Wall clock time and date at job start Sun Mar 7 2021 02:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47044 * 327.60747 * 3 2 1 5 5 C 1.42905 * 113.99778 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47174 * 330.00433 * 5 4 3 7 7 C 1.53000 * 109.46996 * 90.00183 * 5 4 3 8 8 C 1.52996 * 109.47210 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47359 * 300.00315 * 8 7 5 10 10 H 1.09004 * 109.46804 * 299.99498 * 9 8 7 11 11 N 1.46496 * 109.47346 * 180.02562 * 9 8 7 12 12 C 1.34770 * 120.00442 * 84.99409 * 11 9 8 13 13 O 1.21283 * 119.99843 * 0.02562 * 12 11 9 14 14 C 1.50706 * 120.00151 * 179.97438 * 12 11 9 15 15 O 1.42902 * 109.46724 * 180.02562 * 14 12 11 16 16 C 1.35907 * 116.99601 * 180.02562 * 15 14 12 17 17 C 1.38706 * 120.05786 * 180.02562 * 16 15 14 18 18 C 1.50704 * 120.02495 * 359.97438 * 17 16 15 19 19 O 1.42898 * 109.47495 * 75.00216 * 18 17 16 20 20 Si 1.86306 * 109.46956 * 195.00227 * 18 17 16 21 21 C 1.38162 * 119.94851 * 180.02562 * 17 16 15 22 22 C 1.38240 * 120.05364 * 359.97438 * 21 17 16 23 23 C 1.38288 * 120.11331 * 0.02571 * 22 21 17 24 24 C 1.38123 * 120.05344 * 359.68056 * 23 22 21 25 25 C 1.53000 * 109.47216 * 59.99689 * 9 8 7 26 26 C 1.53004 * 109.46773 * 210.00101 * 5 4 3 27 27 H 4.38443 * 5.44458 * 180.02562 * 4 1 2 28 28 H 1.08997 * 109.47005 * 207.60807 * 3 2 1 29 29 H 1.08997 * 109.46973 * 87.61000 * 3 2 1 30 30 H 1.09000 * 109.47214 * 300.00331 * 7 5 4 31 31 H 1.09008 * 109.47142 * 59.99497 * 7 5 4 32 32 H 1.08999 * 109.47114 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.46839 * 60.00324 * 8 7 5 34 34 H 0.96998 * 119.99592 * 265.00021 * 11 9 8 35 35 H 1.08996 * 109.47327 * 299.99982 * 14 12 11 36 36 H 1.08999 * 109.46579 * 60.00673 * 14 12 11 37 37 H 1.09008 * 109.47079 * 314.99579 * 18 17 16 38 38 H 0.96695 * 114.00478 * 59.99555 * 19 18 17 39 39 H 1.48500 * 109.99836 * 179.97438 * 20 18 17 40 40 H 1.48504 * 109.99435 * 301.31506 * 20 18 17 41 41 H 1.07996 * 119.97545 * 179.97438 * 21 17 16 42 42 H 1.08002 * 119.94660 * 180.02562 * 22 21 17 43 43 H 1.08000 * 119.97285 * 179.97438 * 23 22 21 44 44 H 1.08008 * 120.02998 * 180.32241 * 24 23 22 45 45 H 1.09000 * 109.46884 * 180.02562 * 25 9 8 46 46 H 1.09000 * 109.46955 * 60.00007 * 25 9 8 47 47 H 1.08996 * 109.46889 * 299.99778 * 26 5 4 48 48 H 1.08999 * 109.47130 * 60.00487 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1228 -1.1368 0.7218 5 6 4.5474 -1.2317 0.7817 6 1 4.9795 -0.7820 -0.1123 7 6 5.0561 -0.4926 2.0210 8 6 6.5813 -0.5948 2.0856 9 6 6.9910 -2.0667 2.1656 10 1 6.5586 -2.5161 3.0596 11 7 8.4513 -2.1645 2.2280 12 6 9.0839 -2.0578 3.4133 13 8 8.4440 -1.8813 4.4283 14 6 10.5862 -2.1589 3.4775 15 8 11.0156 -2.0161 4.8329 16 6 12.3527 -2.0829 5.0668 17 6 12.8394 -1.9528 6.3591 18 6 11.8857 -1.7366 7.5058 19 8 11.2218 -2.9646 7.8113 20 14 12.8335 -1.1546 9.0004 21 6 14.1992 -2.0206 6.5942 22 6 15.0745 -2.2184 5.5427 23 6 14.5919 -2.3483 4.2532 24 6 13.2330 -2.2874 4.0138 25 6 6.4823 -2.8058 0.9262 26 6 4.9575 -2.7036 0.8614 27 1 -1.0498 -0.0004 0.0000 28 1 3.0089 0.9115 0.4762 29 1 3.0093 -0.0420 -1.0267 30 1 4.7638 0.5559 1.9643 31 1 4.6240 -0.9423 2.9151 32 1 6.9437 -0.0679 2.9683 33 1 7.0136 -0.1453 1.1916 34 1 8.9630 -2.3060 1.4162 35 1 10.9015 -3.1306 3.0973 36 1 11.0296 -1.3698 2.8704 37 1 11.1478 -0.9839 7.2278 38 1 11.8183 -3.6811 8.0676 39 1 11.9042 -0.9372 10.1381 40 1 13.8642 -2.1577 9.3704 41 1 14.5786 -1.9190 7.6002 42 1 16.1371 -2.2715 5.7284 43 1 15.2779 -2.5024 3.4334 44 1 12.8561 -2.3942 3.0073 45 1 6.7738 -3.8545 0.9835 46 1 6.9147 -2.3563 0.0323 47 1 4.5255 -3.1531 1.7555 48 1 4.5952 -3.2301 -0.0215 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14940684_2989392.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:49:57 Heat of formation + Delta-G solvation = -63.512410 kcal Electronic energy + Delta-G solvation = -29512.935769 eV Core-core repulsion = 25308.634949 eV Total energy + Delta-G solvation = -4204.300819 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.166 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.67612 -41.00262 -40.00254 -38.63421 -37.83718 -37.58978 -35.12224 -33.98161 -32.76316 -31.91380 -31.40685 -30.46758 -28.77588 -27.55325 -26.69316 -24.03670 -23.76011 -22.91771 -22.59691 -21.62269 -21.08717 -19.52450 -19.39549 -18.43351 -18.07280 -17.91458 -17.46539 -17.28704 -16.94758 -16.70009 -16.48878 -16.24858 -16.03021 -15.61740 -15.53450 -15.08397 -15.02966 -14.95867 -14.82460 -14.32233 -14.19660 -13.83314 -13.73018 -13.51029 -13.45299 -13.26310 -13.05202 -12.69800 -12.53044 -12.39029 -12.20281 -12.11298 -11.89615 -11.86771 -11.72853 -11.68886 -11.35970 -11.30602 -10.99383 -10.54336 -10.47461 -10.17021 -9.96791 -9.20762 -4.96774 0.24447 0.43039 1.27755 1.42764 1.43793 1.51502 1.53232 1.77270 1.92432 2.57757 2.71012 2.87263 3.44580 3.48398 3.51462 3.60223 3.68543 3.72482 3.90010 3.97390 3.99289 4.03361 4.09002 4.13353 4.14238 4.21477 4.28261 4.32662 4.34973 4.37991 4.41745 4.45138 4.54377 4.58593 4.68103 4.77981 4.89491 4.98851 5.00067 5.00286 5.08151 5.11330 5.21576 5.25160 5.29518 5.38664 5.41922 5.54240 5.77246 6.18195 6.28873 6.47467 6.52018 6.55389 7.12981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.237 4.237 3 C 0.167 3.833 4 O -0.401 6.401 5 C 0.090 3.910 6 H 0.092 0.908 7 C -0.138 4.138 8 C -0.119 4.119 9 C 0.144 3.856 10 H 0.058 0.942 11 N -0.704 5.704 12 C 0.511 3.489 13 O -0.572 6.572 14 C 0.037 3.963 15 O -0.314 6.314 16 C 0.129 3.871 17 C -0.165 4.165 18 C -0.083 4.083 19 O -0.549 6.549 20 Si 0.783 3.217 21 C -0.088 4.088 22 C -0.154 4.154 23 C -0.074 4.074 24 C -0.211 4.211 25 C -0.110 4.110 26 C -0.113 4.113 27 H 0.248 0.752 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.422 0.578 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.095 0.905 38 H 0.381 0.619 39 H -0.309 1.309 40 H -0.264 1.264 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.154 0.846 44 H 0.156 0.844 45 H 0.086 0.914 46 H 0.101 0.899 47 H 0.056 0.944 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.153 1.311 -9.403 11.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.237 4.237 3 C 0.092 3.908 4 O -0.321 6.321 5 C 0.033 3.967 6 H 0.109 0.891 7 C -0.176 4.176 8 C -0.158 4.158 9 C 0.039 3.961 10 H 0.076 0.924 11 N -0.358 5.358 12 C 0.297 3.703 13 O -0.450 6.450 14 C -0.041 4.041 15 O -0.227 6.227 16 C 0.083 3.917 17 C -0.166 4.166 18 C -0.191 4.191 19 O -0.357 6.357 20 Si 0.686 3.314 21 C -0.106 4.106 22 C -0.172 4.172 23 C -0.092 4.092 24 C -0.230 4.230 25 C -0.148 4.148 26 C -0.152 4.152 27 H 0.264 0.736 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.261 0.739 35 H 0.138 0.862 36 H 0.144 0.856 37 H 0.113 0.887 38 H 0.230 0.770 39 H -0.237 1.237 40 H -0.190 1.190 41 H 0.163 0.837 42 H 0.168 0.832 43 H 0.172 0.828 44 H 0.173 0.827 45 H 0.104 0.896 46 H 0.120 0.880 47 H 0.075 0.925 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.127 1.512 -7.807 10.039 hybrid contribution -0.567 -1.066 -0.198 1.224 sum 5.560 0.446 -8.005 9.757 Atomic orbital electron populations 1.25855 0.96996 0.97301 0.98726 1.23275 0.95208 1.02922 1.02276 1.19327 0.84060 0.89808 0.97573 1.87972 1.22700 1.45744 1.75692 1.22309 0.79422 0.96965 0.98016 0.89060 1.21972 0.95422 1.01332 0.98881 1.21792 0.95055 0.96136 1.02786 1.21013 0.79214 0.96129 0.99695 0.92376 1.45701 1.07670 1.73438 1.09021 1.20589 0.89991 0.75983 0.83713 1.90785 1.68753 1.49170 1.36252 1.22715 0.91534 1.06244 0.83585 1.86195 1.20887 1.87464 1.28138 1.19076 0.82008 0.96302 0.94273 1.19703 0.94941 1.08992 0.92978 1.25216 1.00242 0.89468 1.04143 1.86651 1.37781 1.22033 1.89243 0.94062 0.77284 0.87145 0.72862 1.21182 0.90956 0.97540 1.00917 1.21404 1.01056 1.02346 0.92421 1.21406 0.94677 0.95174 0.97933 1.21600 0.94449 1.07954 0.98965 1.21696 0.94363 1.01690 0.97044 1.21519 0.95474 0.94730 1.03431 0.73593 0.89756 0.88776 0.90883 0.93056 0.93462 0.88985 0.73943 0.86213 0.85629 0.88673 0.77027 1.23730 1.19008 0.83710 0.83205 0.82791 0.82684 0.89565 0.88050 0.92520 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.56 19.25 74.32 1.43 0.87 16 2 C -0.24 -1.35 13.73 31.13 0.43 -0.92 16 3 C 0.17 0.20 6.22 70.18 0.44 0.64 16 4 O -0.40 -1.85 9.95 -148.98 -1.48 -3.33 16 5 C 0.09 -0.13 2.61 30.60 0.08 -0.05 16 6 H 0.09 -0.59 7.79 -2.39 -0.02 -0.61 16 7 C -0.14 -0.09 5.54 30.59 0.17 0.08 16 8 C -0.12 0.09 5.49 30.59 0.17 0.26 16 9 C 0.14 -0.16 2.45 44.99 0.11 -0.05 16 10 H 0.06 0.38 7.58 -2.38 -0.02 0.36 16 11 N -0.70 2.71 5.08 -442.54 -2.25 0.47 16 12 C 0.51 2.23 7.87 87.66 0.69 2.92 16 13 O -0.57 -9.82 16.16 16.00 0.26 -9.56 16 14 C 0.04 -0.06 5.22 71.24 0.37 0.32 16 15 O -0.31 -2.60 9.00 -73.47 -0.66 -3.26 16 16 C 0.13 0.60 6.66 22.51 0.15 0.75 16 17 C -0.17 -0.77 5.27 -19.77 -0.10 -0.87 16 18 C -0.08 -0.60 2.38 71.24 0.17 -0.43 16 19 O -0.55 -6.23 12.88 -148.98 -1.92 -8.14 16 20 Si 0.78 1.54 30.25 68.60 2.07 3.62 16 21 C -0.09 0.00 8.66 22.25 0.19 0.20 16 22 C -0.15 0.44 10.04 22.28 0.22 0.66 16 23 C -0.07 0.28 10.04 22.25 0.22 0.51 16 24 C -0.21 0.41 9.04 22.37 0.20 0.61 16 25 C -0.11 0.75 5.39 30.58 0.16 0.91 16 26 C -0.11 0.29 5.57 30.58 0.17 0.46 16 27 H 0.25 -1.07 7.80 -4.43 -0.03 -1.11 16 28 H 0.08 -0.14 7.87 -2.39 -0.02 -0.16 16 29 H 0.09 -0.33 8.08 -2.39 -0.02 -0.35 16 30 H 0.07 -0.01 7.87 -2.39 -0.02 -0.03 16 31 H 0.05 0.29 8.14 -2.38 -0.02 0.27 16 32 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.09 -0.52 8.14 -2.39 -0.02 -0.54 16 34 H 0.42 -5.26 8.60 -92.71 -0.80 -6.05 16 35 H 0.12 -0.89 7.65 -2.39 -0.02 -0.91 16 36 H 0.13 -1.07 7.67 -2.39 -0.02 -1.09 16 37 H 0.10 1.01 7.83 -2.38 -0.02 1.00 16 38 H 0.38 1.43 8.70 -74.06 -0.64 0.79 16 39 H -0.31 -3.20 7.11 99.48 0.71 -2.49 16 40 H -0.26 -0.65 6.69 99.48 0.67 0.02 16 41 H 0.15 -0.45 4.86 -2.91 -0.01 -0.46 16 42 H 0.15 -1.12 8.06 -2.91 -0.02 -1.15 16 43 H 0.15 -1.43 8.06 -2.91 -0.02 -1.45 16 44 H 0.16 -1.29 6.30 -2.91 -0.02 -1.31 16 45 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 46 H 0.10 -1.20 8.14 -2.39 -0.02 -1.22 16 47 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 48 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 Total: 0.00 -31.41 400.26 0.83 -30.58 By element: Atomic # 1 Polarization: -16.76 SS G_CDS: -0.47 Total: -17.23 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 5.28 Total: 6.86 kcal Atomic # 7 Polarization: 2.71 SS G_CDS: -2.25 Total: 0.47 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -3.80 Total: -24.30 kcal Atomic # 14 Polarization: 1.54 SS G_CDS: 2.07 Total: 3.62 kcal Total: -31.41 0.83 -30.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14940684_2989392.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.935 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds