Wall clock time and date at job start Sun Mar 7 2021 02:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42896 * 109.46934 * 130.25856 * 3 2 1 5 5 C 1.42898 * 113.99967 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47195 * 30.00481 * 5 4 3 7 7 C 1.53005 * 109.47129 * 150.00227 * 5 4 3 8 8 C 1.52999 * 109.47330 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.46738 * 299.99895 * 8 7 5 10 10 H 1.09009 * 109.47495 * 300.00085 * 9 8 7 11 11 N 1.46506 * 109.47089 * 180.02562 * 9 8 7 12 12 C 1.34777 * 119.99886 * 155.00046 * 11 9 8 13 13 O 1.21632 * 120.00455 * 359.97438 * 12 11 9 14 14 C 1.47187 * 119.99572 * 179.97438 * 12 11 9 15 15 C 1.36013 * 123.46177 * 359.70509 * 14 12 11 16 16 S 1.70448 * 110.81569 * 179.86038 * 15 14 12 17 17 C 1.75507 * 92.44550 * 0.34615 * 16 15 14 18 18 C 1.50704 * 124.71112 * 179.80557 * 17 16 15 19 19 O 1.42904 * 109.46835 * 119.99835 * 18 17 16 20 20 Si 1.86306 * 109.47019 * 359.97438 * 18 17 16 21 21 C 1.32768 * 110.57459 * 359.80510 * 17 16 15 22 22 C 1.53003 * 109.47295 * 60.00315 * 9 8 7 23 23 C 1.52999 * 109.46970 * 299.99543 * 22 9 8 24 24 H 4.38443 * 5.44391 * 180.02562 * 4 1 2 25 25 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 26 26 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 27 27 H 1.09003 * 109.46826 * 300.00300 * 7 5 4 28 28 H 1.09004 * 109.47197 * 60.00085 * 7 5 4 29 29 H 1.08996 * 109.47466 * 59.99965 * 8 7 5 30 30 H 1.08997 * 109.47222 * 180.02562 * 8 7 5 31 31 H 0.96998 * 119.99307 * 334.99579 * 11 9 8 32 32 H 1.07996 * 124.59390 * 359.97438 * 15 14 12 33 33 H 1.08996 * 109.46763 * 240.00067 * 18 17 16 34 34 H 0.96703 * 113.99384 * 179.97438 * 19 18 17 35 35 H 1.48497 * 110.00077 * 60.00051 * 20 18 17 36 36 H 1.48502 * 109.99653 * 181.31673 * 20 18 17 37 37 H 1.08002 * 123.45766 * 179.97438 * 21 17 16 38 38 H 1.08992 * 109.47289 * 59.99380 * 22 9 8 39 39 H 1.09000 * 109.47214 * 180.02562 * 22 9 8 40 40 H 1.09004 * 109.47283 * 300.00329 * 23 22 9 41 41 H 1.08997 * 109.47222 * 179.97438 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1219 0.8715 -1.0281 5 6 4.5464 0.9455 -1.1139 6 1 4.9795 -0.0010 -0.7906 7 6 4.9563 1.2261 -2.5611 8 6 6.4815 1.3047 -2.6531 9 6 6.9892 2.4318 -1.7515 10 1 6.5564 3.3786 -2.0747 11 7 8.4497 2.5076 -1.8400 12 6 9.0817 3.6674 -1.5722 13 8 8.4397 4.6514 -1.2575 14 6 10.5490 3.7433 -1.6606 15 6 11.3355 2.6867 -1.9997 16 16 12.9803 3.1336 -2.0066 17 6 12.6119 4.7826 -1.5317 18 6 13.6397 5.8632 -1.3148 19 8 13.3908 6.9448 -2.2149 20 14 15.3418 5.1731 -1.6277 21 6 11.3019 4.9457 -1.3901 22 6 6.5794 2.1512 -0.3043 23 6 5.0542 2.0726 -0.2124 24 1 -1.0502 -0.0001 0.0004 25 1 3.0092 0.3479 0.9672 26 1 3.0098 -1.0104 -0.1831 27 1 4.5948 0.4230 -3.2033 28 1 4.5231 2.1727 -2.8844 29 1 6.9143 0.3580 -2.3299 30 1 6.7735 1.5051 -3.6839 31 1 8.9616 1.7229 -2.0913 32 1 10.9676 1.6989 -2.2346 33 1 13.5772 6.2232 -0.2879 34 1 14.0156 7.6782 -2.1307 35 1 15.4404 4.6784 -3.0243 36 1 16.3666 6.2204 -1.3863 37 1 10.8461 5.8815 -1.1019 38 1 7.0121 1.2045 0.0188 39 1 6.9408 2.9544 0.3379 40 1 4.6214 3.0194 -0.5356 41 1 4.7622 1.8723 0.8185 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14940684_6894386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:51:31 Heat of formation + Delta-G solvation = -27.130101 kcal Electronic energy + Delta-G solvation = -23862.013976 eV Core-core repulsion = 20222.662869 eV Total energy + Delta-G solvation = -3639.351107 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.107 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.25397 -40.08241 -38.79651 -37.87877 -37.12034 -35.01198 -33.89212 -32.03549 -31.93633 -29.80572 -27.74467 -26.95498 -25.55627 -23.89498 -23.05595 -21.70517 -21.28614 -20.28051 -19.35509 -18.84695 -18.51338 -18.01207 -17.90173 -17.06915 -16.68174 -16.34847 -16.18036 -15.92891 -15.72114 -15.11498 -14.99891 -14.80485 -14.34311 -14.17372 -13.95878 -13.82453 -13.78040 -13.59404 -13.44882 -13.28321 -12.74287 -12.68199 -12.40893 -12.32542 -12.22754 -11.99130 -11.84397 -11.68119 -11.33764 -11.24972 -10.83367 -10.66279 -10.43646 -10.08820 -9.92908 -9.46707 -5.16649 -0.33724 0.33350 0.69487 0.92670 1.16994 1.49822 1.55367 1.82222 1.88433 2.10001 2.40661 2.87413 3.19725 3.48205 3.52149 3.60157 3.67308 3.84272 3.94334 4.00090 4.06153 4.09547 4.16367 4.25389 4.26420 4.32723 4.35279 4.37059 4.42209 4.57848 4.71727 4.75089 4.89278 4.94855 5.00349 5.05108 5.06864 5.10393 5.20742 5.25751 5.26763 5.48619 6.16094 6.32046 6.47791 6.64705 7.25022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.199 4.199 3 C 0.173 3.827 4 O -0.375 6.375 5 C 0.090 3.910 6 H 0.065 0.935 7 C -0.113 4.113 8 C -0.123 4.123 9 C 0.143 3.857 10 H 0.093 0.907 11 N -0.724 5.724 12 C 0.580 3.420 13 O -0.530 6.530 14 C -0.155 4.155 15 C -0.208 4.208 16 S 0.205 5.795 17 C -0.198 4.198 18 C -0.034 4.034 19 O -0.531 6.531 20 Si 0.647 3.353 21 C -0.054 4.054 22 C -0.126 4.126 23 C -0.140 4.140 24 H 0.223 0.777 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.398 0.602 32 H 0.172 0.828 33 H 0.087 0.913 34 H 0.383 0.617 35 H -0.235 1.235 36 H -0.238 1.238 37 H 0.155 0.845 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.115 -5.263 1.706 6.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.199 4.199 3 C 0.098 3.902 4 O -0.295 6.295 5 C 0.032 3.968 6 H 0.083 0.917 7 C -0.151 4.151 8 C -0.161 4.161 9 C 0.039 3.961 10 H 0.112 0.888 11 N -0.375 5.375 12 C 0.365 3.635 13 O -0.407 6.407 14 C -0.173 4.173 15 C -0.346 4.346 16 S 0.471 5.529 17 C -0.314 4.314 18 C -0.146 4.146 19 O -0.339 6.339 20 Si 0.545 3.455 21 C -0.083 4.083 22 C -0.165 4.165 23 C -0.178 4.178 24 H 0.239 0.761 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.233 0.767 32 H 0.189 0.811 33 H 0.105 0.895 34 H 0.232 0.768 35 H -0.158 1.158 36 H -0.161 1.161 37 H 0.173 0.827 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.142 -5.545 0.830 7.608 hybrid contribution -1.328 1.320 0.130 1.877 sum 3.814 -4.225 0.961 5.772 Atomic orbital electron populations 1.25051 0.95982 0.99037 0.98556 1.22512 0.93901 1.01640 1.01860 1.19111 0.84834 0.94293 0.92007 1.87998 1.21297 1.66044 1.54160 1.22198 0.80330 0.98104 0.96163 0.91656 1.21511 0.94441 1.03879 0.95236 1.21774 0.95567 0.98394 1.00390 1.21071 0.79176 1.00396 0.95429 0.88849 1.45897 1.07745 1.12706 1.71149 1.17603 0.86273 0.82933 0.76668 1.90824 1.67318 1.35601 1.46977 1.20223 0.93928 0.93976 1.09183 1.25786 0.99634 1.03368 1.05861 1.83042 1.03589 1.02562 1.63712 1.23535 0.97643 0.98390 1.11878 1.24036 1.05881 0.88725 0.95973 1.86619 1.56646 1.29702 1.60952 0.95393 0.75204 0.88651 0.86255 1.21018 0.91368 0.98147 0.97789 1.21877 0.95298 1.02613 0.96716 1.22013 0.95247 1.00240 1.00310 0.76074 0.90810 0.90795 0.90402 0.90409 0.91005 0.90321 0.76705 0.81063 0.89487 0.76823 1.15844 1.16081 0.82716 0.91534 0.90705 0.90479 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.26 19.25 29.55 0.57 0.31 16 2 C -0.20 -0.52 13.73 -37.12 -0.51 -1.03 16 3 C 0.17 0.11 6.22 34.37 0.21 0.33 16 4 O -0.38 -0.79 9.95 -35.23 -0.35 -1.14 16 5 C 0.09 -0.04 2.61 -26.73 -0.07 -0.11 16 6 H 0.07 -0.13 7.79 -51.93 -0.40 -0.53 16 7 C -0.11 0.12 5.57 -26.73 -0.15 -0.03 16 8 C -0.12 0.28 5.39 -26.73 -0.14 0.14 16 9 C 0.14 -0.05 2.45 -67.93 -0.17 -0.21 16 10 H 0.09 0.19 7.58 -51.92 -0.39 -0.21 16 11 N -0.72 0.33 5.05 -54.95 -0.28 0.06 16 12 C 0.58 1.68 7.76 -12.63 -0.10 1.58 16 13 O -0.53 -3.64 16.46 5.25 0.09 -3.56 16 14 C -0.15 -0.26 5.98 -104.63 -0.63 -0.88 16 15 C -0.21 0.24 10.38 29.93 0.31 0.55 16 16 S 0.20 -0.22 20.18 -107.50 -2.17 -2.39 16 17 C -0.20 -0.20 5.72 -36.18 -0.21 -0.40 16 18 C -0.03 0.01 2.94 36.01 0.11 0.12 16 19 O -0.53 -0.55 12.83 -35.23 -0.45 -1.00 16 20 Si 0.65 -0.93 30.91 -169.99 -5.25 -6.18 16 21 C -0.05 -0.14 9.91 -39.02 -0.39 -0.52 16 22 C -0.13 0.05 5.50 -26.73 -0.15 -0.10 16 23 C -0.14 0.03 5.54 -26.73 -0.15 -0.12 16 24 H 0.22 -0.43 7.80 -54.08 -0.42 -0.85 16 25 H 0.07 -0.06 7.87 -51.93 -0.41 -0.47 16 26 H 0.07 -0.09 8.09 -51.93 -0.42 -0.51 16 27 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 28 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 29 H 0.07 -0.26 8.14 -51.93 -0.42 -0.68 16 30 H 0.08 -0.19 8.14 -51.93 -0.42 -0.62 16 31 H 0.40 -1.34 7.10 -40.82 -0.29 -1.63 16 32 H 0.17 -0.76 7.01 -52.49 -0.37 -1.12 16 33 H 0.09 -0.18 7.96 -51.93 -0.41 -0.59 16 34 H 0.38 -1.22 8.74 45.56 0.40 -0.82 16 35 H -0.23 -0.31 7.11 56.52 0.40 0.09 16 36 H -0.24 -0.02 7.11 56.52 0.40 0.38 16 37 H 0.16 0.52 8.06 -52.49 -0.42 0.10 16 38 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 39 H 0.07 0.13 8.14 -51.93 -0.42 -0.30 16 40 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 41 H 0.07 -0.04 7.87 -51.93 -0.41 -0.44 16 LS Contribution 361.38 15.07 5.45 5.45 Total: 0.00 -9.04 361.38 -10.13 -19.18 By element: Atomic # 1 Polarization: -4.31 SS G_CDS: -5.71 Total: -10.02 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -1.45 Total: -0.39 kcal Atomic # 7 Polarization: 0.33 SS G_CDS: -0.28 Total: 0.06 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.72 Total: -5.70 kcal Atomic # 14 Polarization: -0.93 SS G_CDS: -5.25 Total: -6.18 kcal Atomic # 16 Polarization: -0.22 SS G_CDS: -2.17 Total: -2.39 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -9.04 -10.13 -19.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14940684_6894386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.954 kcal (2) G-P(sol) polarization free energy of solvation -9.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds