Wall clock time and date at job start Sun Mar 7 2021 02:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42902 * 109.46857 * 271.38170 * 3 2 1 5 5 C 1.42899 * 113.99889 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47529 * 29.99518 * 5 4 3 7 7 C 1.53007 * 109.47353 * 149.99836 * 5 4 3 8 8 C 1.53003 * 109.47262 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.46822 * 299.99714 * 8 7 5 10 10 H 1.09000 * 109.47369 * 299.99948 * 9 8 7 11 11 N 1.46500 * 109.46947 * 180.02562 * 9 8 7 12 12 C 1.34780 * 120.00207 * 155.00412 * 11 9 8 13 13 O 1.21552 * 119.99723 * 359.97438 * 12 11 9 14 14 C 1.47837 * 120.00272 * 180.02562 * 12 11 9 15 15 C 1.39526 * 120.55841 * 359.97144 * 14 12 11 16 16 N 1.31692 * 120.56882 * 180.02562 * 15 14 12 17 17 C 1.31930 * 121.87650 * 359.97438 * 16 15 14 18 18 C 1.38355 * 121.07979 * 0.02562 * 17 16 15 19 19 C 1.50698 * 120.34538 * 180.02562 * 18 17 16 20 20 O 1.42902 * 109.47107 * 244.99967 * 19 18 17 21 21 Si 1.86298 * 109.47214 * 4.99905 * 19 18 17 22 22 C 1.38350 * 119.30332 * 359.97438 * 18 17 16 23 23 C 1.53004 * 109.47272 * 60.00313 * 9 8 7 24 24 C 1.53003 * 109.46941 * 299.99614 * 23 9 8 25 25 H 4.38442 * 5.44492 * 180.02562 * 4 1 2 26 26 H 1.08990 * 109.47472 * 151.38011 * 3 2 1 27 27 H 1.09000 * 109.47169 * 31.37688 * 3 2 1 28 28 H 1.08999 * 109.47063 * 59.99397 * 7 5 4 29 29 H 1.09004 * 109.46832 * 299.99931 * 7 5 4 30 30 H 1.09000 * 109.46983 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47106 * 59.99823 * 8 7 5 32 32 H 0.96999 * 120.00296 * 334.99974 * 11 9 8 33 33 H 1.08001 * 119.71730 * 0.04690 * 15 14 12 34 34 H 1.07993 * 119.45783 * 180.28100 * 17 16 15 35 35 H 1.09000 * 109.47176 * 125.00211 * 19 18 17 36 36 H 0.96703 * 113.99816 * 179.97438 * 20 19 18 37 37 H 1.48495 * 110.00162 * 299.99989 * 21 19 18 38 38 H 1.48498 * 109.99892 * 61.32056 * 21 19 18 39 39 H 1.08001 * 120.85460 * 180.02562 * 22 18 17 40 40 H 1.09000 * 109.47222 * 59.99545 * 23 9 8 41 41 H 1.08997 * 109.47411 * 180.02562 * 23 9 8 42 42 H 1.09000 * 109.47106 * 300.00002 * 24 23 9 43 43 H 1.09000 * 109.46983 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1222 -0.0316 1.3469 5 6 4.5468 -0.0331 1.4598 6 1 4.9789 0.5017 0.6140 7 6 4.9560 0.6571 2.7625 8 6 6.4813 0.6561 2.8830 9 6 6.9914 -0.7863 2.8881 10 1 6.5597 -1.3214 3.7340 11 7 8.4518 -0.7874 3.0041 12 6 9.0858 -1.8575 3.5231 13 8 8.4459 -2.8215 3.8954 14 6 10.5595 -1.8584 3.6407 15 6 11.3055 -0.7579 3.2175 16 7 12.6183 -0.7586 3.3217 17 6 13.2768 -1.7855 3.8243 18 6 12.6100 -2.9143 4.2662 19 6 13.3787 -4.0776 4.8380 20 8 13.2229 -5.2156 3.9878 21 14 15.1839 -3.6320 4.9545 22 6 11.2302 -2.9635 4.1786 23 6 6.5822 -1.4766 1.5854 24 6 5.0570 -1.4756 1.4649 25 1 -1.0500 -0.0002 0.0000 26 1 3.0089 0.9028 -0.4922 27 1 3.0097 -0.8766 -0.5351 28 1 4.5239 0.1223 3.6083 29 1 4.5929 1.6849 2.7587 30 1 6.7727 1.1482 3.8109 31 1 6.9129 1.1912 2.0372 32 1 8.9624 -0.0180 2.7074 33 1 10.8021 0.1022 2.8013 34 1 14.3535 -1.7425 3.8957 35 1 12.9974 -4.3117 5.8319 36 1 13.6923 -6.0032 4.2950 37 1 15.7157 -3.3107 3.6058 38 1 15.3626 -2.4696 5.8612 39 1 10.6843 -3.8321 4.5165 40 1 7.0139 -0.9415 0.7396 41 1 6.9453 -2.5044 1.5892 42 1 4.6253 -2.0107 2.3107 43 1 4.7655 -1.9669 0.5366 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14940684_13287814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:49:07 Heat of formation + Delta-G solvation = -19.634000 kcal Electronic energy + Delta-G solvation = -25518.610320 eV Core-core repulsion = 21725.006111 eV Total energy + Delta-G solvation = -3793.604209 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.07307 -40.90466 -39.89794 -37.95337 -37.86299 -35.27189 -34.08618 -33.98342 -33.17707 -31.90903 -29.92756 -27.79925 -27.34207 -25.86000 -23.99344 -23.76826 -23.03244 -21.65084 -21.11734 -19.44760 -19.05484 -18.57219 -18.24231 -18.11239 -17.88902 -16.97695 -16.75539 -16.39906 -16.25871 -16.08673 -15.38394 -15.35007 -15.10613 -14.89992 -14.75106 -14.47584 -14.33122 -14.25762 -13.86001 -13.80257 -13.50089 -13.26641 -12.72260 -12.63346 -12.40522 -12.20016 -12.18903 -11.89185 -11.72952 -11.53082 -11.35344 -11.28354 -11.19650 -10.83911 -10.61589 -10.46203 -10.27560 -10.16046 -4.97842 -0.73860 -0.15448 1.21628 1.47024 1.53427 1.63766 1.77520 1.84672 1.91326 2.47751 2.85440 2.93073 3.18029 3.39725 3.50506 3.55218 3.56831 3.61179 3.68983 3.71572 3.96706 4.00750 4.05322 4.13485 4.14590 4.21423 4.28257 4.34543 4.41748 4.42603 4.45003 4.56775 4.70325 4.75868 4.79436 4.90062 5.00265 5.00767 5.08508 5.11407 5.15213 5.19542 5.25107 5.38995 6.18133 6.29959 6.46703 6.55649 6.83769 6.97198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.237 4.237 3 C 0.167 3.833 4 O -0.399 6.399 5 C 0.088 3.912 6 H 0.088 0.912 7 C -0.112 4.112 8 C -0.113 4.113 9 C 0.143 3.857 10 H 0.069 0.931 11 N -0.703 5.703 12 C 0.567 3.433 13 O -0.569 6.569 14 C -0.192 4.192 15 C 0.145 3.855 16 N -0.496 5.496 17 C 0.109 3.891 18 C -0.141 4.141 19 C -0.081 4.081 20 O -0.565 6.565 21 Si 0.781 3.219 22 C 0.001 3.999 23 C -0.121 4.121 24 C -0.136 4.136 25 H 0.248 0.752 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.417 0.583 33 H 0.199 0.801 34 H 0.158 0.842 35 H 0.100 0.900 36 H 0.407 0.593 37 H -0.288 1.288 38 H -0.280 1.280 39 H 0.147 0.853 40 H 0.087 0.913 41 H 0.050 0.950 42 H 0.056 0.944 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.274 1.603 -0.332 3.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.237 4.237 3 C 0.092 3.908 4 O -0.320 6.320 5 C 0.032 3.968 6 H 0.106 0.894 7 C -0.150 4.150 8 C -0.151 4.151 9 C 0.039 3.961 10 H 0.087 0.913 11 N -0.355 5.355 12 C 0.354 3.646 13 O -0.449 6.449 14 C -0.197 4.197 15 C -0.014 4.014 16 N -0.204 5.204 17 C -0.046 4.046 18 C -0.143 4.143 19 C -0.191 4.191 20 O -0.375 6.375 21 Si 0.685 3.315 22 C -0.026 4.026 23 C -0.159 4.159 24 C -0.175 4.175 25 H 0.264 0.736 26 H 0.111 0.889 27 H 0.102 0.898 28 H 0.079 0.921 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.255 0.745 33 H 0.216 0.784 34 H 0.175 0.825 35 H 0.117 0.883 36 H 0.259 0.741 37 H -0.215 1.215 38 H -0.207 1.207 39 H 0.164 0.836 40 H 0.106 0.894 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.410 2.692 -0.661 4.395 hybrid contribution -0.992 -0.599 -0.033 1.159 sum 2.418 2.093 -0.694 3.273 Atomic orbital electron populations 1.25861 0.96990 0.99698 0.96285 1.23260 0.95182 1.01848 1.03389 1.19315 0.84093 1.02826 0.84533 1.87968 1.22648 1.95283 1.26057 1.22317 0.79441 0.95427 0.99664 0.89377 1.21511 0.95224 1.01771 0.96480 1.21726 0.94561 0.93853 1.04942 1.21097 0.78603 0.98152 0.98231 0.91309 1.45824 1.08126 1.18714 1.62818 1.18082 0.86613 0.82909 0.76999 1.90802 1.68038 1.35544 1.50543 1.21094 0.94390 0.97842 1.06422 1.23527 0.89008 0.96778 0.92075 1.67739 1.10230 1.27734 1.14654 1.22908 1.00309 0.89167 0.92247 1.20695 0.94492 0.97128 1.02031 1.24852 1.11458 0.86877 0.95901 1.86440 1.77390 1.22457 1.51259 0.93845 0.74707 0.84569 0.78401 1.21714 0.93407 0.96956 0.90497 1.21808 0.95233 1.00861 0.98019 1.21959 0.95170 0.97586 1.02735 0.73571 0.88935 0.89764 0.92076 0.89681 0.89405 0.88406 0.74483 0.78396 0.82540 0.88267 0.74082 1.21523 1.20720 0.83573 0.89436 0.93151 0.92532 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.51 19.25 74.32 1.43 0.92 16 2 C -0.24 -1.29 13.73 31.12 0.43 -0.86 16 3 C 0.17 0.18 6.22 70.18 0.44 0.62 16 4 O -0.40 -1.66 9.95 -148.98 -1.48 -3.14 16 5 C 0.09 -0.16 2.61 30.60 0.08 -0.08 16 6 H 0.09 -0.54 7.79 -2.39 -0.02 -0.56 16 7 C -0.11 0.35 5.57 30.60 0.17 0.52 16 8 C -0.11 0.77 5.39 30.59 0.16 0.93 16 9 C 0.14 -0.22 2.45 44.99 0.11 -0.11 16 10 H 0.07 0.29 7.58 -2.39 -0.02 0.27 16 11 N -0.70 1.72 5.03 -445.41 -2.24 -0.52 16 12 C 0.57 2.91 7.75 86.78 0.67 3.58 16 13 O -0.57 -7.77 16.08 -3.88 -0.06 -7.84 16 14 C -0.19 -0.75 5.89 -19.99 -0.12 -0.86 16 15 C 0.14 0.09 10.71 85.02 0.91 1.00 16 16 N -0.50 -2.62 10.35 -194.75 -2.01 -4.64 16 17 C 0.11 0.57 9.84 84.71 0.83 1.40 16 18 C -0.14 -0.60 5.38 -19.81 -0.11 -0.70 16 19 C -0.08 0.14 2.81 71.24 0.20 0.34 16 20 O -0.56 0.47 12.82 -148.98 -1.91 -1.44 16 21 Si 0.78 -3.31 29.87 68.60 2.05 -1.26 16 22 C 0.00 0.00 9.38 22.73 0.21 0.22 16 23 C -0.12 0.13 5.50 30.60 0.17 0.29 16 24 C -0.14 0.02 5.54 30.60 0.17 0.19 16 25 H 0.25 -1.14 7.80 -4.42 -0.03 -1.18 16 26 H 0.09 -0.31 8.08 -2.39 -0.02 -0.33 16 27 H 0.08 -0.15 7.87 -2.39 -0.02 -0.17 16 28 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.08 -0.34 8.14 -2.38 -0.02 -0.36 16 30 H 0.09 -0.68 8.14 -2.39 -0.02 -0.69 16 31 H 0.10 -1.08 8.14 -2.39 -0.02 -1.10 16 32 H 0.42 -3.93 6.67 -92.71 -0.62 -4.55 16 33 H 0.20 -1.64 6.42 -2.91 -0.02 -1.65 16 34 H 0.16 0.53 4.87 -2.91 -0.01 0.51 16 35 H 0.10 -0.55 7.96 -2.39 -0.02 -0.57 16 36 H 0.41 -4.72 8.74 -74.06 -0.65 -5.37 16 37 H -0.29 -0.75 7.05 99.48 0.70 -0.05 16 38 H -0.28 -0.19 7.11 99.48 0.71 0.51 16 39 H 0.15 0.99 7.74 -2.91 -0.02 0.96 16 40 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 41 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 42 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 43 H 0.07 -0.05 7.87 -2.39 -0.02 -0.07 16 Total: 0.00 -25.78 362.67 -0.09 -25.88 By element: Atomic # 1 Polarization: -14.24 SS G_CDS: -0.20 Total: -14.44 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 5.76 Total: 7.39 kcal Atomic # 7 Polarization: -0.90 SS G_CDS: -4.26 Total: -5.15 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -3.45 Total: -12.42 kcal Atomic # 14 Polarization: -3.31 SS G_CDS: 2.05 Total: -1.26 kcal Total: -25.78 -0.09 -25.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14940684_13287814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.242 kcal (2) G-P(sol) polarization free energy of solvation -25.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds