Wall clock time and date at job start Sun Mar 7 2021 02:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42896 * 109.46934 * 130.25856 * 3 2 1 5 5 C 1.42898 * 113.99967 * 179.97438 * 4 3 2 6 6 H 1.08995 * 109.47367 * 330.00153 * 5 4 3 7 7 C 1.53009 * 109.46942 * 90.00522 * 5 4 3 8 8 C 1.52999 * 109.47040 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47197 * 299.99589 * 8 7 5 10 10 H 1.08995 * 109.46964 * 300.00228 * 9 8 7 11 11 N 1.46495 * 109.47035 * 179.97438 * 9 8 7 12 12 C 1.34777 * 119.99777 * 85.00306 * 11 9 8 13 13 O 1.21587 * 120.00261 * 359.97438 * 12 11 9 14 14 C 1.47538 * 120.00153 * 179.97438 * 12 11 9 15 15 C 1.40131 * 120.19167 * 179.97438 * 14 12 11 16 16 O 1.35653 * 120.15219 * 0.02562 * 15 14 12 17 17 C 1.38718 * 119.69809 * 179.97438 * 15 14 12 18 18 C 1.38055 * 120.08443 * 0.02706 * 17 15 14 19 19 C 1.50695 * 119.80435 * 179.97438 * 18 17 15 20 20 O 1.42904 * 109.47304 * 64.99866 * 19 18 17 21 21 Si 1.86300 * 109.47085 * 185.00004 * 19 18 17 22 22 C 1.38554 * 120.38800 * 359.97430 * 18 17 15 23 23 C 1.37781 * 120.30032 * 359.74653 * 22 18 17 24 24 C 1.53009 * 109.46790 * 60.00258 * 9 8 7 25 25 C 1.52999 * 109.47279 * 210.00101 * 5 4 3 26 26 H 4.38443 * 5.44391 * 180.02562 * 4 1 2 27 27 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 28 28 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 29 29 H 1.08996 * 109.46645 * 299.99712 * 7 5 4 30 30 H 1.08999 * 109.46819 * 60.00114 * 7 5 4 31 31 H 1.08997 * 109.46841 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.47165 * 59.99855 * 8 7 5 33 33 H 0.97001 * 120.00534 * 264.99656 * 11 9 8 34 34 H 0.96702 * 114.00094 * 90.00037 * 16 15 14 35 35 H 1.08000 * 119.95260 * 180.02562 * 17 15 14 36 36 H 1.09003 * 109.46774 * 304.99836 * 19 18 17 37 37 H 0.96696 * 113.99704 * 59.99514 * 20 19 18 38 38 H 1.48500 * 109.99941 * 179.97438 * 21 19 18 39 39 H 1.48500 * 110.00092 * 301.31757 * 21 19 18 40 40 H 1.07995 * 119.84181 * 180.02562 * 22 18 17 41 41 H 1.07998 * 120.04744 * 180.28038 * 23 22 18 42 42 H 1.08996 * 109.46645 * 180.02562 * 24 9 8 43 43 H 1.08991 * 109.46950 * 60.00070 * 24 9 8 44 44 H 1.09003 * 109.47280 * 300.00266 * 25 5 4 45 45 H 1.08997 * 109.46986 * 60.00452 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1219 0.8715 -1.0281 5 6 4.5464 0.9455 -1.1139 6 1 4.9787 0.7833 -0.1266 7 6 5.0558 -0.1290 -2.0767 8 6 6.5810 -0.0502 -2.1680 9 6 6.9904 1.3313 -2.6828 10 1 6.5584 1.4937 -3.6702 11 7 8.4509 1.4069 -2.7697 12 6 9.0850 0.9521 -3.8685 13 8 8.4450 0.4786 -4.7876 14 6 10.5558 1.0288 -3.9564 15 6 11.2192 0.5566 -5.0968 16 8 10.5120 0.0270 -6.1262 17 6 12.6023 0.6342 -5.1687 18 6 13.3207 1.1738 -4.1205 19 6 14.8231 1.2545 -4.2051 20 8 15.1937 2.1472 -5.2577 21 14 15.5032 1.8836 -2.5888 22 6 12.6683 1.6417 -2.9913 23 6 11.2947 1.5777 -2.9054 24 6 6.4810 2.4058 -1.7200 25 6 4.9552 2.3270 -1.6290 26 1 -1.0502 -0.0001 0.0004 27 1 3.0092 0.3479 0.9672 28 1 3.0098 -1.0104 -0.1831 29 1 4.7646 -1.1131 -1.7097 30 1 4.6234 0.0334 -3.0640 31 1 6.9440 -0.8159 -2.8536 32 1 7.0131 -0.2127 -1.1806 33 1 8.9615 1.7844 -2.0364 34 1 10.2436 0.6739 -6.7929 35 1 13.1178 0.2719 -6.0459 36 1 15.2291 0.2637 -4.4092 37 1 14.8655 3.0494 -5.1419 38 1 16.9841 1.9672 -2.6591 39 1 14.9325 3.2202 -2.2835 40 1 13.2389 2.0626 -2.1767 41 1 10.7901 1.9477 -2.0251 42 1 6.7722 3.3899 -2.0869 43 1 6.9130 2.2432 -0.7327 44 1 4.5228 2.4893 -2.6163 45 1 4.5923 3.0925 -0.9431 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14940684_13422076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:49:18 Heat of formation + Delta-G solvation = -72.434982 kcal Electronic energy + Delta-G solvation = -27757.928472 eV Core-core repulsion = 23708.778360 eV Total energy + Delta-G solvation = -4049.150112 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.150 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.73894 -40.62533 -39.69736 -38.55620 -37.75818 -37.22316 -35.06890 -34.00259 -32.76421 -31.87225 -31.09937 -29.86291 -27.88726 -27.15719 -24.06473 -23.90043 -23.71029 -22.72826 -21.52201 -21.14879 -19.56682 -19.29094 -18.66118 -18.29293 -17.90051 -17.52752 -16.80221 -16.63362 -16.45301 -16.34250 -16.12749 -15.93033 -15.80036 -15.30719 -15.01765 -14.94882 -14.74743 -14.47272 -14.24253 -13.78558 -13.73034 -13.46493 -13.25268 -13.18593 -12.96247 -12.65687 -12.37548 -12.33502 -12.16904 -12.13251 -11.85412 -11.70410 -11.57560 -11.33129 -11.27826 -10.93597 -10.62331 -10.44801 -10.21360 -9.99214 -9.77446 -4.88635 -0.40689 0.15719 1.28966 1.48833 1.62072 1.72239 1.78952 2.00074 2.04040 2.58258 2.88496 3.11466 3.41215 3.47810 3.53059 3.60969 3.69855 3.72902 3.79522 4.02796 4.06419 4.11897 4.16765 4.24678 4.28556 4.30877 4.38149 4.42723 4.44856 4.47484 4.61916 4.64996 4.77425 4.81060 4.92517 5.01776 5.03451 5.04575 5.11146 5.13641 5.15894 5.25206 5.27245 5.29263 5.48303 5.60863 6.20465 6.46872 6.50384 6.57031 6.70016 7.19573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.236 4.236 3 C 0.167 3.833 4 O -0.400 6.400 5 C 0.089 3.911 6 H 0.090 0.910 7 C -0.136 4.136 8 C -0.119 4.119 9 C 0.145 3.855 10 H 0.062 0.938 11 N -0.708 5.708 12 C 0.555 3.445 13 O -0.565 6.565 14 C -0.179 4.179 15 C 0.150 3.850 16 O -0.499 6.499 17 C -0.141 4.141 18 C -0.070 4.070 19 C -0.095 4.095 20 O -0.548 6.548 21 Si 0.781 3.219 22 C -0.132 4.132 23 C -0.052 4.052 24 C -0.111 4.111 25 C -0.112 4.112 26 H 0.248 0.752 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.416 0.584 34 H 0.406 0.594 35 H 0.132 0.868 36 H 0.124 0.876 37 H 0.388 0.612 38 H -0.308 1.308 39 H -0.267 1.267 40 H 0.163 0.837 41 H 0.171 0.829 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.058 0.942 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.206 3.113 8.615 9.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.236 4.236 3 C 0.092 3.908 4 O -0.320 6.320 5 C 0.032 3.968 6 H 0.108 0.892 7 C -0.175 4.175 8 C -0.158 4.158 9 C 0.040 3.960 10 H 0.081 0.919 11 N -0.360 5.360 12 C 0.343 3.657 13 O -0.445 6.445 14 C -0.183 4.183 15 C 0.104 3.896 16 O -0.312 6.312 17 C -0.159 4.159 18 C -0.071 4.071 19 C -0.203 4.203 20 O -0.357 6.357 21 Si 0.684 3.316 22 C -0.150 4.150 23 C -0.070 4.070 24 C -0.149 4.149 25 C -0.150 4.150 26 H 0.264 0.736 27 H 0.112 0.888 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.255 0.745 34 H 0.266 0.734 35 H 0.150 0.850 36 H 0.141 0.859 37 H 0.238 0.762 38 H -0.236 1.236 39 H -0.193 1.193 40 H 0.180 0.820 41 H 0.189 0.811 42 H 0.105 0.895 43 H 0.117 0.883 44 H 0.077 0.923 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.419 2.459 8.300 8.988 hybrid contribution -0.307 0.842 -1.472 1.724 sum 2.112 3.301 6.828 7.873 Atomic orbital electron populations 1.25858 0.96995 0.98335 0.97734 1.23273 0.95199 1.02446 1.02714 1.19322 0.84060 0.95247 0.92140 1.87967 1.22721 1.66118 1.55236 1.22314 0.79392 0.95582 0.99468 0.89217 1.21963 0.95357 0.99807 1.00369 1.21791 0.95031 0.96739 1.02225 1.21002 0.79238 0.95717 0.99995 0.91926 1.45817 1.07675 1.62999 1.19546 1.18341 0.87425 0.77474 0.82435 1.90818 1.68295 1.45830 1.39520 1.20467 0.92968 1.06623 0.98233 1.18781 0.89953 0.92337 0.88519 1.84714 1.73683 1.37967 1.34831 1.21344 0.92360 1.01460 1.00763 1.20485 0.96507 0.96286 0.93814 1.25481 0.92422 0.99248 1.03130 1.86608 1.78136 1.24703 1.46207 0.93900 0.76193 0.83082 0.78380 1.21285 0.94659 1.01054 0.97961 1.21510 0.93855 0.94443 0.97184 1.21722 0.94381 0.98472 1.00333 1.21526 0.95420 0.95779 1.02311 0.73598 0.88821 0.89799 0.91060 0.92835 0.93556 0.89335 0.74546 0.73443 0.84961 0.85857 0.76237 1.23646 1.19309 0.81951 0.81147 0.89497 0.88274 0.92322 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.49 19.25 74.32 1.43 0.94 16 2 C -0.24 -1.25 13.73 31.13 0.43 -0.83 16 3 C 0.17 0.15 6.22 70.18 0.44 0.58 16 4 O -0.40 -1.63 9.95 -148.98 -1.48 -3.11 16 5 C 0.09 -0.17 2.61 30.60 0.08 -0.09 16 6 H 0.09 -0.60 7.79 -2.39 -0.02 -0.62 16 7 C -0.14 -0.02 5.54 30.60 0.17 0.15 16 8 C -0.12 0.09 5.49 30.59 0.17 0.26 16 9 C 0.15 -0.23 2.45 45.00 0.11 -0.12 16 10 H 0.06 0.31 7.58 -2.39 -0.02 0.29 16 11 N -0.71 2.16 5.03 -445.70 -2.24 -0.09 16 12 C 0.56 2.69 7.73 86.70 0.67 3.36 16 13 O -0.57 -8.03 14.82 16.93 0.25 -7.78 16 14 C -0.18 -0.27 5.89 -20.01 -0.12 -0.39 16 15 C 0.15 0.71 6.72 22.84 0.15 0.87 16 16 O -0.50 -4.10 11.58 -68.76 -0.80 -4.90 16 17 C -0.14 -0.25 9.60 22.34 0.21 -0.03 16 18 C -0.07 0.19 5.35 -19.83 -0.11 0.09 16 19 C -0.10 0.33 2.79 71.23 0.20 0.52 16 20 O -0.55 -0.12 12.83 -148.98 -1.91 -2.03 16 21 Si 0.78 -4.89 29.86 68.60 2.05 -2.84 16 22 C -0.13 0.90 8.64 22.24 0.19 1.09 16 23 C -0.05 0.33 9.54 22.52 0.21 0.54 16 24 C -0.11 0.81 5.39 30.61 0.17 0.97 16 25 C -0.11 0.37 5.58 30.61 0.17 0.54 16 26 H 0.25 -1.16 7.80 -4.41 -0.03 -1.20 16 27 H 0.09 -0.35 8.08 -2.39 -0.02 -0.37 16 28 H 0.08 -0.16 7.87 -2.39 -0.02 -0.18 16 29 H 0.07 -0.03 7.87 -2.39 -0.02 -0.05 16 30 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 33 H 0.42 -4.45 6.63 -92.71 -0.61 -5.07 16 34 H 0.41 0.64 9.06 -74.06 -0.67 -0.03 16 35 H 0.13 0.32 8.06 -2.91 -0.02 0.29 16 36 H 0.12 -0.48 7.96 -2.39 -0.02 -0.50 16 37 H 0.39 -2.36 8.70 -74.06 -0.64 -3.01 16 38 H -0.31 -0.85 7.11 99.48 0.71 -0.14 16 39 H -0.27 1.22 7.00 99.48 0.70 1.92 16 40 H 0.16 -1.98 4.81 -2.91 -0.01 -1.99 16 41 H 0.17 -2.46 6.40 -2.91 -0.02 -2.48 16 42 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 43 H 0.10 -1.18 8.14 -2.39 -0.02 -1.20 16 44 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 45 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 Total: 0.00 -27.35 376.31 -0.42 -27.76 By element: Atomic # 1 Polarization: -14.61 SS G_CDS: -0.87 Total: -15.48 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 4.58 Total: 8.46 kcal Atomic # 7 Polarization: 2.16 SS G_CDS: -2.24 Total: -0.09 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -3.94 Total: -17.82 kcal Atomic # 14 Polarization: -4.89 SS G_CDS: 2.05 Total: -2.84 kcal Total: -27.35 -0.42 -27.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14940684_13422076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.670 kcal (2) G-P(sol) polarization free energy of solvation -27.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds