Wall clock time and date at job start Sun Mar 7 2021 02:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 O 1.42895 * 109.47463 * 100.76899 * 3 2 1 5 5 C 1.42899 * 114.00426 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.46863 * 329.99231 * 5 4 3 7 7 C 1.52992 * 109.47526 * 89.99842 * 5 4 3 8 8 C 1.53004 * 109.47249 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47135 * 300.00118 * 8 7 5 10 10 H 1.09004 * 109.47117 * 299.99689 * 9 8 7 11 11 N 1.46499 * 109.47028 * 180.02562 * 9 8 7 12 12 C 1.34777 * 120.00383 * 84.99794 * 11 9 8 13 13 O 1.21695 * 119.99788 * 359.97438 * 12 11 9 14 14 C 1.46581 * 120.00224 * 179.97438 * 12 11 9 15 15 C 1.36639 * 125.45895 * 179.97438 * 14 12 11 16 16 C 1.37471 * 113.29742 * 180.02562 * 15 14 12 17 17 C 1.50705 * 122.44699 * 179.97438 * 16 15 14 18 18 C 1.33810 * 115.10151 * 359.97438 * 16 15 14 19 19 C 1.50705 * 124.52270 * 179.97438 * 18 16 15 20 20 O 1.42901 * 109.47044 * 246.71985 * 19 18 16 21 21 Si 1.86304 * 109.47102 * 126.72359 * 19 18 16 22 22 S 1.70623 * 110.95607 * 359.72682 * 18 16 15 23 23 C 1.52992 * 109.47148 * 59.99821 * 9 8 7 24 24 C 1.53002 * 109.47474 * 299.99803 * 23 9 8 25 25 H 4.38448 * 5.44495 * 180.02562 * 4 1 2 26 26 H 1.09007 * 109.47289 * 220.76950 * 3 2 1 27 27 H 1.09004 * 109.47515 * 340.76787 * 3 2 1 28 28 H 1.08998 * 109.47154 * 300.00130 * 7 5 4 29 29 H 1.09004 * 109.47219 * 60.00214 * 7 5 4 30 30 H 1.09004 * 109.46892 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.47047 * 60.00176 * 8 7 5 32 32 H 0.97003 * 119.99930 * 264.99867 * 11 9 8 33 33 H 1.08003 * 123.35219 * 0.02599 * 15 14 12 34 34 H 1.08998 * 109.47083 * 95.15007 * 17 16 15 35 35 H 1.09004 * 109.46973 * 215.14080 * 17 16 15 36 36 H 1.08994 * 109.47650 * 335.14476 * 17 16 15 37 37 H 1.08993 * 109.47396 * 6.72417 * 19 18 16 38 38 H 0.96696 * 113.99778 * 300.00037 * 20 19 18 39 39 H 1.48497 * 110.00200 * 180.02562 * 21 19 18 40 40 H 1.48503 * 110.00040 * 301.31653 * 21 19 18 41 41 H 1.08998 * 109.47154 * 180.02562 * 23 9 8 42 42 H 1.09004 * 109.47219 * 59.99931 * 23 9 8 43 43 H 1.08993 * 109.47351 * 300.00552 * 24 23 9 44 44 H 1.08999 * 109.47324 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1222 0.2526 -1.3235 5 6 4.5468 0.2737 -1.4344 6 1 4.9793 0.6181 -0.4950 7 6 5.0553 -1.1357 -1.7437 8 6 6.5806 -1.1131 -1.8619 9 6 6.9907 -0.1640 -2.9897 10 1 6.5586 -0.5081 -3.9294 11 7 8.4511 -0.1428 -3.1032 12 6 9.0838 -1.0801 -3.8365 13 8 8.4418 -1.9443 -4.4040 14 6 10.5450 -1.0586 -3.9506 15 6 11.2978 -1.9504 -4.6611 16 6 12.6472 -1.6959 -4.5963 17 6 13.6663 -2.5517 -5.3036 18 6 12.9897 -0.6328 -3.8594 19 6 14.4053 -0.1629 -3.6444 20 8 14.7618 -0.3373 -2.2716 21 14 14.5365 1.6399 -4.0958 22 16 11.6092 0.1237 -3.2013 23 6 6.4822 1.2454 -2.6804 24 6 4.9569 1.2229 -2.5623 25 1 -1.0501 0.0002 0.0001 26 1 3.0090 0.7792 0.6711 27 1 3.0098 -0.9695 0.3385 28 1 4.7635 -1.8117 -0.9401 29 1 4.6228 -1.4800 -2.6832 30 1 6.9428 -2.1173 -2.0818 31 1 7.0127 -0.7690 -0.9223 32 1 8.9629 0.5458 -2.6506 33 1 10.8749 -2.7734 -5.2181 34 1 13.9067 -2.1072 -6.2693 35 1 14.5704 -2.6155 -4.6980 36 1 13.2592 -3.5514 -5.4550 37 1 15.0806 -0.7445 -4.2718 38 1 14.2015 0.1530 -1.6545 39 1 15.9280 2.1154 -3.8887 40 1 14.1378 1.8391 -5.5123 41 1 6.7740 1.9215 -3.4841 42 1 6.9143 1.5896 -1.7407 43 1 4.5248 0.8788 -3.5018 44 1 4.5947 2.2269 -2.3415 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14940684_6739946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:51:27 Heat of formation + Delta-G solvation = -32.910248 kcal Electronic energy + Delta-G solvation = -25880.698487 eV Core-core repulsion = 22085.559115 eV Total energy + Delta-G solvation = -3795.139372 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.123 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.31406 -40.19891 -39.60910 -37.95624 -37.50726 -35.11814 -33.96504 -32.53351 -31.87400 -30.01373 -29.86663 -27.83737 -26.52997 -24.50044 -23.82167 -22.96264 -21.75893 -21.18280 -20.20269 -19.52550 -19.18886 -17.94436 -17.83221 -17.65488 -16.99036 -16.70272 -16.40201 -16.26111 -15.90884 -15.73806 -15.35534 -15.08146 -14.92354 -14.74533 -14.40408 -14.28262 -14.21533 -13.80241 -13.54374 -13.43101 -13.23429 -13.19029 -13.03412 -12.68971 -12.43848 -12.36876 -12.26470 -12.16340 -11.96745 -11.84600 -11.70093 -11.34018 -11.31081 -11.21290 -10.78330 -10.45915 -10.21622 -9.70863 -9.42151 -5.18306 -0.70462 0.30584 0.68226 1.05058 1.25018 1.49554 1.59579 1.79782 1.88434 1.94983 2.04654 2.89220 3.35459 3.53201 3.54729 3.57611 3.70022 3.73385 4.01912 4.04621 4.08987 4.16355 4.17206 4.24740 4.31418 4.37861 4.38851 4.43148 4.45292 4.48176 4.60191 4.68017 4.76818 4.81892 4.91773 4.94286 5.02753 5.04122 5.11943 5.14907 5.21883 5.23655 5.28540 5.33678 5.42515 6.21589 6.34686 6.57913 6.60093 7.02265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.236 4.236 3 C 0.167 3.833 4 O -0.400 6.400 5 C 0.089 3.911 6 H 0.090 0.910 7 C -0.136 4.136 8 C -0.120 4.120 9 C 0.143 3.857 10 H 0.067 0.933 11 N -0.707 5.707 12 C 0.590 3.410 13 O -0.571 6.571 14 C -0.286 4.286 15 C -0.061 4.061 16 C -0.114 4.114 17 C -0.103 4.103 18 C -0.242 4.242 19 C -0.039 4.039 20 O -0.546 6.546 21 Si 0.762 3.238 22 S 0.286 5.714 23 C -0.113 4.113 24 C -0.112 4.112 25 H 0.247 0.753 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.413 0.587 33 H 0.144 0.856 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.125 0.875 38 H 0.394 0.606 39 H -0.276 1.276 40 H -0.284 1.284 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.059 0.941 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.682 6.039 5.285 8.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.236 4.236 3 C 0.092 3.908 4 O -0.320 6.320 5 C 0.032 3.968 6 H 0.108 0.892 7 C -0.175 4.175 8 C -0.159 4.159 9 C 0.039 3.961 10 H 0.085 0.915 11 N -0.359 5.359 12 C 0.377 3.623 13 O -0.452 6.452 14 C -0.406 4.406 15 C -0.095 4.095 16 C -0.127 4.127 17 C -0.161 4.161 18 C -0.362 4.362 19 C -0.150 4.150 20 O -0.354 6.354 21 Si 0.665 3.335 22 S 0.556 5.444 23 C -0.151 4.151 24 C -0.150 4.150 25 H 0.264 0.736 26 H 0.112 0.888 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.250 0.750 33 H 0.162 0.838 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.142 0.858 38 H 0.244 0.756 39 H -0.202 1.202 40 H -0.210 1.210 41 H 0.106 0.894 42 H 0.118 0.882 43 H 0.078 0.922 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.697 6.994 4.919 8.717 hybrid contribution 0.313 -2.241 -1.180 2.552 sum 2.010 4.753 3.739 6.373 Atomic orbital electron populations 1.25856 0.96996 0.99665 0.96464 1.23276 0.95203 1.01832 1.03275 1.19323 0.84031 1.02259 0.85158 1.87967 1.22679 1.92790 1.28547 1.22318 0.79420 0.94853 1.00236 0.89195 1.21959 0.95177 0.97869 1.02460 1.21806 0.95209 0.99441 0.99426 1.21098 0.78498 0.97376 0.99131 0.91497 1.45791 1.08196 1.30735 1.51132 1.17165 0.85547 0.81321 0.78232 1.90837 1.67521 1.38370 1.48514 1.24575 0.96960 1.06511 1.12543 1.20727 0.92331 0.98968 0.97435 1.18793 0.94594 0.97625 1.01681 1.20643 0.96771 0.98779 0.99935 1.24730 1.02530 1.02323 1.06609 1.24784 0.90309 1.12280 0.87653 1.86552 1.59517 1.74799 1.14509 0.94257 0.83086 0.73812 0.82376 1.82148 0.91352 1.24645 1.46256 1.21733 0.94577 0.94150 1.04627 1.21510 0.95190 1.00085 0.98181 0.73632 0.88827 0.89763 0.90911 0.92693 0.93228 0.89258 0.74966 0.83835 0.90344 0.90696 0.90724 0.85834 0.75567 1.20222 1.21012 0.89391 0.88229 0.92218 0.89546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.47 19.25 74.32 1.43 0.97 16 2 C -0.24 -1.19 13.73 31.12 0.43 -0.77 16 3 C 0.17 0.09 6.22 70.17 0.44 0.53 16 4 O -0.40 -1.47 9.95 -148.98 -1.48 -2.95 16 5 C 0.09 -0.20 2.61 30.59 0.08 -0.12 16 6 H 0.09 -0.63 7.79 -2.39 -0.02 -0.65 16 7 C -0.14 0.06 5.54 30.59 0.17 0.23 16 8 C -0.12 0.15 5.49 30.60 0.17 0.32 16 9 C 0.14 -0.19 2.45 44.99 0.11 -0.08 16 10 H 0.07 0.32 7.57 -2.38 -0.02 0.30 16 11 N -0.71 1.32 5.07 -446.61 -2.27 -0.94 16 12 C 0.59 3.34 7.75 86.42 0.67 4.01 16 13 O -0.57 -8.44 16.50 -4.33 -0.07 -8.51 16 14 C -0.29 -0.73 6.45 24.07 0.16 -0.57 16 15 C -0.06 -0.26 9.78 21.71 0.21 -0.05 16 16 C -0.11 -0.20 5.78 -21.05 -0.12 -0.32 16 17 C -0.10 0.07 9.48 71.24 0.68 0.75 16 18 C -0.24 0.35 4.83 24.68 0.12 0.47 16 19 C -0.04 0.11 2.77 71.24 0.20 0.31 16 20 O -0.55 1.42 12.88 -148.98 -1.92 -0.50 16 21 Si 0.76 -3.24 32.12 68.60 2.20 -1.04 16 22 S 0.29 -1.60 20.81 -56.49 -1.18 -2.78 16 23 C -0.11 0.80 5.39 30.59 0.16 0.97 16 24 C -0.11 0.39 5.58 30.60 0.17 0.56 16 25 H 0.25 -1.19 7.80 -4.41 -0.03 -1.22 16 26 H 0.09 -0.38 8.09 -2.38 -0.02 -0.40 16 27 H 0.08 -0.20 7.87 -2.38 -0.02 -0.22 16 28 H 0.07 -0.08 7.87 -2.39 -0.02 -0.10 16 29 H 0.05 0.21 8.14 -2.38 -0.02 0.20 16 30 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.09 -0.49 8.14 -2.39 -0.02 -0.51 16 32 H 0.41 -3.50 7.72 -92.71 -0.72 -4.21 16 33 H 0.14 0.82 8.06 -2.91 -0.02 0.80 16 34 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.07 -0.11 7.00 -2.39 -0.02 -0.12 16 36 H 0.07 -0.08 8.10 -2.39 -0.02 -0.10 16 37 H 0.12 -0.26 6.25 -2.39 -0.01 -0.28 16 38 H 0.39 -4.36 8.70 -74.06 -0.64 -5.01 16 39 H -0.28 -0.51 7.11 99.48 0.71 0.20 16 40 H -0.28 -0.53 7.11 99.48 0.71 0.17 16 41 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 42 H 0.10 -1.16 8.14 -2.38 -0.02 -1.18 16 43 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 44 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 Total: 0.00 -23.09 382.59 0.05 -23.03 By element: Atomic # 1 Polarization: -13.19 SS G_CDS: -0.30 Total: -13.49 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 5.06 Total: 7.18 kcal Atomic # 7 Polarization: 1.32 SS G_CDS: -2.27 Total: -0.94 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -3.47 Total: -11.96 kcal Atomic # 14 Polarization: -3.24 SS G_CDS: 2.20 Total: -1.04 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -1.18 Total: -2.78 kcal Total: -23.09 0.05 -23.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14940684_6739946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.875 kcal (2) G-P(sol) polarization free energy of solvation -23.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds