Wall clock time and date at job start Sun Mar 7 2021 02:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 O 1.42895 * 109.47463 * 100.76899 * 3 2 1 5 5 C 1.42899 * 114.00426 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.46863 * 329.99231 * 5 4 3 7 7 C 1.52992 * 109.47526 * 89.99842 * 5 4 3 8 8 C 1.53004 * 109.47249 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47135 * 300.00118 * 8 7 5 10 10 H 1.09004 * 109.47117 * 299.99689 * 9 8 7 11 11 N 1.46499 * 109.47028 * 180.02562 * 9 8 7 12 12 C 1.34777 * 120.00383 * 84.99794 * 11 9 8 13 13 O 1.21695 * 119.99788 * 359.97438 * 12 11 9 14 14 C 1.46581 * 120.00224 * 179.97438 * 12 11 9 15 15 C 1.36639 * 125.45895 * 179.97438 * 14 12 11 16 16 C 1.37471 * 113.29742 * 180.02562 * 15 14 12 17 17 C 1.50705 * 122.44699 * 179.97438 * 16 15 14 18 18 C 1.33810 * 115.10151 * 359.97438 * 16 15 14 19 19 C 1.50705 * 124.52270 * 179.97438 * 18 16 15 20 20 O 1.42901 * 109.47044 * 246.71985 * 19 18 16 21 21 Si 1.86304 * 109.47102 * 126.72359 * 19 18 16 22 22 S 1.70623 * 110.95607 * 359.72682 * 18 16 15 23 23 C 1.52992 * 109.47148 * 59.99821 * 9 8 7 24 24 C 1.53002 * 109.47474 * 299.99803 * 23 9 8 25 25 H 4.38448 * 5.44495 * 180.02562 * 4 1 2 26 26 H 1.09007 * 109.47289 * 220.76950 * 3 2 1 27 27 H 1.09004 * 109.47515 * 340.76787 * 3 2 1 28 28 H 1.08998 * 109.47154 * 300.00130 * 7 5 4 29 29 H 1.09004 * 109.47219 * 60.00214 * 7 5 4 30 30 H 1.09004 * 109.46892 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.47047 * 60.00176 * 8 7 5 32 32 H 0.97003 * 119.99930 * 264.99867 * 11 9 8 33 33 H 1.08003 * 123.35219 * 0.02599 * 15 14 12 34 34 H 1.08998 * 109.47083 * 95.15007 * 17 16 15 35 35 H 1.09004 * 109.46973 * 215.14080 * 17 16 15 36 36 H 1.08994 * 109.47650 * 335.14476 * 17 16 15 37 37 H 1.08993 * 109.47396 * 6.72417 * 19 18 16 38 38 H 0.96696 * 113.99778 * 300.00037 * 20 19 18 39 39 H 1.48497 * 110.00200 * 180.02562 * 21 19 18 40 40 H 1.48503 * 110.00040 * 301.31653 * 21 19 18 41 41 H 1.08998 * 109.47154 * 180.02562 * 23 9 8 42 42 H 1.09004 * 109.47219 * 59.99931 * 23 9 8 43 43 H 1.08993 * 109.47351 * 300.00552 * 24 23 9 44 44 H 1.08999 * 109.47324 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1222 0.2526 -1.3235 5 6 4.5468 0.2737 -1.4344 6 1 4.9793 0.6181 -0.4950 7 6 5.0553 -1.1357 -1.7437 8 6 6.5806 -1.1131 -1.8619 9 6 6.9907 -0.1640 -2.9897 10 1 6.5586 -0.5081 -3.9294 11 7 8.4511 -0.1428 -3.1032 12 6 9.0838 -1.0801 -3.8365 13 8 8.4418 -1.9443 -4.4040 14 6 10.5450 -1.0586 -3.9506 15 6 11.2978 -1.9504 -4.6611 16 6 12.6472 -1.6959 -4.5963 17 6 13.6663 -2.5517 -5.3036 18 6 12.9897 -0.6328 -3.8594 19 6 14.4053 -0.1629 -3.6444 20 8 14.7618 -0.3373 -2.2716 21 14 14.5365 1.6399 -4.0958 22 16 11.6092 0.1237 -3.2013 23 6 6.4822 1.2454 -2.6804 24 6 4.9569 1.2229 -2.5623 25 1 -1.0501 0.0002 0.0001 26 1 3.0090 0.7792 0.6711 27 1 3.0098 -0.9695 0.3385 28 1 4.7635 -1.8117 -0.9401 29 1 4.6228 -1.4800 -2.6832 30 1 6.9428 -2.1173 -2.0818 31 1 7.0127 -0.7690 -0.9223 32 1 8.9629 0.5458 -2.6506 33 1 10.8749 -2.7734 -5.2181 34 1 13.9067 -2.1072 -6.2693 35 1 14.5704 -2.6155 -4.6980 36 1 13.2592 -3.5514 -5.4550 37 1 15.0806 -0.7445 -4.2718 38 1 14.2015 0.1530 -1.6545 39 1 15.9280 2.1154 -3.8887 40 1 14.1378 1.8391 -5.5123 41 1 6.7740 1.9215 -3.4841 42 1 6.9143 1.5896 -1.7407 43 1 4.5248 0.8788 -3.5018 44 1 4.5947 2.2269 -2.3415 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14940684_6739946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:51:28 Heat of formation + Delta-G solvation = -34.683996 kcal Electronic energy + Delta-G solvation = -25880.775402 eV Core-core repulsion = 22085.559115 eV Total energy + Delta-G solvation = -3795.216287 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.123 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.25411 -40.21654 -39.59989 -37.96652 -37.53027 -35.04944 -33.91054 -32.54024 -31.96748 -30.04130 -29.92578 -27.84397 -26.54714 -24.51753 -23.91348 -23.01179 -21.68758 -21.25116 -20.22018 -19.52926 -19.20520 -17.97555 -17.85458 -17.68617 -16.96313 -16.72739 -16.41856 -16.22978 -15.88587 -15.79920 -15.33927 -15.11492 -14.95751 -14.74704 -14.44775 -14.31427 -14.20543 -13.83447 -13.60435 -13.47452 -13.32709 -13.21668 -13.07505 -12.73976 -12.46074 -12.39145 -12.25689 -12.24106 -12.01506 -11.86579 -11.70462 -11.35329 -11.27406 -11.07481 -10.83982 -10.46177 -10.17519 -9.73066 -9.51646 -5.28024 -0.67634 0.25740 0.65684 1.01101 1.24128 1.52378 1.54167 1.81616 1.87596 1.97012 2.15652 2.85839 3.21670 3.46077 3.46525 3.49160 3.63827 3.70142 3.92852 4.03267 4.03791 4.05286 4.10278 4.13787 4.23752 4.29953 4.34145 4.34458 4.40034 4.40548 4.53973 4.59581 4.68918 4.74556 4.86455 4.91184 4.92776 4.99522 5.02532 5.07646 5.17316 5.20661 5.21399 5.31839 5.39222 6.14683 6.29677 6.33445 6.63927 7.08343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.199 4.199 3 C 0.173 3.827 4 O -0.375 6.375 5 C 0.089 3.911 6 H 0.066 0.934 7 C -0.140 4.140 8 C -0.127 4.127 9 C 0.144 3.856 10 H 0.095 0.905 11 N -0.724 5.724 12 C 0.594 3.406 13 O -0.523 6.523 14 C -0.259 4.259 15 C -0.045 4.045 16 C -0.097 4.097 17 C -0.102 4.102 18 C -0.232 4.232 19 C -0.034 4.034 20 O -0.532 6.532 21 Si 0.677 3.323 22 S 0.201 5.799 23 C -0.124 4.124 24 C -0.112 4.112 25 H 0.222 0.778 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.398 0.602 33 H 0.156 0.844 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.128 0.872 38 H 0.377 0.623 39 H -0.240 1.240 40 H -0.248 1.248 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.073 4.165 3.505 5.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.199 4.199 3 C 0.098 3.902 4 O -0.295 6.295 5 C 0.032 3.968 6 H 0.084 0.916 7 C -0.178 4.178 8 C -0.166 4.166 9 C 0.040 3.960 10 H 0.113 0.887 11 N -0.375 5.375 12 C 0.380 3.620 13 O -0.400 6.400 14 C -0.379 4.379 15 C -0.078 4.078 16 C -0.110 4.110 17 C -0.161 4.161 18 C -0.351 4.351 19 C -0.146 4.146 20 O -0.337 6.337 21 Si 0.575 3.425 22 S 0.470 5.530 23 C -0.162 4.162 24 C -0.150 4.150 25 H 0.239 0.761 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.232 0.768 33 H 0.174 0.826 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.145 0.855 38 H 0.225 0.775 39 H -0.164 1.164 40 H -0.172 1.172 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.096 5.091 3.087 6.054 hybrid contribution 0.493 -1.681 -0.630 1.862 sum 1.589 3.409 2.457 4.493 Atomic orbital electron populations 1.25054 0.95983 1.00315 0.97260 1.22510 0.93899 1.01066 1.02451 1.19111 0.84831 1.00973 0.85325 1.87997 1.21261 1.92662 1.27561 1.22200 0.80363 0.95304 0.98969 0.91602 1.22009 0.95135 0.97154 1.03496 1.21886 0.95405 1.00737 0.98564 1.21104 0.78713 0.95866 1.00337 0.88697 1.45917 1.08066 1.31325 1.52173 1.16915 0.85023 0.81544 0.78554 1.90867 1.66390 1.36347 1.46378 1.24513 0.97045 1.04930 1.11430 1.20705 0.91675 0.98681 0.96776 1.18700 0.94819 0.96742 1.00751 1.20625 0.96959 0.98791 0.99718 1.24448 1.01365 1.02366 1.06925 1.24651 0.90772 1.11708 0.87503 1.86576 1.58760 1.74157 1.14249 0.95150 0.85863 0.76200 0.85248 1.82597 0.94117 1.27521 1.48776 1.21783 0.95622 0.95789 1.02993 1.21509 0.94358 0.99978 0.99196 0.76080 0.90769 0.90816 0.91186 0.90467 0.90705 0.91425 0.76768 0.82605 0.90829 0.90929 0.90739 0.85506 0.77523 1.16362 1.17160 0.90202 0.90870 0.90403 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.22 19.25 29.55 0.57 0.35 16 2 C -0.20 -0.47 13.73 -37.13 -0.51 -0.98 16 3 C 0.17 0.06 6.22 34.37 0.21 0.27 16 4 O -0.38 -0.63 9.95 -35.23 -0.35 -0.99 16 5 C 0.09 -0.08 2.61 -26.73 -0.07 -0.15 16 6 H 0.07 -0.16 7.79 -51.93 -0.40 -0.56 16 7 C -0.14 0.09 5.54 -26.73 -0.15 -0.06 16 8 C -0.13 0.11 5.49 -26.73 -0.15 -0.04 16 9 C 0.14 -0.13 2.45 -67.94 -0.17 -0.29 16 10 H 0.09 0.11 7.57 -51.93 -0.39 -0.28 16 11 N -0.72 0.62 5.07 -55.15 -0.28 0.34 16 12 C 0.59 1.31 7.75 -12.90 -0.10 1.21 16 13 O -0.52 -3.11 16.50 5.19 0.09 -3.02 16 14 C -0.26 -0.26 6.45 -36.80 -0.24 -0.50 16 15 C -0.05 -0.06 9.78 -40.44 -0.40 -0.46 16 16 C -0.10 -0.05 5.78 -106.45 -0.62 -0.67 16 17 C -0.10 0.08 9.48 36.01 0.34 0.42 16 18 C -0.23 0.10 4.83 -35.86 -0.17 -0.08 16 19 C -0.03 0.03 2.77 36.01 0.10 0.13 16 20 O -0.53 0.32 12.88 -35.23 -0.45 -0.14 16 21 Si 0.68 -1.15 32.12 -169.99 -5.46 -6.61 16 22 S 0.20 -0.42 20.81 -107.50 -2.24 -2.65 16 23 C -0.12 0.36 5.39 -26.73 -0.14 0.21 16 24 C -0.11 0.18 5.58 -26.73 -0.15 0.03 16 25 H 0.22 -0.47 7.80 -54.09 -0.42 -0.90 16 26 H 0.07 -0.11 8.09 -51.92 -0.42 -0.53 16 27 H 0.07 -0.08 7.87 -51.93 -0.41 -0.49 16 28 H 0.07 -0.06 7.87 -51.93 -0.41 -0.47 16 29 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 30 H 0.07 0.09 8.14 -51.93 -0.42 -0.33 16 31 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 32 H 0.40 -1.33 7.72 -40.82 -0.31 -1.64 16 33 H 0.16 0.20 8.06 -52.48 -0.42 -0.22 16 34 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 35 H 0.07 -0.07 7.00 -51.93 -0.36 -0.43 16 36 H 0.07 -0.10 8.10 -51.93 -0.42 -0.52 16 37 H 0.13 -0.11 6.25 -51.93 -0.32 -0.44 16 38 H 0.38 -1.67 8.70 45.56 0.40 -1.28 16 39 H -0.24 -0.24 7.11 56.52 0.40 0.16 16 40 H -0.25 -0.25 7.11 56.52 0.40 0.15 16 41 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 42 H 0.07 -0.30 8.14 -51.93 -0.42 -0.73 16 43 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 44 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 LS Contribution 382.59 15.07 5.77 5.77 Total: 0.00 -8.52 382.59 -11.05 -19.57 By element: Atomic # 1 Polarization: -5.19 SS G_CDS: -6.49 Total: -11.68 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -1.63 Total: -0.59 kcal Atomic # 7 Polarization: 0.62 SS G_CDS: -0.28 Total: 0.34 kcal Atomic # 8 Polarization: -3.43 SS G_CDS: -0.72 Total: -4.14 kcal Atomic # 14 Polarization: -1.15 SS G_CDS: -5.46 Total: -6.61 kcal Atomic # 16 Polarization: -0.42 SS G_CDS: -2.24 Total: -2.65 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -8.52 -11.05 -19.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14940684_6739946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.112 kcal (2) G-P(sol) polarization free energy of solvation -8.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds