Wall clock time and date at job start Sun Mar 7 2021 02:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 O 1.42901 * 109.47071 * 137.39626 * 3 2 1 5 5 C 1.42903 * 114.00157 * 179.97438 * 4 3 2 6 6 H 1.08992 * 109.47309 * 330.00452 * 5 4 3 7 7 C 1.53002 * 109.46797 * 90.00287 * 5 4 3 8 8 C 1.52997 * 109.46978 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.47164 * 299.99874 * 8 7 5 10 10 H 1.08998 * 109.46505 * 299.99708 * 9 8 7 11 11 N 1.46500 * 109.47249 * 180.02562 * 9 8 7 12 12 C 1.34770 * 120.00256 * 84.99846 * 11 9 8 13 13 O 1.21283 * 120.00026 * 359.97438 * 12 11 9 14 14 C 1.50701 * 119.99922 * 180.02562 * 12 11 9 15 15 O 1.42903 * 109.47057 * 179.97438 * 14 12 11 16 16 C 1.35904 * 117.00029 * 179.97438 * 15 14 12 17 17 C 1.38728 * 120.05320 * 359.73214 * 16 15 14 18 18 C 1.38154 * 119.93940 * 179.74202 * 17 16 15 19 19 C 1.38262 * 120.05244 * 0.50526 * 18 17 16 20 20 C 1.50703 * 119.94059 * 179.74543 * 19 18 17 21 21 O 1.42903 * 109.47357 * 120.01959 * 20 19 18 22 22 Si 1.86309 * 109.47062 * 0.02562 * 20 19 18 23 23 C 1.38262 * 120.11720 * 359.76910 * 19 18 17 24 24 C 1.38141 * 120.05491 * 359.97438 * 23 19 18 25 25 C 1.52997 * 109.47127 * 59.99836 * 9 8 7 26 26 C 1.52996 * 109.47126 * 209.99807 * 5 4 3 27 27 H 4.38440 * 5.44438 * 180.02562 * 4 1 2 28 28 H 1.08997 * 109.47785 * 17.39842 * 3 2 1 29 29 H 1.09006 * 109.47148 * 257.39130 * 3 2 1 30 30 H 1.09002 * 109.47097 * 299.99876 * 7 5 4 31 31 H 1.09001 * 109.47142 * 59.99841 * 7 5 4 32 32 H 1.09001 * 109.47375 * 59.99908 * 8 7 5 33 33 H 1.09000 * 109.47140 * 179.97438 * 8 7 5 34 34 H 0.97005 * 119.99374 * 264.99912 * 11 9 8 35 35 H 1.08991 * 109.47241 * 299.99575 * 14 12 11 36 36 H 1.09000 * 109.47273 * 60.00364 * 14 12 11 37 37 H 1.07997 * 120.03016 * 359.97438 * 17 16 15 38 38 H 1.08001 * 119.96852 * 180.23005 * 18 17 16 39 39 H 1.09000 * 109.47371 * 240.02144 * 20 19 18 40 40 H 0.96702 * 114.00177 * 300.00979 * 21 20 19 41 41 H 1.48503 * 109.99866 * 179.97438 * 22 20 19 42 42 H 1.48501 * 109.99796 * 301.31943 * 22 20 19 43 43 H 1.07994 * 119.97418 * 179.97438 * 23 19 18 44 44 H 1.07996 * 120.03109 * 179.97438 * 24 23 19 45 45 H 1.09002 * 109.47153 * 180.02562 * 25 9 8 46 46 H 1.09001 * 109.46832 * 60.00321 * 25 9 8 47 47 H 1.09004 * 109.47368 * 60.00346 * 26 5 4 48 48 H 1.09001 * 109.47372 * 300.00501 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1218 0.9925 -0.9120 5 6 4.5463 1.0767 -0.9880 6 1 4.9787 0.7930 -0.0286 7 6 5.0557 0.1301 -2.0768 8 6 6.5809 0.2197 -2.1578 9 6 6.9903 1.6544 -2.4969 10 1 6.5582 1.9382 -3.4565 11 7 8.4507 1.7400 -2.5750 12 6 9.0837 1.4254 -3.7224 13 8 8.4445 1.0710 -4.6902 14 6 10.5861 1.5130 -3.8025 15 8 11.0164 1.1318 -5.1108 16 6 12.3536 1.1565 -5.3522 17 6 13.2330 1.5452 -4.3521 18 6 14.5922 1.5644 -4.5984 19 6 15.0755 1.2067 -5.8435 20 6 16.5583 1.2340 -6.1111 21 8 17.0007 -0.0749 -6.4760 22 14 17.4564 1.7874 -4.5754 23 6 14.2006 0.8244 -6.8436 24 6 12.8410 0.7984 -6.6008 25 6 6.4808 2.6010 -1.4082 26 6 4.9551 2.5114 -1.3275 27 1 -1.0502 -0.0001 0.0004 28 1 3.0098 -0.9798 -0.3073 29 1 3.0092 0.2252 1.0029 30 1 4.7644 -0.8921 -1.8350 31 1 4.6232 0.4138 -3.0363 32 1 7.0130 -0.0643 -1.1982 33 1 6.9438 -0.4550 -2.9331 34 1 8.9619 2.0232 -1.8008 35 1 10.9017 2.5363 -3.5998 36 1 11.0289 0.8433 -3.0653 37 1 12.8556 1.8289 -3.3808 38 1 15.2776 1.8633 -3.8190 39 1 16.7679 1.9284 -6.9247 40 1 16.8455 -0.7460 -5.7973 41 1 18.9198 1.8179 -4.8261 42 1 16.9822 3.1341 -4.1672 43 1 14.5806 0.5459 -7.8154 44 1 12.1580 0.5002 -7.3824 45 1 6.7721 3.6231 -1.6500 46 1 6.9130 2.3170 -0.4486 47 1 4.5922 3.1858 -0.5519 48 1 4.5226 2.7951 -2.2870 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14940684_2989410.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:50:00 Heat of formation + Delta-G solvation = -66.356610 kcal Electronic energy + Delta-G solvation = -28768.353642 eV Core-core repulsion = 24563.929489 eV Total energy + Delta-G solvation = -4204.424153 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.166 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.62484 -40.95256 -40.00472 -39.01889 -37.86029 -37.09238 -35.10170 -33.96731 -32.41996 -31.88304 -31.73423 -30.67687 -28.86692 -27.57402 -26.18375 -24.17416 -23.83541 -23.16725 -22.29556 -21.61604 -21.08258 -19.50013 -19.37990 -18.48521 -18.08685 -17.89667 -17.43361 -17.25404 -16.88536 -16.61354 -16.42985 -16.20759 -15.92698 -15.63596 -15.55508 -15.11881 -14.97715 -14.81108 -14.63633 -14.32546 -14.29471 -13.83252 -13.74248 -13.54313 -13.48509 -13.41322 -13.23458 -12.66898 -12.37934 -12.23845 -12.17649 -12.06178 -12.04685 -11.86727 -11.72167 -11.70995 -11.34134 -11.28873 -10.97856 -10.45675 -10.40034 -10.14540 -10.04271 -9.22174 -4.98044 0.27680 0.30920 1.35113 1.44368 1.45167 1.52289 1.65490 1.78322 1.99867 2.57970 2.66097 2.88801 3.49509 3.53109 3.56868 3.62251 3.70770 3.74965 3.83485 3.96239 4.01699 4.04115 4.06756 4.12820 4.15721 4.23800 4.30051 4.31163 4.36929 4.42920 4.44197 4.46689 4.51063 4.60950 4.67419 4.80487 4.91732 4.97277 5.01370 5.03005 5.10681 5.13753 5.15977 5.23993 5.25547 5.27673 5.44385 5.50062 5.70069 6.19904 6.27298 6.49016 6.56456 6.80303 7.15105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.237 4.237 3 C 0.168 3.832 4 O -0.401 6.401 5 C 0.089 3.911 6 H 0.091 0.909 7 C -0.138 4.138 8 C -0.119 4.119 9 C 0.144 3.856 10 H 0.060 0.940 11 N -0.703 5.703 12 C 0.512 3.488 13 O -0.574 6.574 14 C 0.036 3.964 15 O -0.321 6.321 16 C 0.121 3.879 17 C -0.199 4.199 18 C -0.076 4.076 19 C -0.161 4.161 20 C -0.075 4.075 21 O -0.559 6.559 22 Si 0.784 3.216 23 C -0.061 4.061 24 C -0.167 4.167 25 C -0.110 4.110 26 C -0.114 4.114 27 H 0.248 0.752 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.048 0.952 34 H 0.423 0.577 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.167 0.833 38 H 0.154 0.846 39 H 0.102 0.898 40 H 0.395 0.605 41 H -0.304 1.304 42 H -0.280 1.280 43 H 0.131 0.869 44 H 0.124 0.876 45 H 0.086 0.914 46 H 0.101 0.899 47 H 0.085 0.915 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.320 0.480 10.979 11.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.237 4.237 3 C 0.092 3.908 4 O -0.321 6.321 5 C 0.032 3.968 6 H 0.109 0.891 7 C -0.176 4.176 8 C -0.158 4.158 9 C 0.039 3.961 10 H 0.078 0.922 11 N -0.358 5.358 12 C 0.298 3.702 13 O -0.453 6.453 14 C -0.041 4.041 15 O -0.235 6.235 16 C 0.075 3.925 17 C -0.217 4.217 18 C -0.093 4.093 19 C -0.162 4.162 20 C -0.184 4.184 21 O -0.367 6.367 22 Si 0.690 3.310 23 C -0.079 4.079 24 C -0.186 4.186 25 C -0.148 4.148 26 C -0.152 4.152 27 H 0.264 0.736 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.066 0.934 34 H 0.262 0.738 35 H 0.143 0.857 36 H 0.148 0.852 37 H 0.184 0.816 38 H 0.171 0.829 39 H 0.119 0.881 40 H 0.245 0.755 41 H -0.232 1.232 42 H -0.207 1.207 43 H 0.149 0.851 44 H 0.142 0.858 45 H 0.105 0.895 46 H 0.119 0.881 47 H 0.103 0.897 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.285 1.197 9.871 10.203 hybrid contribution -0.409 0.003 -0.791 0.890 sum 1.876 1.200 9.080 9.349 Atomic orbital electron populations 1.25866 0.97010 0.97908 0.98157 1.23279 0.95217 1.02640 1.02525 1.19325 0.84043 0.92970 0.94414 1.87971 1.22774 1.57545 1.63852 1.22318 0.79389 0.96103 0.98958 0.89132 1.21973 0.95510 1.00454 0.99695 1.21799 0.94975 0.96312 1.02724 1.21013 0.79266 0.95857 0.99932 0.92195 1.45703 1.07647 1.68476 1.13929 1.20601 0.90016 0.76601 0.83008 1.90775 1.68855 1.47481 1.38163 1.22770 0.91404 1.05073 0.84875 1.86134 1.20775 1.83433 1.33120 1.19212 0.81973 0.96429 0.94843 1.21513 0.93456 1.06403 1.00310 1.21078 0.95400 0.96953 0.95876 1.20360 0.96313 1.04630 0.94871 1.25208 0.93513 0.88972 1.10721 1.86464 1.83920 1.18229 1.48103 0.93747 0.75087 0.82052 0.80160 1.20886 0.91297 0.96202 0.99551 1.20613 0.96034 1.05993 0.95970 1.21712 0.94257 0.99831 0.99000 1.21537 0.95560 0.95170 1.02905 0.73601 0.89747 0.88801 0.90977 0.92974 0.89016 0.93358 0.73845 0.85657 0.85238 0.81571 0.82864 0.88073 0.75523 1.23242 1.20688 0.85069 0.85768 0.89495 0.88096 0.89687 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.47 19.25 74.32 1.43 0.97 16 2 C -0.24 -1.20 13.73 31.12 0.43 -0.77 16 3 C 0.17 0.08 6.22 70.18 0.44 0.52 16 4 O -0.40 -1.51 9.95 -148.98 -1.48 -2.99 16 5 C 0.09 -0.22 2.61 30.59 0.08 -0.14 16 6 H 0.09 -0.67 7.79 -2.39 -0.02 -0.69 16 7 C -0.14 0.09 5.54 30.59 0.17 0.25 16 8 C -0.12 0.28 5.49 30.60 0.17 0.45 16 9 C 0.14 -0.43 2.45 44.99 0.11 -0.32 16 10 H 0.06 0.26 7.58 -2.39 -0.02 0.24 16 11 N -0.70 4.31 5.08 -442.53 -2.25 2.06 16 12 C 0.51 0.83 7.87 87.66 0.69 1.52 16 13 O -0.57 -8.17 16.16 16.00 0.26 -7.91 16 14 C 0.04 -0.17 5.22 71.24 0.37 0.21 16 15 O -0.32 -1.72 9.67 -73.43 -0.71 -2.43 16 16 C 0.12 0.35 6.69 22.51 0.15 0.50 16 17 C -0.20 0.70 9.04 22.37 0.20 0.90 16 18 C -0.08 0.27 8.66 22.26 0.19 0.46 16 19 C -0.16 0.02 5.39 -19.85 -0.11 -0.09 16 20 C -0.07 0.05 2.82 71.24 0.20 0.26 16 21 O -0.56 -0.26 12.77 -148.98 -1.90 -2.16 16 22 Si 0.78 -2.93 29.78 68.60 2.04 -0.89 16 23 C -0.06 -0.18 9.60 22.25 0.21 0.04 16 24 C -0.17 -0.81 9.99 22.37 0.22 -0.59 16 25 C -0.11 0.91 5.39 30.61 0.17 1.08 16 26 C -0.11 0.43 5.58 30.61 0.17 0.60 16 27 H 0.25 -1.20 7.80 -4.41 -0.03 -1.23 16 28 H 0.08 -0.21 7.87 -2.39 -0.02 -0.23 16 29 H 0.09 -0.39 8.09 -2.38 -0.02 -0.41 16 30 H 0.07 -0.09 7.87 -2.39 -0.02 -0.11 16 31 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 33 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.42 -6.22 8.60 -92.70 -0.80 -7.02 16 35 H 0.13 -1.38 7.65 -2.39 -0.02 -1.40 16 36 H 0.13 -1.51 7.68 -2.39 -0.02 -1.53 16 37 H 0.17 -1.88 6.30 -2.91 -0.02 -1.90 16 38 H 0.15 -1.36 4.87 -2.91 -0.01 -1.38 16 39 H 0.10 0.11 7.96 -2.39 -0.02 0.09 16 40 H 0.39 -3.06 8.70 -74.06 -0.64 -3.71 16 41 H -0.30 -1.37 7.11 99.48 0.71 -0.66 16 42 H -0.28 0.03 7.11 99.48 0.71 0.73 16 43 H 0.13 0.31 8.06 -2.91 -0.02 0.28 16 44 H 0.12 0.71 8.06 -2.91 -0.02 0.69 16 45 H 0.09 -0.80 8.14 -2.39 -0.02 -0.81 16 46 H 0.10 -1.33 8.14 -2.39 -0.02 -1.35 16 47 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 48 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 Total: 0.00 -30.44 401.03 0.83 -29.61 By element: Atomic # 1 Polarization: -20.70 SS G_CDS: -0.43 Total: -21.13 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 5.30 Total: 5.84 kcal Atomic # 7 Polarization: 4.31 SS G_CDS: -2.25 Total: 2.06 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -3.84 Total: -15.49 kcal Atomic # 14 Polarization: -2.93 SS G_CDS: 2.04 Total: -0.89 kcal Total: -30.44 0.83 -29.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14940684_2989410.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.750 kcal (2) G-P(sol) polarization free energy of solvation -30.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds