Wall clock time and date at job start Sun Mar 7 2021 02:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42901 * 109.47131 * 248.27571 * 3 2 1 5 5 C 1.42899 * 114.00092 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.47275 * 330.00379 * 5 4 3 7 7 C 1.53001 * 109.46898 * 90.00230 * 5 4 3 8 8 C 1.52997 * 109.47049 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.47139 * 299.99906 * 8 7 5 10 10 H 1.09003 * 109.46933 * 300.00360 * 9 8 7 11 11 N 1.46493 * 109.47382 * 180.02562 * 9 8 7 12 12 C 1.34778 * 119.99979 * 85.00040 * 11 9 8 13 13 O 1.21658 * 120.00033 * 359.97438 * 12 11 9 14 14 C 1.47053 * 120.00051 * 180.02562 * 12 11 9 15 15 C 1.36221 * 123.49196 * 179.97438 * 14 12 11 16 16 Cl 1.73604 * 124.60540 * 0.02562 * 15 14 12 17 17 S 1.70441 * 110.78958 * 179.76195 * 15 14 12 18 18 C 1.75491 * 92.46372 * 0.36048 * 17 15 14 19 19 C 1.50707 * 124.68300 * 179.90751 * 18 17 15 20 20 O 1.42903 * 109.46442 * 244.69527 * 19 18 17 21 21 Si 1.86293 * 109.47256 * 4.69093 * 19 18 17 22 22 C 1.32686 * 110.63316 * 359.63535 * 18 17 15 23 23 C 1.53001 * 109.47073 * 60.00108 * 9 8 7 24 24 C 1.52995 * 109.47196 * 210.00549 * 5 4 3 25 25 H 4.38445 * 5.44512 * 179.97438 * 4 1 2 26 26 H 1.09004 * 109.46980 * 128.28067 * 3 2 1 27 27 H 1.08998 * 109.47445 * 8.27946 * 3 2 1 28 28 H 1.09001 * 109.47007 * 300.00030 * 7 5 4 29 29 H 1.09003 * 109.47036 * 60.00003 * 7 5 4 30 30 H 1.09001 * 109.47122 * 180.02562 * 8 7 5 31 31 H 1.08994 * 109.47736 * 59.99925 * 8 7 5 32 32 H 0.97004 * 120.00350 * 265.00021 * 11 9 8 33 33 H 1.08999 * 109.47345 * 124.69597 * 19 18 17 34 34 H 0.96700 * 114.00311 * 60.00230 * 20 19 18 35 35 H 1.48501 * 109.99918 * 58.68485 * 21 19 18 36 36 H 1.48506 * 109.99973 * 180.02562 * 21 19 18 37 37 H 1.07998 * 123.45511 * 180.30142 * 22 18 17 38 38 H 1.08998 * 109.47203 * 59.99846 * 23 9 8 39 39 H 1.09001 * 109.47007 * 180.02562 * 23 9 8 40 40 H 1.08994 * 109.47686 * 60.00395 * 24 5 4 41 41 H 1.08998 * 109.47168 * 299.99690 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1222 0.4996 1.2516 5 6 4.5467 0.5414 1.3566 6 1 4.9793 -0.2537 0.7494 7 6 5.0550 1.8964 0.8600 8 6 6.5802 1.9410 0.9719 9 6 6.9904 1.7468 2.4331 10 1 6.5580 2.5419 3.0406 11 7 8.4507 1.7901 2.5404 12 6 9.0831 2.9747 2.6552 13 8 8.4412 4.0081 2.6692 14 6 10.5491 3.0183 2.7623 15 6 11.2602 4.1742 2.8804 16 17 10.5602 5.7623 2.9239 17 16 12.9299 3.8490 2.9872 18 6 12.6778 2.1170 2.8599 19 6 13.7775 1.0867 2.8773 20 8 13.8239 0.4184 1.6151 21 14 15.4099 1.9262 3.1958 22 6 11.3848 1.8394 2.7522 23 6 6.4820 0.3918 2.9297 24 6 4.9562 0.3474 2.8179 25 1 -1.0500 0.0001 -0.0001 26 1 3.0091 0.6375 -0.8067 27 1 3.0099 -1.0161 -0.1480 28 1 4.7632 2.0345 -0.1810 29 1 4.6224 2.6915 1.4673 30 1 6.9424 2.9065 0.6186 31 1 7.0126 1.1460 0.3645 32 1 8.9626 0.9662 2.5288 33 1 13.5825 0.3603 3.6662 34 1 13.9942 1.0050 0.8654 35 1 15.3638 2.6515 4.4908 36 1 16.5028 0.9209 3.2147 37 1 10.9965 0.8353 2.6662 38 1 6.9143 -0.4033 2.3222 39 1 6.7738 0.2537 3.9708 40 1 4.5942 -0.6179 3.1717 41 1 4.5237 1.1425 3.4252 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14940684_13431040.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:49:34 Heat of formation + Delta-G solvation = -28.065766 kcal Electronic energy + Delta-G solvation = -26205.342553 eV Core-core repulsion = 22206.151080 eV Total energy + Delta-G solvation = -3999.191473 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.068 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.36177 -40.14988 -38.93669 -38.09741 -37.74822 -36.92590 -35.01944 -33.91520 -31.88364 -31.68566 -30.01248 -27.82002 -26.85730 -25.69357 -23.84514 -22.94705 -22.09725 -21.28097 -20.57383 -19.45978 -19.26932 -18.12283 -17.88310 -17.80148 -16.98209 -16.70888 -16.45208 -16.33953 -15.94720 -15.74519 -15.66870 -15.07597 -14.92712 -14.79182 -14.42285 -14.33878 -14.21994 -14.06156 -13.75563 -13.46026 -13.23617 -12.92149 -12.65595 -12.59258 -12.38444 -12.35108 -12.17769 -12.12869 -11.86655 -11.85147 -11.70679 -11.33854 -11.28086 -10.93925 -10.56865 -10.45066 -10.15651 -9.89020 -9.63781 -5.13467 -0.62540 -0.18657 0.48704 0.73484 1.04894 1.19536 1.48238 1.58338 1.78342 1.90554 2.12962 2.18208 2.88051 3.29179 3.52276 3.58694 3.61406 3.71685 3.84536 3.89617 4.02320 4.09061 4.15403 4.23972 4.30079 4.35488 4.40410 4.44184 4.46049 4.47550 4.62067 4.79000 4.80842 4.92056 4.97924 5.01616 5.03418 5.10701 5.13785 5.25354 5.28524 5.47524 6.19659 6.47163 6.56497 6.71160 7.15907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.236 4.236 3 C 0.167 3.833 4 O -0.400 6.400 5 C 0.089 3.911 6 H 0.089 0.911 7 C -0.136 4.136 8 C -0.118 4.118 9 C 0.146 3.854 10 H 0.064 0.936 11 N -0.705 5.705 12 C 0.570 3.430 13 O -0.560 6.560 14 C -0.167 4.167 15 C -0.140 4.140 16 Cl 0.001 6.999 17 S 0.263 5.737 18 C -0.228 4.228 19 C -0.017 4.017 20 O -0.542 6.542 21 Si 0.711 3.289 22 C -0.067 4.067 23 C -0.112 4.112 24 C -0.112 4.112 25 H 0.248 0.752 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.415 0.585 33 H 0.136 0.864 34 H 0.398 0.602 35 H -0.263 1.263 36 H -0.266 1.266 37 H 0.182 0.818 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.796 -5.466 -2.711 7.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.236 4.236 3 C 0.092 3.908 4 O -0.320 6.320 5 C 0.032 3.968 6 H 0.107 0.893 7 C -0.174 4.174 8 C -0.157 4.157 9 C 0.041 3.959 10 H 0.083 0.917 11 N -0.357 5.357 12 C 0.356 3.644 13 O -0.440 6.440 14 C -0.186 4.186 15 C -0.287 4.287 16 Cl 0.030 6.970 17 S 0.529 5.471 18 C -0.346 4.346 19 C -0.131 4.131 20 O -0.351 6.351 21 Si 0.614 3.386 22 C -0.096 4.096 23 C -0.150 4.150 24 C -0.150 4.150 25 H 0.264 0.736 26 H 0.103 0.897 27 H 0.111 0.889 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.253 0.747 33 H 0.153 0.847 34 H 0.249 0.751 35 H -0.189 1.189 36 H -0.191 1.191 37 H 0.199 0.801 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.034 -4.066 -1.496 7.428 hybrid contribution -1.938 -0.754 -0.059 2.080 sum 4.096 -4.820 -1.555 6.514 Atomic orbital electron populations 1.25861 0.96985 0.99249 0.96790 1.23270 0.95187 1.02038 1.03150 1.19319 0.84079 1.00298 0.87075 1.87967 1.22681 1.85990 1.35374 1.22306 0.79411 0.97062 0.97978 0.89340 1.21956 0.95348 0.98122 1.01998 1.21780 0.95009 1.02423 0.96442 1.21012 0.79059 0.99206 0.96604 0.91737 1.45753 1.07730 1.08270 1.73902 1.17711 0.86441 0.84065 0.76187 1.90865 1.67828 1.34228 1.51044 1.20350 0.94459 0.92413 1.11415 1.25816 1.01695 0.91813 1.09371 1.98427 1.83593 1.18745 1.96214 1.83198 0.96937 0.99556 1.67448 1.24948 0.99773 0.97742 1.12143 1.24410 1.02153 0.95794 0.90732 1.86517 1.94703 1.37964 1.15868 0.94322 0.75706 0.83047 0.85520 1.21141 0.90929 0.98447 0.99061 1.21716 0.94480 0.95544 1.03231 1.21516 0.95295 1.03383 0.94787 0.73580 0.89742 0.88906 0.90964 0.92733 0.93177 0.89514 0.74716 0.84741 0.75119 1.18903 1.19095 0.80127 0.88512 0.89710 0.89760 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.54 19.25 74.32 1.43 0.89 16 2 C -0.24 -1.34 13.73 31.12 0.43 -0.91 16 3 C 0.17 0.22 6.22 70.18 0.44 0.66 16 4 O -0.40 -1.83 9.95 -148.98 -1.48 -3.31 16 5 C 0.09 -0.11 2.61 30.59 0.08 -0.03 16 6 H 0.09 -0.51 7.79 -2.39 -0.02 -0.53 16 7 C -0.14 -0.06 5.54 30.59 0.17 0.11 16 8 C -0.12 0.06 5.49 30.59 0.17 0.23 16 9 C 0.15 -0.10 2.45 44.99 0.11 0.01 16 10 H 0.06 0.36 7.57 -2.39 -0.02 0.34 16 11 N -0.70 1.18 5.06 -446.14 -2.26 -1.08 16 12 C 0.57 3.16 7.75 86.55 0.67 3.84 16 13 O -0.56 -7.80 14.57 -4.21 -0.06 -7.86 16 14 C -0.17 -0.36 5.98 -19.84 -0.12 -0.48 16 15 C -0.14 -0.52 6.87 67.35 0.46 -0.05 16 16 Cl 0.00 0.01 27.20 -2.72 -0.07 -0.06 16 17 S 0.26 -0.75 20.19 -56.49 -1.14 -1.89 16 18 C -0.23 1.20 5.65 24.52 0.14 1.34 16 19 C -0.02 0.12 2.94 71.24 0.21 0.33 16 20 O -0.54 3.72 12.88 -148.98 -1.92 1.81 16 21 Si 0.71 -4.36 30.92 68.60 2.12 -2.24 16 22 C -0.07 0.30 9.75 22.70 0.22 0.52 16 23 C -0.11 0.66 5.39 30.61 0.17 0.82 16 24 C -0.11 0.26 5.58 30.61 0.17 0.43 16 25 H 0.25 -1.10 7.80 -4.42 -0.03 -1.13 16 26 H 0.08 -0.14 7.87 -2.38 -0.02 -0.16 16 27 H 0.09 -0.30 8.08 -2.39 -0.02 -0.31 16 28 H 0.07 -0.03 7.87 -2.39 -0.02 -0.04 16 29 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 32 H 0.42 -3.46 7.15 -92.71 -0.66 -4.12 16 33 H 0.14 -1.08 7.96 -2.39 -0.02 -1.10 16 34 H 0.40 -5.59 8.70 -74.06 -0.64 -6.23 16 35 H -0.26 0.34 7.11 99.48 0.71 1.04 16 36 H -0.27 -0.07 7.11 99.48 0.71 0.63 16 37 H 0.18 -1.80 7.10 -2.91 -0.02 -1.82 16 38 H 0.10 -0.98 8.14 -2.39 -0.02 -1.00 16 39 H 0.08 -0.55 8.14 -2.39 -0.02 -0.57 16 40 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 41 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 Total: 0.00 -21.85 375.07 -0.26 -22.11 By element: Atomic # 1 Polarization: -14.98 SS G_CDS: -0.20 Total: -15.18 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 4.74 Total: 7.70 kcal Atomic # 7 Polarization: 1.18 SS G_CDS: -2.26 Total: -1.08 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -3.46 Total: -9.37 kcal Atomic # 14 Polarization: -4.36 SS G_CDS: 2.12 Total: -2.24 kcal Atomic # 16 Polarization: -0.75 SS G_CDS: -1.14 Total: -1.89 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -0.07 Total: -0.06 kcal Total: -21.85 -0.26 -22.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14940684_13431040.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.955 kcal (2) G-P(sol) polarization free energy of solvation -21.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds