Wall clock time and date at job start Sun Mar 7 2021 02:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42902 * 109.47326 * 354.84652 * 3 2 1 5 5 C 1.42900 * 113.99821 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47130 * 330.00032 * 5 4 3 7 7 C 1.53006 * 109.46976 * 89.99801 * 5 4 3 8 8 C 1.52997 * 109.47127 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47060 * 300.00449 * 8 7 5 10 10 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 11 11 N 1.46499 * 109.46840 * 180.02562 * 9 8 7 12 12 C 1.34782 * 120.00074 * 155.00031 * 11 9 8 13 13 O 1.21279 * 119.99782 * 359.97438 * 12 11 9 14 14 C 1.50703 * 120.00040 * 179.97438 * 12 11 9 15 15 O 1.42894 * 109.46810 * 179.97438 * 14 12 11 16 16 C 1.35999 * 116.99606 * 179.97438 * 15 14 12 17 17 C 1.39155 * 120.07126 * 179.72857 * 16 15 14 18 18 O 1.35994 * 120.07256 * 359.97438 * 17 16 15 19 19 C 1.42902 * 117.00091 * 180.02562 * 18 17 16 20 20 C 1.38563 * 119.85256 * 179.72597 * 17 16 15 21 21 C 1.38241 * 119.99887 * 0.55100 * 20 17 16 22 22 C 1.50703 * 119.92581 * 179.70237 * 21 20 17 23 23 O 1.42900 * 109.46999 * 65.02260 * 22 21 20 24 24 Si 1.86302 * 109.47094 * 185.01773 * 22 21 20 25 25 C 1.38248 * 120.14736 * 359.71919 * 21 20 17 26 26 C 1.38248 * 120.14533 * 0.02562 * 25 21 20 27 27 C 1.52996 * 109.47328 * 60.00126 * 9 8 7 28 28 C 1.52997 * 109.47084 * 209.99741 * 5 4 3 29 29 H 4.38450 * 5.44438 * 179.97438 * 4 1 2 30 30 H 1.08996 * 109.47076 * 234.83806 * 3 2 1 31 31 H 1.09001 * 109.46933 * 114.84625 * 3 2 1 32 32 H 1.08998 * 109.46505 * 59.99598 * 7 5 4 33 33 H 1.08996 * 109.46884 * 300.00479 * 7 5 4 34 34 H 1.09002 * 109.47153 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.46832 * 60.00321 * 8 7 5 36 36 H 0.97002 * 120.00427 * 334.99530 * 11 9 8 37 37 H 1.09002 * 109.47083 * 299.99967 * 14 12 11 38 38 H 1.09003 * 109.46851 * 59.99654 * 14 12 11 39 39 H 1.09004 * 109.47127 * 300.00295 * 19 18 17 40 40 H 1.09002 * 109.47153 * 59.99988 * 19 18 17 41 41 H 1.09000 * 109.47269 * 180.02562 * 19 18 17 42 42 H 1.08002 * 120.00298 * 180.27216 * 20 17 16 43 43 H 1.08996 * 109.47565 * 305.02120 * 22 21 20 44 44 H 0.96700 * 114.00458 * 59.99552 * 23 22 21 45 45 H 1.48500 * 109.99997 * 180.02562 * 24 22 21 46 46 H 1.48500 * 110.00217 * 301.32415 * 24 22 21 47 47 H 1.07999 * 119.92665 * 180.02562 * 25 21 20 48 48 H 1.07994 * 119.99738 * 180.02562 * 26 25 21 49 49 H 1.08992 * 109.47554 * 59.99639 * 27 9 8 50 50 H 1.09004 * 109.47108 * 179.97438 * 27 9 8 51 51 H 1.09002 * 109.47045 * 60.00217 * 28 5 4 52 52 H 1.09001 * 109.47375 * 300.00142 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1230 -1.3410 0.1210 5 6 4.5476 -1.4527 0.1306 6 1 4.9795 -0.6436 -0.4586 7 6 5.0566 -1.3627 1.5707 8 6 6.5818 -1.4829 1.5810 9 6 6.9914 -2.8282 0.9783 10 1 6.5592 -3.6370 1.5676 11 7 8.4518 -2.9436 0.9888 12 6 9.0317 -4.1602 0.9966 13 8 8.3445 -5.1595 0.9954 14 6 10.5340 -4.2789 1.0067 15 8 10.9027 -5.6594 1.0143 16 6 12.2327 -5.9432 1.0234 17 6 12.6633 -7.2663 1.0368 18 8 11.7551 -8.2785 1.0413 19 6 12.2694 -9.6117 1.0557 20 6 14.0195 -7.5503 1.0403 21 6 14.9414 -6.5202 1.0421 22 6 16.4160 -6.8309 1.0527 23 8 16.7725 -7.4907 -0.1637 24 14 17.3835 -5.2462 1.2061 25 6 14.5136 -5.2056 1.0344 26 6 13.1619 -4.9154 1.0256 27 6 6.4825 -2.9181 -0.4617 28 6 4.9577 -2.7978 -0.4722 29 1 -1.0498 -0.0004 0.0002 30 1 3.0091 0.5926 0.8401 31 1 3.0091 0.4326 -0.9326 32 1 4.6246 -2.1716 2.1598 33 1 4.7643 -0.4045 2.0001 34 1 6.9443 -1.4193 2.6070 35 1 7.0140 -0.6741 0.9917 36 1 9.0015 -2.1443 0.9901 37 1 10.9425 -3.7981 0.1178 38 1 10.9308 -3.7922 1.8977 39 1 12.8841 -9.7736 0.1702 40 1 12.8752 -9.7578 1.9501 41 1 11.4415 -10.3206 1.0575 42 1 14.3564 -8.5764 1.0463 43 1 16.6446 -7.4795 1.8983 44 1 16.5962 -6.9706 -0.9597 45 1 18.8393 -5.5390 1.2171 46 1 17.0566 -4.3400 0.0760 47 1 15.2369 -4.4036 1.0354 48 1 12.8304 -3.8876 1.0192 49 1 6.9146 -2.1094 -1.0510 50 1 6.7747 -3.8764 -0.8912 51 1 4.5952 -2.8618 -1.4981 52 1 4.5259 -3.6068 0.1170 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14940684_60476.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:51:07 Heat of formation + Delta-G solvation = -98.600614 kcal Electronic energy + Delta-G solvation = -33409.575899 eV Core-core repulsion = 28729.533730 eV Total energy + Delta-G solvation = -4680.042169 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.181 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.83436 -41.17391 -40.12787 -39.30696 -38.93447 -37.84525 -37.00881 -35.09103 -33.95793 -32.09560 -31.88682 -31.48736 -30.59663 -28.88605 -28.41824 -27.54730 -26.18044 -23.93462 -23.75313 -23.04195 -22.47136 -21.60804 -21.07214 -19.79689 -19.37324 -18.66004 -18.36191 -18.00820 -17.87742 -17.50983 -17.25529 -17.07148 -16.69483 -16.51039 -16.32543 -16.13303 -15.86939 -15.80271 -15.55979 -15.40275 -14.96331 -14.85339 -14.69121 -14.34708 -14.24811 -13.78498 -13.75579 -13.65248 -13.51666 -13.41963 -13.23842 -12.67081 -12.59055 -12.54775 -12.25058 -12.18721 -12.14140 -12.13383 -12.06447 -11.98933 -11.65246 -11.61791 -11.33318 -11.28068 -10.95703 -10.60791 -10.43252 -10.13567 -9.78559 -8.92026 -4.87992 0.17031 0.28139 1.33694 1.45227 1.47533 1.52994 1.63475 1.78980 2.00002 2.30938 2.55666 2.56844 2.89483 3.41311 3.51503 3.52085 3.65646 3.66973 3.68326 3.86379 3.91606 4.03414 4.05520 4.08625 4.14463 4.14895 4.16041 4.23714 4.28435 4.30051 4.31334 4.35928 4.36190 4.44934 4.47973 4.57260 4.61906 4.65273 4.65959 4.80434 4.92348 5.01162 5.02080 5.03535 5.10581 5.12836 5.13503 5.24610 5.28817 5.37322 5.45295 5.59920 5.97365 6.21250 6.43758 6.49683 6.55842 6.57149 7.17804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.236 4.236 3 C 0.168 3.832 4 O -0.403 6.403 5 C 0.090 3.910 6 H 0.090 0.910 7 C -0.138 4.138 8 C -0.111 4.111 9 C 0.144 3.856 10 H 0.059 0.941 11 N -0.703 5.703 12 C 0.511 3.489 13 O -0.574 6.574 14 C 0.034 3.966 15 O -0.315 6.315 16 C 0.085 3.915 17 C 0.076 3.924 18 O -0.336 6.336 19 C 0.020 3.980 20 C -0.152 4.152 21 C -0.116 4.116 22 C -0.086 4.086 23 O -0.551 6.551 24 Si 0.777 3.223 25 C -0.111 4.111 26 C -0.159 4.159 27 C -0.118 4.118 28 C -0.114 4.114 29 H 0.247 0.753 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.423 0.577 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.110 0.890 42 H 0.141 0.859 43 H 0.121 0.879 44 H 0.386 0.614 45 H -0.307 1.307 46 H -0.273 1.273 47 H 0.158 0.842 48 H 0.177 0.823 49 H 0.091 0.909 50 H 0.049 0.951 51 H 0.071 0.929 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.907 10.123 1.471 10.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.236 4.236 3 C 0.093 3.907 4 O -0.324 6.324 5 C 0.033 3.967 6 H 0.108 0.892 7 C -0.176 4.176 8 C -0.149 4.149 9 C 0.040 3.960 10 H 0.078 0.922 11 N -0.358 5.358 12 C 0.297 3.703 13 O -0.452 6.452 14 C -0.043 4.043 15 O -0.229 6.229 16 C 0.040 3.960 17 C 0.031 3.969 18 O -0.250 6.250 19 C -0.074 4.074 20 C -0.171 4.171 21 C -0.116 4.116 22 C -0.194 4.194 23 O -0.359 6.359 24 Si 0.682 3.318 25 C -0.129 4.129 26 C -0.177 4.177 27 C -0.157 4.157 28 C -0.152 4.152 29 H 0.263 0.737 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.119 0.881 36 H 0.262 0.738 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.128 0.872 42 H 0.158 0.842 43 H 0.139 0.861 44 H 0.235 0.765 45 H -0.236 1.236 46 H -0.199 1.199 47 H 0.175 0.825 48 H 0.194 0.806 49 H 0.110 0.890 50 H 0.068 0.932 51 H 0.089 0.911 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.684 9.175 1.539 10.006 hybrid contribution -0.188 -0.720 -1.201 1.413 sum 3.496 8.455 0.338 9.156 Atomic orbital electron populations 1.25854 0.97024 0.96415 0.99807 1.23310 0.95263 1.03272 1.01748 1.19346 0.83941 0.84577 1.02872 1.87976 1.22748 1.26808 1.94839 1.22292 0.79443 0.98396 0.96572 0.89162 1.21980 0.95578 1.03355 0.96696 1.21697 0.95066 0.95395 1.02739 1.21006 0.79305 0.99284 0.96445 0.92239 1.45693 1.07599 1.07680 1.74791 1.20611 0.90308 0.83693 0.75660 1.90781 1.66015 1.38419 1.49963 1.22795 0.92014 0.82420 1.07090 1.86227 1.20648 1.26747 1.89266 1.18602 0.83200 0.91560 1.02654 1.18683 0.88936 0.86607 1.02716 1.86191 1.34210 1.15494 1.89097 1.23281 1.02018 0.79990 1.02102 1.21019 0.89798 1.01255 1.05009 1.20113 0.95884 0.93235 1.02392 1.25323 0.94198 1.10182 0.89663 1.86571 1.86387 1.46531 1.16402 0.93974 0.75114 0.74624 0.88138 1.21049 0.95739 0.95810 1.00265 1.21378 0.92381 0.99158 1.04802 1.21791 0.94421 1.02609 0.96887 1.21495 0.95411 0.96718 1.01561 0.73681 0.89022 0.89125 0.92534 0.89575 0.89681 0.88144 0.73839 0.85526 0.85236 0.91967 0.91530 0.87159 0.84159 0.86090 0.76457 1.23572 1.19909 0.82476 0.80609 0.89004 0.93244 0.91064 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.49 19.25 74.32 1.43 0.94 16 2 C -0.24 -1.18 13.73 31.13 0.43 -0.76 16 3 C 0.17 0.02 6.22 70.18 0.44 0.46 16 4 O -0.40 -1.69 9.95 -148.98 -1.48 -3.18 16 5 C 0.09 -0.17 2.61 30.60 0.08 -0.09 16 6 H 0.09 -0.62 7.79 -2.39 -0.02 -0.64 16 7 C -0.14 0.56 5.54 30.60 0.17 0.73 16 8 C -0.11 0.89 5.39 30.59 0.16 1.05 16 9 C 0.14 -0.30 2.45 44.99 0.11 -0.19 16 10 H 0.06 0.32 7.58 -2.39 -0.02 0.30 16 11 N -0.70 3.58 5.08 -442.53 -2.25 1.33 16 12 C 0.51 1.64 7.87 87.66 0.69 2.33 16 13 O -0.57 -9.35 16.16 16.01 0.26 -9.09 16 14 C 0.03 -0.10 5.22 71.24 0.37 0.27 16 15 O -0.32 -2.66 9.45 -67.13 -0.63 -3.29 16 16 C 0.09 0.46 6.70 22.57 0.15 0.61 16 17 C 0.08 0.61 6.70 22.57 0.15 0.76 16 18 O -0.34 -3.84 10.28 -79.62 -0.82 -4.66 16 19 C 0.02 0.06 9.81 113.37 1.11 1.17 16 20 C -0.15 -0.57 8.67 22.35 0.19 -0.37 16 21 C -0.12 0.02 5.35 -19.86 -0.11 -0.09 16 22 C -0.09 0.13 2.80 71.24 0.20 0.33 16 23 O -0.55 -1.11 12.83 -148.98 -1.91 -3.03 16 24 Si 0.78 -3.34 29.88 68.60 2.05 -1.29 16 25 C -0.11 0.40 8.66 22.27 0.19 0.59 16 26 C -0.16 0.48 9.04 22.35 0.20 0.68 16 27 C -0.12 0.12 5.49 30.58 0.17 0.29 16 28 C -0.11 -0.11 5.57 30.58 0.17 0.06 16 29 H 0.25 -1.14 7.80 -4.43 -0.03 -1.17 16 30 H 0.09 -0.39 7.87 -2.39 -0.02 -0.41 16 31 H 0.09 -0.36 8.08 -2.39 -0.02 -0.38 16 32 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.09 -0.56 7.87 -2.39 -0.02 -0.57 16 34 H 0.08 -0.75 8.14 -2.39 -0.02 -0.77 16 35 H 0.10 -1.30 8.14 -2.39 -0.02 -1.32 16 36 H 0.42 -5.89 8.60 -92.71 -0.80 -6.69 16 37 H 0.13 -1.28 7.66 -2.39 -0.02 -1.30 16 38 H 0.13 -1.35 7.66 -2.39 -0.02 -1.37 16 39 H 0.06 0.05 7.65 -2.38 -0.02 0.03 16 40 H 0.07 0.00 7.68 -2.39 -0.02 -0.02 16 41 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 42 H 0.14 0.33 6.30 -2.91 -0.02 0.31 16 43 H 0.12 -0.31 7.96 -2.39 -0.02 -0.33 16 44 H 0.39 -1.41 8.70 -74.06 -0.64 -2.05 16 45 H -0.31 -1.28 7.11 99.48 0.71 -0.57 16 46 H -0.27 0.55 7.00 99.48 0.70 1.24 16 47 H 0.16 -1.41 4.83 -2.91 -0.01 -1.42 16 48 H 0.18 -2.01 6.30 -2.91 -0.02 -2.03 16 49 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 50 H 0.05 0.24 8.14 -2.38 -0.02 0.22 16 51 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 52 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 Total: 0.00 -34.60 430.29 1.07 -33.53 By element: Atomic # 1 Polarization: -18.65 SS G_CDS: -0.46 Total: -19.12 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 6.32 Total: 8.78 kcal Atomic # 7 Polarization: 3.58 SS G_CDS: -2.25 Total: 1.33 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -4.59 Total: -23.24 kcal Atomic # 14 Polarization: -3.34 SS G_CDS: 2.05 Total: -1.29 kcal Total: -34.60 1.07 -33.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14940684_60476.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.071 kcal (2) G-P(sol) polarization free energy of solvation -34.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds