Wall clock time and date at job start Sun Mar 7 2021 02:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47092 * 251.18897 * 3 2 1 5 5 C 1.42903 * 113.99907 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46929 * 30.00497 * 5 4 3 7 7 C 1.53002 * 109.46797 * 149.99832 * 5 4 3 8 8 C 1.52997 * 109.46978 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47415 * 300.00098 * 8 7 5 10 10 H 1.09002 * 109.47070 * 300.00053 * 9 8 7 11 11 N 1.46505 * 109.47411 * 179.97438 * 9 8 7 12 12 C 1.34769 * 119.99798 * 155.00053 * 11 9 8 13 13 O 1.21280 * 120.00742 * 0.02562 * 12 11 9 14 14 C 1.50705 * 119.99510 * 179.97438 * 12 11 9 15 15 C 1.53546 * 109.81918 * 80.86669 * 14 12 11 16 16 C 1.53039 * 108.55953 * 180.48507 * 15 14 12 17 17 C 1.50205 * 110.32081 * 310.42780 * 16 15 14 18 18 C 1.50697 * 118.54878 * 200.03227 * 17 16 15 19 19 O 1.42895 * 109.47252 * 70.00081 * 18 17 16 20 20 Si 1.86303 * 109.47018 * 190.00013 * 18 17 16 21 21 C 1.31119 * 122.90228 * 20.05239 * 17 16 15 22 22 N 1.38966 * 121.87228 * 359.66344 * 21 17 16 23 23 C 1.52997 * 109.46817 * 59.99873 * 9 8 7 24 24 C 1.52992 * 109.47482 * 300.00014 * 23 9 8 25 25 H 4.38439 * 5.44368 * 179.97438 * 4 1 2 26 26 H 1.09006 * 109.47392 * 131.19017 * 3 2 1 27 27 H 1.09000 * 109.47279 * 11.18903 * 3 2 1 28 28 H 1.09002 * 109.47097 * 60.00124 * 7 5 4 29 29 H 1.08998 * 109.47844 * 300.00339 * 7 5 4 30 30 H 1.09000 * 109.47140 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.47497 * 60.00450 * 8 7 5 32 32 H 0.97005 * 119.99239 * 335.00029 * 11 9 8 33 33 H 1.08993 * 109.82014 * 320.00205 * 14 12 11 34 34 H 1.08996 * 109.62278 * 300.20618 * 15 14 12 35 35 H 1.09001 * 109.62008 * 60.58244 * 15 14 12 36 36 H 1.08998 * 109.32859 * 70.68652 * 16 15 14 37 37 H 1.09005 * 109.32698 * 190.33977 * 16 15 14 38 38 H 1.09002 * 109.46549 * 309.99837 * 18 17 16 39 39 H 0.96695 * 113.99959 * 180.02562 * 19 18 17 40 40 H 1.48493 * 110.00012 * 299.99762 * 20 18 17 41 41 H 1.48497 * 109.99903 * 61.31781 * 20 18 17 42 42 H 1.08001 * 119.07186 * 179.61486 * 21 17 16 43 43 H 0.96998 * 120.57920 * 193.28864 * 22 21 17 44 44 H 1.09002 * 109.47153 * 60.00231 * 23 9 8 45 45 H 1.08998 * 109.47533 * 179.97438 * 23 9 8 46 46 H 1.09002 * 109.47103 * 300.00247 * 24 23 9 47 47 H 1.08996 * 109.47747 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1221 0.4353 1.2753 5 6 4.5467 0.4718 1.3823 6 1 4.9792 0.6813 0.4040 7 6 4.9562 1.5693 2.3665 8 6 6.4813 1.6079 2.4816 9 6 6.9893 0.2555 2.9855 10 1 6.5563 0.0463 3.9637 11 7 8.4498 0.2923 3.0951 12 6 9.0821 -0.5332 3.9524 13 8 8.4424 -1.3068 4.6328 14 6 10.5845 -0.4957 4.0646 15 6 11.0100 0.6695 4.9696 16 6 12.5380 0.6882 5.0536 17 6 13.0590 -0.6813 5.3843 18 6 14.4477 -0.8047 5.9565 19 8 14.4628 -0.2835 7.2869 20 14 14.9497 -2.5986 5.9866 21 6 12.3591 -1.7741 5.1968 22 7 11.0697 -1.7399 4.6796 23 6 6.5797 -0.8419 2.0012 24 6 5.0546 -0.8807 1.8862 25 1 -1.0500 0.0001 -0.0002 26 1 3.0091 0.6776 -0.7734 27 1 3.0098 -1.0073 -0.1994 28 1 4.5236 1.3598 3.3449 29 1 4.5940 2.5327 2.0079 30 1 6.7731 2.3895 3.1831 31 1 6.9144 1.8172 1.5034 32 1 8.9615 0.9109 2.5505 33 1 11.0262 -0.3756 3.0754 34 1 10.6552 1.6095 4.5472 35 1 10.5876 0.5329 5.9651 36 1 12.9481 1.0086 4.0959 37 1 12.8481 1.3868 5.8308 38 1 15.1468 -0.2421 5.3378 39 1 15.3271 -0.3304 7.7178 40 1 14.0042 -3.3765 6.8268 41 1 14.9687 -3.1439 4.6055 42 1 12.7973 -2.7280 5.4507 43 1 10.4990 -2.5229 4.7249 44 1 7.0127 -0.6327 1.0230 45 1 6.9419 -1.8054 2.3598 46 1 4.6216 -1.0899 2.8644 47 1 4.7628 -1.6622 1.1846 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14940684_15413834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:49:47 Heat of formation + Delta-G solvation = -40.845731 kcal Electronic energy + Delta-G solvation = -26912.813611 eV Core-core repulsion = 23063.666635 eV Total energy + Delta-G solvation = -3849.146975 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.177 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.65513 -40.41229 -39.48791 -37.97585 -37.31830 -35.18209 -34.04232 -33.38401 -33.10200 -31.92633 -30.04465 -27.97593 -27.16468 -25.47076 -24.04181 -23.73850 -23.00544 -21.70326 -21.18963 -19.50627 -19.23529 -19.11819 -18.22071 -17.94722 -17.58916 -17.50567 -16.78103 -16.44610 -16.19737 -15.99608 -15.49896 -15.30625 -15.11390 -14.97096 -14.66104 -14.53715 -14.36272 -14.24165 -13.83426 -13.79162 -13.50579 -13.33590 -13.27885 -13.15063 -12.71619 -12.53174 -12.39532 -12.21630 -12.03270 -11.89908 -11.74422 -11.64472 -11.40149 -11.37390 -11.31755 -10.92023 -10.49058 -10.18635 -10.11078 -8.60227 -4.92412 1.16604 1.34756 1.38233 1.45543 1.63523 1.76007 1.80097 1.97676 2.48010 2.84871 3.43859 3.49611 3.54940 3.58242 3.63704 3.69459 3.90897 3.97571 3.98722 4.04842 4.11719 4.17257 4.20076 4.26534 4.32376 4.35609 4.40025 4.43357 4.51899 4.55732 4.57817 4.71765 4.76145 4.87935 4.97193 4.98263 4.98979 5.06568 5.09742 5.11761 5.17999 5.20729 5.23689 5.40072 5.47223 6.10916 6.16466 6.38715 6.54192 6.61383 7.02782 7.05714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.237 4.237 3 C 0.168 3.832 4 O -0.400 6.400 5 C 0.089 3.911 6 H 0.090 0.910 7 C -0.113 4.113 8 C -0.111 4.111 9 C 0.143 3.857 10 H 0.062 0.938 11 N -0.703 5.703 12 C 0.514 3.486 13 O -0.576 6.576 14 C 0.138 3.862 15 C -0.121 4.121 16 C -0.053 4.053 17 C -0.242 4.242 18 C -0.051 4.051 19 O -0.570 6.570 20 Si 0.749 3.251 21 C 0.116 3.884 22 N -0.741 5.741 23 C -0.118 4.118 24 C -0.137 4.137 25 H 0.248 0.752 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.421 0.579 33 H 0.117 0.883 34 H 0.110 0.890 35 H 0.048 0.952 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.397 0.603 40 H -0.306 1.306 41 H -0.291 1.291 42 H 0.116 0.884 43 H 0.404 0.596 44 H 0.088 0.912 45 H 0.048 0.952 46 H 0.053 0.947 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.144 4.625 -5.736 8.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.237 4.237 3 C 0.092 3.908 4 O -0.321 6.321 5 C 0.032 3.968 6 H 0.107 0.893 7 C -0.151 4.151 8 C -0.149 4.149 9 C 0.039 3.961 10 H 0.080 0.920 11 N -0.355 5.355 12 C 0.300 3.700 13 O -0.455 6.455 14 C 0.029 3.971 15 C -0.160 4.160 16 C -0.090 4.090 17 C -0.253 4.253 18 C -0.163 4.163 19 O -0.379 6.379 20 Si 0.658 3.342 21 C -0.005 4.005 22 N -0.374 5.374 23 C -0.157 4.157 24 C -0.175 4.175 25 H 0.264 0.736 26 H 0.111 0.889 27 H 0.102 0.898 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.117 0.883 32 H 0.259 0.741 33 H 0.135 0.865 34 H 0.128 0.872 35 H 0.067 0.933 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.247 0.753 40 H -0.235 1.235 41 H -0.218 1.218 42 H 0.132 0.868 43 H 0.239 0.761 44 H 0.107 0.893 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.721 3.554 -5.498 7.530 hybrid contribution -0.758 -0.468 -0.183 0.910 sum 2.963 3.086 -5.681 7.112 Atomic orbital electron populations 1.25866 0.96994 0.99340 0.96607 1.23265 0.95192 1.02019 1.03250 1.19319 0.84094 1.00969 0.86373 1.87971 1.22694 1.87948 1.33442 1.22314 0.79432 0.94770 1.00261 0.89258 1.21520 0.95450 0.98777 0.99344 1.21710 0.94372 0.95069 1.03769 1.21025 0.79312 0.96577 0.99202 0.92021 1.45840 1.07746 1.40104 1.41848 1.20820 0.90223 0.80056 0.78947 1.90729 1.68562 1.40541 1.45683 1.21185 0.89738 0.86811 0.99331 1.21845 0.97333 0.97660 0.99130 1.20037 0.93101 0.93342 1.02540 1.20484 0.97632 0.95129 1.12007 1.24470 0.96287 1.09800 0.85744 1.86456 1.38537 1.85670 1.27188 0.94655 0.87163 0.74080 0.78312 1.20316 0.85984 0.97204 0.96959 1.44335 1.12831 1.13977 1.66263 1.21784 0.95048 0.98492 1.00391 1.21962 0.95392 0.98218 1.01953 0.73566 0.88855 0.89789 0.92363 0.89664 0.89470 0.88315 0.74122 0.86540 0.87189 0.93295 0.89334 0.90520 0.89666 0.75281 1.23470 1.21835 0.86757 0.76062 0.89329 0.93330 0.92853 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.51 19.25 74.32 1.43 0.92 16 2 C -0.24 -1.29 13.73 31.12 0.43 -0.86 16 3 C 0.17 0.17 6.22 70.17 0.44 0.61 16 4 O -0.40 -1.70 9.95 -148.98 -1.48 -3.18 16 5 C 0.09 -0.16 2.61 30.60 0.08 -0.08 16 6 H 0.09 -0.58 7.79 -2.39 -0.02 -0.59 16 7 C -0.11 0.34 5.57 30.59 0.17 0.51 16 8 C -0.11 0.80 5.39 30.59 0.16 0.96 16 9 C 0.14 -0.29 2.45 44.99 0.11 -0.18 16 10 H 0.06 0.29 7.58 -2.39 -0.02 0.28 16 11 N -0.70 2.95 5.08 -442.53 -2.25 0.70 16 12 C 0.51 1.51 7.05 87.66 0.62 2.13 16 13 O -0.58 -7.36 15.74 -3.03 -0.05 -7.41 16 14 C 0.14 0.03 3.36 44.33 0.15 0.18 16 15 C -0.12 0.05 5.47 30.79 0.17 0.22 16 16 C -0.05 -0.02 5.85 29.71 0.17 0.16 16 17 C -0.24 -1.07 5.40 -16.76 -0.09 -1.16 16 18 C -0.05 -0.03 2.80 71.24 0.20 0.17 16 19 O -0.57 -0.96 12.86 -148.98 -1.92 -2.88 16 20 Si 0.75 -0.01 29.91 68.60 2.05 2.04 16 21 C 0.12 0.76 9.62 83.40 0.80 1.56 16 22 N -0.74 -4.15 5.47 -328.96 -1.80 -5.95 16 23 C -0.12 0.18 5.49 30.59 0.17 0.35 16 24 C -0.14 0.02 5.54 30.59 0.17 0.19 16 25 H 0.25 -1.14 7.80 -4.42 -0.03 -1.18 16 26 H 0.09 -0.33 8.09 -2.38 -0.02 -0.35 16 27 H 0.08 -0.16 7.87 -2.39 -0.02 -0.18 16 28 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 29 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 30 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 31 H 0.10 -1.14 8.14 -2.39 -0.02 -1.16 16 32 H 0.42 -4.83 8.60 -92.70 -0.80 -5.62 16 33 H 0.12 -0.59 8.14 -2.39 -0.02 -0.61 16 34 H 0.11 -0.73 8.14 -2.39 -0.02 -0.75 16 35 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 37 H 0.08 0.14 8.14 -2.38 -0.02 0.12 16 38 H 0.09 -0.31 7.96 -2.39 -0.02 -0.33 16 39 H 0.40 -3.39 8.74 -74.06 -0.65 -4.03 16 40 H -0.31 -2.57 6.89 99.48 0.69 -1.89 16 41 H -0.29 -1.53 7.11 99.48 0.71 -0.83 16 42 H 0.12 0.84 4.34 -2.91 -0.01 0.82 16 43 H 0.40 2.85 8.10 -92.71 -0.75 2.10 16 44 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 45 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 46 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 47 H 0.07 -0.05 7.87 -2.39 -0.02 -0.07 16 Total: 0.00 -25.10 381.25 -1.46 -26.56 By element: Atomic # 1 Polarization: -14.37 SS G_CDS: -1.20 Total: -15.57 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 5.18 Total: 5.67 kcal Atomic # 7 Polarization: -1.20 SS G_CDS: -4.05 Total: -5.24 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -3.44 Total: -13.46 kcal Atomic # 14 Polarization: -0.01 SS G_CDS: 2.05 Total: 2.04 kcal Total: -25.10 -1.46 -26.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14940684_15413834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.286 kcal (2) G-P(sol) polarization free energy of solvation -25.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds