Wall clock time and date at job start Sun Mar 7 2021 02:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47628 * 21.89559 * 3 2 1 5 5 C 1.42895 * 114.00272 * 179.97438 * 4 3 2 6 6 H 1.08994 * 109.47348 * 329.99430 * 5 4 3 7 7 C 1.53000 * 109.47195 * 89.99939 * 5 4 3 8 8 C 1.53004 * 109.47004 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47258 * 299.99551 * 8 7 5 10 10 H 1.09002 * 109.47158 * 300.00425 * 9 8 7 11 11 N 1.46499 * 109.47529 * 180.02562 * 9 8 7 12 12 C 1.34771 * 119.99757 * 84.99918 * 11 9 8 13 13 O 1.21552 * 120.00229 * 0.02562 * 12 11 9 14 14 C 1.47849 * 119.99839 * 180.02562 * 12 11 9 15 15 C 1.39551 * 120.14340 * 353.76104 * 14 12 11 16 16 C 1.37980 * 119.85230 * 179.97438 * 15 14 12 17 17 C 1.50702 * 119.92674 * 179.97438 * 16 15 14 18 18 O 1.42907 * 109.46861 * 105.00319 * 17 16 15 19 19 Si 1.86302 * 109.47348 * 345.00605 * 17 16 15 20 20 C 1.38342 * 120.14766 * 0.02562 * 16 15 14 21 21 C 1.50694 * 119.85474 * 179.97438 * 20 16 15 22 22 C 1.38377 * 120.28632 * 359.97438 * 20 16 15 23 23 C 1.37933 * 120.15046 * 359.74033 * 22 20 16 24 24 C 1.50701 * 120.08034 * 180.28086 * 23 22 20 25 25 C 1.53001 * 109.47054 * 60.00069 * 9 8 7 26 26 C 1.53004 * 109.47032 * 300.00070 * 25 9 8 27 27 H 4.38446 * 5.44357 * 179.97438 * 4 1 2 28 28 H 1.09002 * 109.47075 * 141.89299 * 3 2 1 29 29 H 1.08996 * 109.47617 * 261.88930 * 3 2 1 30 30 H 1.09000 * 109.46834 * 299.99693 * 7 5 4 31 31 H 1.09002 * 109.47183 * 59.99757 * 7 5 4 32 32 H 1.09007 * 109.47018 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.46882 * 59.99896 * 8 7 5 34 34 H 0.96997 * 120.00129 * 265.00538 * 11 9 8 35 35 H 1.08002 * 120.07813 * 359.97438 * 15 14 12 36 36 H 1.08996 * 109.47271 * 224.99892 * 17 16 15 37 37 H 0.96704 * 113.99502 * 179.97438 * 18 17 16 38 38 H 1.48497 * 110.00033 * 59.99351 * 19 17 16 39 39 H 1.48496 * 110.00093 * 181.32046 * 19 17 16 40 40 H 1.09002 * 109.47159 * 90.00046 * 21 20 16 41 41 H 1.09002 * 109.46952 * 210.00117 * 21 20 16 42 42 H 1.09001 * 109.47593 * 329.99947 * 21 20 16 43 43 H 1.08001 * 119.92454 * 180.02562 * 22 20 16 44 44 H 1.09001 * 109.46665 * 263.67230 * 24 23 22 45 45 H 1.09005 * 109.46776 * 23.66572 * 24 23 22 46 46 H 1.08992 * 109.47639 * 143.66477 * 24 23 22 47 47 H 1.09000 * 109.47142 * 180.02562 * 25 9 8 48 48 H 1.08999 * 109.47050 * 59.99676 * 25 9 8 49 49 H 1.08994 * 109.47477 * 300.00077 * 26 25 9 50 50 H 1.09006 * 109.46979 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1229 -1.2492 -0.5024 5 6 4.5475 -1.3529 -0.5450 6 1 4.9793 -0.3646 -0.7020 7 6 5.0568 -1.9277 0.7783 8 6 6.5821 -2.0382 0.7329 9 6 6.9926 -2.9618 -0.4157 10 1 6.5612 -3.9504 -0.2590 11 7 8.4531 -3.0681 -0.4589 12 6 9.0865 -3.9678 0.3194 13 8 8.4460 -4.6913 1.0568 14 6 10.5605 -4.0747 0.2763 15 6 11.2893 -3.3401 -0.6599 16 6 12.6647 -3.4440 -0.6945 17 6 13.4534 -2.6518 -1.7052 18 8 14.0945 -1.5531 -1.0540 19 14 12.3047 -2.0081 -3.0231 20 6 13.3213 -4.2747 0.1959 21 6 14.8237 -4.3836 0.1519 22 6 12.6045 -5.0058 1.1266 23 6 11.2296 -4.9066 1.1757 24 6 10.4510 -5.6988 2.1942 25 6 6.4833 -2.3871 -1.7391 26 6 4.9579 -2.2766 -1.6937 27 1 -1.0498 -0.0004 0.0000 28 1 3.0089 0.8095 -0.6342 29 1 3.0093 0.1458 1.0173 30 1 4.7648 -1.2695 1.5966 31 1 4.6250 -2.9162 0.9353 32 1 6.9450 -2.4473 1.6759 33 1 7.0135 -1.0496 0.5762 34 1 8.9642 -2.4909 -1.0475 35 1 10.7780 -2.6915 -1.3559 36 1 14.2071 -3.2934 -2.1618 37 1 14.6215 -0.9985 -1.6455 38 1 11.2724 -1.1319 -2.4134 39 1 13.0748 -1.2520 -4.0431 40 1 15.2618 -3.6332 0.8099 41 1 15.1257 -5.3775 0.4823 42 1 15.1703 -4.2191 -0.8684 43 1 13.1231 -5.6522 1.8192 44 1 10.0873 -6.6193 1.7377 45 1 11.0981 -5.9423 3.0370 46 1 9.6049 -5.1079 2.5447 47 1 6.7754 -3.0453 -2.5574 48 1 6.9147 -1.3984 -1.8958 49 1 4.5265 -3.2651 -1.5369 50 1 4.5951 -1.8667 -2.6363 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14940684_9599494.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:51:38 Heat of formation + Delta-G solvation = -32.510262 kcal Electronic energy + Delta-G solvation = -30024.636588 eV Core-core repulsion = 25984.824695 eV Total energy + Delta-G solvation = -4039.811892 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.182 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.76790 -40.60170 -39.74040 -38.05224 -37.59202 -35.29425 -34.46588 -34.08789 -33.21941 -31.89548 -30.26206 -29.16279 -28.41220 -27.56471 -25.51460 -23.99282 -23.70088 -23.39319 -21.92994 -21.43222 -20.65526 -19.38885 -18.63014 -18.54223 -17.92766 -17.65970 -16.80681 -16.71724 -16.40981 -16.32190 -16.14938 -15.96883 -15.33515 -15.11563 -15.00172 -14.74417 -14.67144 -14.52494 -14.28636 -14.03479 -13.92107 -13.75430 -13.52644 -13.32709 -13.24758 -13.16187 -12.88680 -12.78147 -12.61626 -12.59018 -12.31831 -12.18682 -11.89911 -11.85159 -11.81443 -11.71212 -11.34461 -11.28870 -10.72410 -10.46223 -10.41730 -10.16886 -9.88667 -9.60816 -4.92892 -0.23997 0.17204 1.27986 1.47522 1.57791 1.73170 1.77795 1.91545 2.03608 2.63026 2.86557 3.32945 3.51180 3.52533 3.62561 3.66631 3.70841 3.76425 3.84898 4.00806 4.06416 4.12441 4.13678 4.19199 4.23070 4.29161 4.36381 4.42482 4.44943 4.45821 4.52607 4.58247 4.61547 4.69378 4.77565 4.78823 4.81975 4.88978 4.93031 5.00873 5.01178 5.06510 5.09749 5.12800 5.13349 5.22730 5.25810 5.30123 5.46777 5.50142 5.52183 5.81695 6.18030 6.43622 6.55931 6.61270 7.13836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.237 4.237 3 C 0.167 3.833 4 O -0.398 6.398 5 C 0.088 3.912 6 H 0.085 0.915 7 C -0.135 4.135 8 C -0.121 4.121 9 C 0.144 3.856 10 H 0.073 0.927 11 N -0.714 5.714 12 C 0.558 3.442 13 O -0.560 6.560 14 C -0.160 4.160 15 C -0.073 4.073 16 C -0.099 4.099 17 C -0.083 4.083 18 O -0.553 6.553 19 Si 0.747 3.253 20 C -0.033 4.033 21 C -0.118 4.118 22 C -0.137 4.137 23 C -0.027 4.027 24 C -0.117 4.117 25 C -0.115 4.115 26 C -0.110 4.110 27 H 0.248 0.752 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.409 0.591 35 H 0.143 0.857 36 H 0.097 0.903 37 H 0.394 0.606 38 H -0.278 1.278 39 H -0.284 1.284 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.147 0.853 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.091 0.909 48 H 0.090 0.910 49 H 0.063 0.937 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.984 2.193 -4.971 6.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.237 4.237 3 C 0.092 3.908 4 O -0.318 6.318 5 C 0.031 3.969 6 H 0.102 0.898 7 C -0.173 4.173 8 C -0.159 4.159 9 C 0.040 3.960 10 H 0.091 0.909 11 N -0.366 5.366 12 C 0.347 3.653 13 O -0.440 6.440 14 C -0.163 4.163 15 C -0.091 4.091 16 C -0.099 4.099 17 C -0.191 4.191 18 O -0.363 6.363 19 Si 0.651 3.349 20 C -0.034 4.034 21 C -0.174 4.174 22 C -0.154 4.154 23 C -0.028 4.028 24 C -0.173 4.173 25 C -0.153 4.153 26 C -0.148 4.148 27 H 0.265 0.735 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.246 0.754 35 H 0.160 0.840 36 H 0.115 0.885 37 H 0.245 0.755 38 H -0.205 1.205 39 H -0.211 1.211 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.165 0.835 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.109 0.891 48 H 0.109 0.891 49 H 0.082 0.918 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.799 1.985 -4.414 5.591 hybrid contribution 0.948 1.105 0.455 1.525 sum 3.746 3.089 -3.959 6.265 Atomic orbital electron populations 1.25853 0.96966 0.96706 0.99191 1.23236 0.95141 1.03217 1.02098 1.19303 0.84155 0.87048 1.00276 1.87964 1.22547 1.35778 1.85495 1.22309 0.79445 1.00119 0.95003 0.89755 1.21947 0.95071 1.02033 0.98252 1.21805 0.95246 1.00419 0.98460 1.21056 0.78900 0.99833 0.96226 0.90927 1.45932 1.07956 1.38839 1.43829 1.18414 0.87499 0.79739 0.79622 1.90736 1.68278 1.44744 1.40266 1.19670 0.92418 1.03258 1.00955 1.21274 0.93768 0.97061 0.97011 1.19209 0.92752 0.98997 0.98950 1.24931 1.02714 0.91062 1.00426 1.86575 1.68246 1.42067 1.39385 0.94304 0.79107 0.85493 0.76003 1.20270 0.97549 0.92984 0.92580 1.20935 0.89326 1.03273 1.03879 1.21190 0.92624 1.01414 1.00204 1.20232 0.94222 0.93843 0.94511 1.21007 0.99927 0.99641 0.96732 1.21745 0.94661 1.03106 0.95793 1.21500 0.95078 1.00047 0.98193 0.73532 0.89058 0.89846 0.91096 0.92264 0.93039 0.90207 0.75374 0.83950 0.88481 0.75523 1.20492 1.21057 0.90639 0.90108 0.90018 0.83510 0.90939 0.90851 0.90629 0.89052 0.89145 0.91783 0.89665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.54 19.25 74.32 1.43 0.89 16 2 C -0.24 -1.38 13.73 31.12 0.43 -0.95 16 3 C 0.17 0.29 6.22 70.17 0.44 0.73 16 4 O -0.40 -1.89 9.95 -148.98 -1.48 -3.37 16 5 C 0.09 -0.06 2.61 30.60 0.08 0.02 16 6 H 0.08 -0.39 7.79 -2.39 -0.02 -0.41 16 7 C -0.13 -0.12 5.54 30.60 0.17 0.05 16 8 C -0.12 -0.08 5.49 30.59 0.17 0.09 16 9 C 0.14 0.02 2.45 44.99 0.11 0.13 16 10 H 0.07 0.37 7.57 -2.39 -0.02 0.35 16 11 N -0.71 -0.31 5.03 -445.41 -2.24 -2.55 16 12 C 0.56 3.72 7.66 86.79 0.67 4.38 16 13 O -0.56 -7.32 13.02 -3.88 -0.05 -7.37 16 14 C -0.16 -0.81 5.87 -20.09 -0.12 -0.92 16 15 C -0.07 -0.08 8.13 22.53 0.18 0.11 16 16 C -0.10 -0.08 5.29 -19.90 -0.11 -0.18 16 17 C -0.08 0.27 2.03 71.24 0.14 0.42 16 18 O -0.55 0.56 12.78 -148.98 -1.90 -1.34 16 19 Si 0.75 -3.94 30.19 68.60 2.07 -1.87 16 20 C -0.03 -0.04 5.89 -19.81 -0.12 -0.16 16 21 C -0.12 0.34 9.53 71.23 0.68 1.01 16 22 C -0.14 -0.32 9.31 22.23 0.21 -0.11 16 23 C -0.03 -0.15 5.91 -19.61 -0.12 -0.27 16 24 C -0.12 -0.69 8.73 71.24 0.62 -0.07 16 25 C -0.12 0.60 5.39 30.60 0.17 0.76 16 26 C -0.11 0.25 5.57 30.60 0.17 0.42 16 27 H 0.25 -1.11 7.80 -4.43 -0.03 -1.15 16 28 H 0.09 -0.23 8.08 -2.39 -0.02 -0.25 16 29 H 0.08 -0.09 7.87 -2.39 -0.02 -0.11 16 30 H 0.07 0.02 7.87 -2.39 -0.02 0.00 16 31 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.05 0.29 8.14 -2.38 -0.02 0.27 16 33 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.41 -1.84 6.68 -92.71 -0.62 -2.46 16 35 H 0.14 -0.49 3.29 -2.91 -0.01 -0.50 16 36 H 0.10 -0.70 6.48 -2.39 -0.02 -0.72 16 37 H 0.39 -3.46 8.74 -74.05 -0.65 -4.10 16 38 H -0.28 0.33 6.74 99.48 0.67 1.00 16 39 H -0.28 0.24 7.11 99.48 0.71 0.95 16 40 H 0.08 -0.13 8.14 -2.39 -0.02 -0.14 16 41 H 0.08 -0.40 8.08 -2.39 -0.02 -0.42 16 42 H 0.08 -0.41 6.22 -2.39 -0.01 -0.42 16 43 H 0.15 -0.21 8.06 -2.91 -0.02 -0.24 16 44 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.07 0.16 8.04 -2.38 -0.02 0.14 16 46 H 0.08 0.77 5.87 -2.39 -0.01 0.76 16 47 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 48 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 49 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 50 H 0.08 -0.29 8.14 -2.38 -0.02 -0.31 16 Total: 0.00 -20.08 401.14 1.29 -18.79 By element: Atomic # 1 Polarization: -8.33 SS G_CDS: -0.31 Total: -8.63 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 5.20 Total: 6.34 kcal Atomic # 7 Polarization: -0.31 SS G_CDS: -2.24 Total: -2.55 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -3.44 Total: -12.08 kcal Atomic # 14 Polarization: -3.94 SS G_CDS: 2.07 Total: -1.87 kcal Total: -20.08 1.29 -18.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14940684_9599494.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.719 kcal (2) G-P(sol) polarization free energy of solvation -20.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds