Wall clock time and date at job start Sun Mar 7 2021 02:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 O 1.42904 * 109.47112 * 308.07835 * 3 2 1 5 5 C 1.42905 * 113.99853 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.46768 * 329.99711 * 5 4 3 7 7 C 1.53001 * 109.46931 * 89.99749 * 5 4 3 8 8 C 1.53006 * 109.46692 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46816 * 299.99630 * 8 7 5 10 10 H 1.08998 * 109.47363 * 300.00626 * 9 8 7 11 11 N 1.46500 * 109.46819 * 179.97438 * 9 8 7 12 12 C 1.34774 * 119.99848 * 85.00239 * 11 9 8 13 13 O 1.21601 * 119.99935 * 359.97438 * 12 11 9 14 14 C 1.47558 * 120.00201 * 179.97438 * 12 11 9 15 15 C 1.39833 * 120.00335 * 180.02562 * 14 12 11 16 16 C 1.36557 * 120.00061 * 180.02562 * 15 14 12 17 17 C 1.39823 * 119.99899 * 0.02562 * 16 15 14 18 18 C 1.47566 * 119.99912 * 179.97438 * 17 16 15 19 19 C 1.34978 * 125.27871 * 180.02562 * 18 17 16 20 20 C 1.37801 * 114.70400 * 179.97438 * 19 18 17 21 21 C 1.33742 * 115.07808 * 0.02562 * 20 19 18 22 22 C 1.50701 * 125.11686 * 180.02562 * 21 20 19 23 23 O 1.42896 * 109.47047 * 64.99967 * 22 21 20 24 24 Si 1.86302 * 109.47059 * 184.99807 * 22 21 20 25 25 S 1.75863 * 109.76590 * 359.97438 * 21 20 19 26 26 C 1.39819 * 120.00693 * 0.23233 * 17 16 15 27 27 C 1.36572 * 119.99655 * 359.48181 * 26 17 16 28 28 C 1.53008 * 109.46923 * 60.00262 * 9 8 7 29 29 C 1.52993 * 109.46659 * 209.99844 * 5 4 3 30 30 H 4.38451 * 5.44530 * 179.97438 * 4 1 2 31 31 H 1.08999 * 109.47201 * 188.07553 * 3 2 1 32 32 H 1.09000 * 109.46901 * 68.07125 * 3 2 1 33 33 H 1.09000 * 109.46916 * 299.99826 * 7 5 4 34 34 H 1.08991 * 109.47009 * 60.00121 * 7 5 4 35 35 H 1.09002 * 109.46975 * 180.02562 * 8 7 5 36 36 H 1.08995 * 109.46942 * 60.00001 * 8 7 5 37 37 H 0.97004 * 120.00067 * 264.99932 * 11 9 8 38 38 H 1.08000 * 119.99793 * 359.97438 * 15 14 12 39 39 H 1.08004 * 120.00324 * 179.97438 * 16 15 14 40 40 H 1.08002 * 122.64931 * 359.97438 * 19 18 17 41 41 H 1.07998 * 122.46035 * 180.02562 * 20 19 18 42 42 H 1.08998 * 109.47222 * 304.99726 * 22 21 20 43 43 H 0.96701 * 114.00090 * 60.00343 * 23 22 21 44 44 H 1.48500 * 110.00292 * 179.97438 * 24 22 21 45 45 H 1.48505 * 110.00081 * 301.32093 * 24 22 21 46 46 H 1.07993 * 120.00300 * 179.74786 * 26 17 16 47 47 H 1.07995 * 120.00135 * 180.25360 * 27 26 17 48 48 H 1.08998 * 109.46804 * 60.00022 * 28 9 8 49 49 H 1.09000 * 109.46651 * 179.97438 * 28 9 8 50 50 H 1.08997 * 109.47883 * 59.99991 * 29 5 4 51 51 H 1.09002 * 109.47107 * 299.99661 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1227 -0.8301 1.0606 5 6 4.5473 -0.8985 1.1497 6 1 4.9798 -0.7731 0.1572 7 6 5.0546 0.2124 2.0713 8 6 6.5799 0.1395 2.1662 9 6 6.9911 -1.2209 2.7331 10 1 6.5588 -1.3466 3.7258 11 7 8.4516 -1.2910 2.8234 12 6 9.0845 -0.7940 3.9045 13 8 8.4433 -0.2869 4.8048 14 6 10.5556 -0.8650 3.9958 15 6 11.2122 -0.3498 5.1177 16 6 12.5736 -0.4152 5.2019 17 6 13.3110 -0.9968 4.1660 18 6 14.7822 -1.0668 4.2567 19 6 15.5962 -1.6024 3.3227 20 6 16.9383 -1.5519 3.6311 21 6 17.2290 -0.9820 4.8056 22 6 18.6176 -0.8080 5.3646 23 8 19.3588 0.0842 4.5300 24 14 18.5103 -0.1032 7.0859 25 16 15.7470 -0.4650 5.5988 26 6 12.6550 -1.5071 3.0417 27 6 11.2930 -1.4470 2.9601 28 6 6.4837 -2.3319 1.8115 29 6 4.9579 -2.2589 1.7168 30 1 -1.0499 0.0000 0.0003 31 1 3.0089 1.0183 0.1444 32 1 3.0094 -0.3830 -0.9533 33 1 4.7620 1.1816 1.6672 34 1 4.6220 0.0870 3.0638 35 1 6.9413 0.9307 2.8231 36 1 7.0121 0.2652 1.1735 37 1 8.9632 -1.6952 2.1051 38 1 10.6427 0.1005 5.9173 39 1 13.0809 -0.0169 6.0683 40 1 15.2250 -2.0364 2.4060 41 1 17.6995 -1.9436 2.9727 42 1 19.1195 -1.7750 5.3986 43 1 18.9694 0.9661 4.4535 44 1 19.8732 0.0727 7.6487 45 1 17.7998 1.2006 7.0575 46 1 13.2248 -1.9526 2.2398 47 1 10.7859 -1.8449 2.0935 48 1 6.9160 -2.2062 0.8188 49 1 6.7770 -3.3010 2.2151 50 1 4.5965 -3.0504 1.0603 51 1 4.5253 -2.3843 2.7094 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14940684_13308390.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:49:13 Heat of formation + Delta-G solvation = 3.900780 kcal Electronic energy + Delta-G solvation = -32355.695346 eV Core-core repulsion = 27893.710040 eV Total energy + Delta-G solvation = -4461.985307 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 398.138 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.55837 -40.44262 -39.74032 -39.04602 -37.88743 -37.45931 -35.17587 -34.05341 -33.40436 -32.26858 -31.87921 -30.70927 -29.65778 -27.80909 -27.03010 -24.81541 -24.05598 -23.76848 -23.55256 -22.83684 -21.57386 -21.14285 -20.28125 -19.47162 -19.13848 -18.58344 -17.91189 -17.75354 -17.31319 -16.80112 -16.61964 -16.38943 -16.26301 -16.15402 -16.09225 -15.92016 -15.53158 -15.09529 -15.03327 -14.88737 -14.51532 -14.44502 -14.35223 -14.23968 -13.79986 -13.77316 -13.62398 -13.48211 -13.30463 -13.22196 -13.08155 -12.65576 -12.54956 -12.41949 -12.35855 -12.17394 -12.08178 -11.85498 -11.70598 -11.49729 -11.33853 -11.29284 -11.07769 -10.82663 -10.67972 -10.44637 -10.17928 -10.12268 -9.55698 -9.02680 -5.07399 -0.88077 0.26274 0.35028 0.39810 0.77134 1.21044 1.48477 1.52056 1.57128 1.78626 1.84765 1.97402 2.03756 2.84105 2.88124 3.31598 3.42154 3.52574 3.58244 3.66276 3.71066 3.74878 3.75512 3.85447 4.02108 4.08687 4.15643 4.21428 4.24067 4.30145 4.32690 4.37804 4.42974 4.44300 4.46759 4.52125 4.57186 4.61869 4.63369 4.80450 4.91852 4.93310 5.01405 5.02786 5.03068 5.10872 5.11710 5.14133 5.22702 5.25246 5.28818 5.30381 5.33712 5.46219 5.49419 5.74505 6.19930 6.37437 6.47343 6.56785 7.14534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.237 4.237 3 C 0.167 3.833 4 O -0.400 6.400 5 C 0.089 3.911 6 H 0.089 0.911 7 C -0.137 4.137 8 C -0.119 4.119 9 C 0.143 3.857 10 H 0.064 0.936 11 N -0.706 5.706 12 C 0.557 3.443 13 O -0.582 6.582 14 C -0.151 4.151 15 C -0.065 4.065 16 C -0.129 4.129 17 C 0.006 3.994 18 C -0.159 4.159 19 C -0.115 4.115 20 C -0.108 4.108 21 C -0.218 4.218 22 C -0.033 4.033 23 O -0.539 6.539 24 Si 0.706 3.294 25 S 0.117 5.883 26 C -0.108 4.108 27 C -0.066 4.066 28 C -0.112 4.112 29 C -0.112 4.112 30 H 0.248 0.752 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.088 0.912 37 H 0.417 0.583 38 H 0.126 0.874 39 H 0.132 0.868 40 H 0.168 0.832 41 H 0.156 0.844 42 H 0.140 0.860 43 H 0.387 0.613 44 H -0.272 1.272 45 H -0.266 1.266 46 H 0.162 0.838 47 H 0.165 0.835 48 H 0.098 0.902 49 H 0.086 0.914 50 H 0.085 0.915 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.948 -3.796 -6.287 7.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.237 4.237 3 C 0.092 3.908 4 O -0.320 6.320 5 C 0.032 3.968 6 H 0.107 0.893 7 C -0.175 4.175 8 C -0.158 4.158 9 C 0.038 3.962 10 H 0.082 0.918 11 N -0.358 5.358 12 C 0.345 3.655 13 O -0.463 6.463 14 C -0.154 4.154 15 C -0.084 4.084 16 C -0.148 4.148 17 C 0.004 3.996 18 C -0.276 4.276 19 C -0.146 4.146 20 C -0.139 4.139 21 C -0.335 4.335 22 C -0.145 4.145 23 O -0.347 6.347 24 Si 0.609 3.391 25 S 0.384 5.616 26 C -0.128 4.128 27 C -0.085 4.085 28 C -0.150 4.150 29 C -0.150 4.150 30 H 0.264 0.736 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.255 0.745 38 H 0.144 0.856 39 H 0.150 0.850 40 H 0.185 0.815 41 H 0.173 0.827 42 H 0.158 0.842 43 H 0.237 0.763 44 H -0.198 1.198 45 H -0.191 1.191 46 H 0.179 0.821 47 H 0.183 0.817 48 H 0.117 0.883 49 H 0.105 0.895 50 H 0.103 0.897 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.678 -2.670 -3.666 4.836 hybrid contribution 0.398 0.537 -1.913 2.026 sum 2.076 -2.133 -5.578 6.323 Atomic orbital electron populations 1.25863 0.96997 0.98439 0.97582 1.23272 0.95199 1.02411 1.02795 1.19321 0.84067 0.95937 0.91444 1.87971 1.22696 1.68712 1.52657 1.22313 0.79401 0.95466 0.99600 0.89284 1.21963 0.95323 0.99615 1.00599 1.21798 0.95081 0.96815 1.02110 1.21044 0.79198 0.95871 1.00068 0.91808 1.45826 1.07766 1.60730 1.21434 1.18502 0.87834 0.77296 0.81831 1.90792 1.68572 1.46441 1.40459 1.20033 0.92210 1.05316 0.97852 1.20933 0.94267 0.96153 0.97074 1.21015 0.93724 1.00876 0.99179 1.18469 0.89276 0.96862 0.95008 1.23169 0.95899 1.08703 0.99819 1.20649 0.92193 1.00880 1.00829 1.20213 0.96899 1.00230 0.96533 1.25076 0.98733 1.08884 1.00827 1.24438 0.87634 0.99290 1.03171 1.86602 1.52358 1.26895 1.68892 0.94431 0.82810 0.84480 0.77408 1.84302 0.96979 1.58757 1.21529 1.21210 0.94434 0.99540 0.97572 1.21280 0.94016 0.95616 0.97557 1.21724 0.94454 0.98090 1.00695 1.21521 0.95344 0.96046 1.02114 0.73574 0.89770 0.88864 0.90988 0.92732 0.93302 0.89376 0.74460 0.85560 0.85014 0.81482 0.82687 0.84237 0.76328 1.19771 1.19141 0.82052 0.81728 0.88349 0.89506 0.89656 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.49 19.25 74.32 1.43 0.94 16 2 C -0.24 -1.26 13.73 31.12 0.43 -0.83 16 3 C 0.17 0.15 6.22 70.18 0.44 0.59 16 4 O -0.40 -1.65 9.95 -148.98 -1.48 -3.13 16 5 C 0.09 -0.16 2.61 30.59 0.08 -0.08 16 6 H 0.09 -0.58 7.79 -2.39 -0.02 -0.60 16 7 C -0.14 0.00 5.54 30.60 0.17 0.17 16 8 C -0.12 0.12 5.49 30.60 0.17 0.29 16 9 C 0.14 -0.19 2.45 45.00 0.11 -0.08 16 10 H 0.06 0.33 7.58 -2.39 -0.02 0.31 16 11 N -0.71 1.88 5.03 -445.65 -2.24 -0.36 16 12 C 0.56 2.76 7.73 86.70 0.67 3.43 16 13 O -0.58 -8.37 15.99 -4.03 -0.06 -8.44 16 14 C -0.15 -0.26 5.88 -20.05 -0.12 -0.38 16 15 C -0.07 -0.26 9.53 22.26 0.21 -0.05 16 16 C -0.13 -0.23 9.54 22.26 0.21 -0.02 16 17 C 0.01 0.00 5.88 -20.05 -0.12 -0.12 16 18 C -0.16 0.09 6.37 23.98 0.15 0.24 16 19 C -0.12 0.36 9.64 21.42 0.21 0.56 16 20 C -0.11 0.23 10.03 21.14 0.21 0.45 16 21 C -0.22 0.27 5.71 24.66 0.14 0.41 16 22 C -0.03 0.06 2.96 71.24 0.21 0.27 16 23 O -0.54 -0.44 12.88 -148.98 -1.92 -2.35 16 24 Si 0.71 -0.95 30.97 68.60 2.12 1.18 16 25 S 0.12 -0.04 19.48 -56.49 -1.10 -1.14 16 26 C -0.11 0.51 9.48 22.26 0.21 0.72 16 27 C -0.07 0.34 9.48 22.27 0.21 0.55 16 28 C -0.11 0.77 5.39 30.61 0.17 0.94 16 29 C -0.11 0.35 5.58 30.61 0.17 0.52 16 30 H 0.25 -1.17 7.80 -4.42 -0.03 -1.21 16 31 H 0.08 -0.17 7.87 -2.39 -0.02 -0.19 16 32 H 0.09 -0.34 8.09 -2.39 -0.02 -0.36 16 33 H 0.07 -0.05 7.87 -2.39 -0.02 -0.07 16 34 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.05 0.22 8.14 -2.39 -0.02 0.21 16 36 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 37 H 0.42 -4.20 6.61 -92.71 -0.61 -4.81 16 38 H 0.13 0.76 7.64 -2.91 -0.02 0.74 16 39 H 0.13 0.04 7.26 -2.91 -0.02 0.02 16 40 H 0.17 -1.39 6.88 -2.91 -0.02 -1.41 16 41 H 0.16 -0.66 8.06 -2.91 -0.02 -0.69 16 42 H 0.14 -0.61 7.96 -2.39 -0.02 -0.63 16 43 H 0.39 -1.65 8.70 -74.06 -0.64 -2.29 16 44 H -0.27 -1.32 7.11 99.48 0.71 -0.61 16 45 H -0.27 -0.75 7.11 99.48 0.71 -0.04 16 46 H 0.16 -1.70 6.74 -2.91 -0.02 -1.72 16 47 H 0.17 -2.12 6.38 -2.91 -0.02 -2.14 16 48 H 0.10 -1.13 8.14 -2.39 -0.02 -1.15 16 49 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 50 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 51 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 Total: 0.00 -24.09 437.20 0.43 -23.66 By element: Atomic # 1 Polarization: -17.68 SS G_CDS: -0.25 Total: -17.93 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 5.36 Total: 8.52 kcal Atomic # 7 Polarization: 1.88 SS G_CDS: -2.24 Total: -0.36 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -3.47 Total: -13.93 kcal Atomic # 14 Polarization: -0.95 SS G_CDS: 2.12 Total: 1.18 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -1.10 Total: -1.14 kcal Total: -24.09 0.43 -23.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14940684_13308390.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.562 kcal (2) G-P(sol) polarization free energy of solvation -24.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds