0.88864 0.91188 0.92947 0.89491 0.93417 0.74319 0.84601 0.85180 0.84789 0.87186 0.80784 0.82868 0.83388 0.87846 0.76349 1.21572 1.20877 0.84569 0.83566 0.89540 0.88539 0.89803 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.52 19.25 74.32 1.43 0.91 16 2 C -0.24 -1.31 13.73 31.12 0.43 -0.89 16 3 C 0.17 0.20 6.22 70.18 0.44 0.64 16 4 O -0.40 -1.79 9.95 -148.98 -1.48 -3.27 16 5 C 0.09 -0.14 2.61 30.59 0.08 -0.06 16 6 H 0.09 -0.54 7.79 -2.39 -0.02 -0.56 16 7 C -0.14 -0.03 5.54 30.59 0.17 0.14 16 8 C -0.12 0.17 5.49 30.60 0.17 0.34 16 9 C 0.14 -0.34 2.45 44.99 0.11 -0.23 16 10 H 0.06 0.27 7.58 -2.39 -0.02 0.25 16 11 N -0.71 3.99 5.08 -442.53 -2.25 1.74 16 12 C 0.51 0.08 7.79 87.66 0.68 0.76 16 13 O -0.58 -6.56 15.70 -3.04 -0.05 -6.61 16 14 C -0.10 0.60 5.83 29.11 0.17 0.77 16 15 C -0.07 -0.04 4.38 -19.84 -0.09 -0.12 16 16 C -0.10 -0.33 9.69 22.25 0.22 -0.11 16 17 C -0.10 -0.60 7.64 22.38 0.17 -0.43 16 18 C 0.11 0.64 4.90 38.08 0.19 0.82 16 19 N -0.39 -2.51 2.87 -333.41 -0.96 -3.46 16 20 C -0.02 -0.11 11.13 83.18 0.93 0.82 16 21 C -0.20 -1.08 10.86 22.15 0.24 -0.84 16 22 C -0.21 -1.14 9.43 22.15 0.21 -0.93 16 23 C -0.02 -0.10 6.02 41.04 0.25 0.15 16 24 C -0.05 -0.12 2.27 71.24 0.16 0.05 16 25 O -0.54 -0.94 9.85 -148.98 -1.47 -2.41 16 26 Si 0.80 -0.43 31.31 68.60 2.15 1.71 16 27 C -0.12 -0.33 9.67 22.38 0.22 -0.11 16 28 C -0.10 -0.06 9.69 22.25 0.22 0.15 16 29 C -0.11 0.81 5.39 30.61 0.17 0.97 16 30 C -0.11 0.34 5.58 30.61 0.17 0.51 16 31 H 0.25 -1.15 7.80 -4.41 -0.03 -1.18 16 32 H 0.08 -0.14 7.87 -2.39 -0.02 -0.16 16 33 H 0.09 -0.32 8.09 -2.38 -0.02 -0.33 16 34 H 0.07 -0.02 7.87 -2.39 -0.02 -0.04 16 35 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 37 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.42 -5.42 8.60 -92.70 -0.80 -6.22 16 39 H 0.14 -1.63 8.08 -2.39 -0.02 -1.65 16 40 H 0.13 -1.42 8.08 -2.39 -0.02 -1.44 16 41 H 0.13 0.06 8.06 -2.91 -0.02 0.03 16 42 H 0.11 0.85 7.65 -2.91 -0.02 0.83 16 43 H 0.17 0.41 8.06 -2.91 -0.02 0.39 16 44 H 0.15 0.30 8.06 -2.91 -0.02 0.27 16 45 H 0.15 0.49 6.67 -2.91 -0.02 0.47 16 46 H 0.10 0.37 7.96 -2.39 -0.02 0.35 16 47 H 0.39 -1.48 8.70 -74.05 -0.64 -2.12 16 48 H -0.29 -1.48 7.11 99.48 0.71 -0.77 16 49 H -0.28 -1.15 6.78 99.48 0.67 -0.47 16 50 H 0.14 0.04 8.06 -2.91 -0.02 0.02 16 51 H 0.15 -0.56 8.06 -2.91 -0.02 -0.58 16 52 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 53 H 0.10 -1.11 8.14 -2.39 -0.02 -1.13 16 54 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 55 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 Total: 0.00 -26.27 454.21 2.12 -24.15 By element: Atomic # 1 Polarization: -14.63 SS G_CDS: -0.54 Total: -15.17 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 6.71 Total: 3.30 kcal Atomic # 7 Polarization: 1.48 SS G_CDS: -3.20 Total: -1.72 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -3.00 Total: -12.28 kcal Atomic # 14 Polarization: -0.43 SS G_CDS: 2.15 Total: 1.71 kcal Total: -26.27 2.12 -24.15 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14940684_13287746.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.078 kcal (2) G-P(sol) polarization free energy of solvation -26.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds