Wall clock time and date at job start Sun Mar 7 2021 04:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30272 * 126.28633 * 2 1 4 4 N 1.28672 * 109.38231 * 179.72416 * 3 2 1 5 5 C 1.30276 * 109.37469 * 0.44727 * 4 3 2 6 6 C 1.50708 * 126.27700 * 179.82467 * 5 4 3 7 7 H 1.09002 * 112.84864 * 190.88968 * 6 5 4 8 8 C 1.53778 * 113.61230 * 322.19071 * 6 5 4 9 9 C 1.53782 * 87.08219 * 139.98248 * 8 6 5 10 10 H 1.09007 * 113.68782 * 89.12453 * 9 8 6 11 11 N 1.46492 * 113.61362 * 220.01784 * 9 8 6 12 12 C 1.34774 * 120.00007 * 252.49042 * 11 9 8 13 13 O 1.21284 * 119.99973 * 0.02562 * 12 11 9 14 14 C 1.50701 * 120.00153 * 180.02562 * 12 11 9 15 15 C 1.52995 * 109.47246 * 65.00402 * 14 12 11 16 16 O 1.42900 * 109.47148 * 185.00299 * 14 12 11 17 17 C 1.35905 * 117.00024 * 155.03792 * 16 14 12 18 18 C 1.38730 * 120.05405 * 5.43820 * 17 16 14 19 19 C 1.38146 * 119.94385 * 179.97438 * 18 17 16 20 20 C 1.38259 * 120.05582 * 359.97438 * 19 18 17 21 21 C 1.50701 * 119.94467 * 179.97438 * 20 19 18 22 22 O 1.42898 * 109.47326 * 300.00666 * 21 20 19 23 23 Si 1.86300 * 109.47019 * 180.02562 * 21 20 19 24 24 C 1.38271 * 120.11332 * 0.27784 * 20 19 18 25 25 C 1.38149 * 120.05121 * 359.44783 * 24 20 19 26 26 C 1.53778 * 113.61606 * 59.68663 * 6 5 4 27 27 O 1.34359 * 126.27719 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47590 * 270.00727 * 1 2 3 29 29 H 1.09007 * 109.46559 * 30.00436 * 1 2 3 30 30 H 1.09000 * 109.47300 * 149.99872 * 1 2 3 31 31 H 1.08997 * 113.61811 * 25.42907 * 8 6 5 32 32 H 1.09010 * 113.61508 * 254.52790 * 8 6 5 33 33 H 0.96999 * 120.00054 * 72.50320 * 11 9 8 34 34 H 1.08999 * 109.47167 * 305.00044 * 14 12 11 35 35 H 1.08998 * 109.47627 * 179.97438 * 15 14 12 36 36 H 1.09004 * 109.47311 * 299.99865 * 15 14 12 37 37 H 1.08999 * 109.47330 * 59.99742 * 15 14 12 38 38 H 1.08000 * 120.03195 * 359.95768 * 18 17 16 39 39 H 1.08005 * 119.96969 * 180.02562 * 19 18 17 40 40 H 1.08999 * 109.46878 * 60.00529 * 21 20 19 41 41 H 0.96699 * 113.99960 * 299.99328 * 22 21 20 42 42 H 1.48499 * 110.00009 * 58.68766 * 23 21 20 43 43 H 1.48506 * 110.00035 * 180.02562 * 23 21 20 44 44 H 1.07997 * 119.97468 * 179.72312 * 24 20 19 45 45 H 1.07996 * 120.02565 * 180.27459 * 25 24 20 46 46 H 1.09006 * 113.61147 * 105.46949 * 26 6 5 47 47 H 1.09005 * 113.68893 * 334.58447 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2780 1.0501 0.0000 4 7 3.5091 0.6760 0.0058 5 6 3.5653 -0.6256 0.0002 6 6 4.8176 -1.4641 0.0003 7 1 4.6210 -2.5183 -0.1948 8 6 5.9514 -0.8779 -0.8574 9 6 6.9156 -1.3184 0.2567 10 1 7.2948 -2.3327 0.1319 11 7 7.9748 -0.3453 0.5347 12 6 9.2419 -0.6011 0.1536 13 8 9.5053 -1.6367 -0.4200 14 6 10.3316 0.3997 0.4401 15 6 10.5221 0.5271 1.9528 16 8 11.5522 -0.0407 -0.1583 17 6 12.4707 0.9142 -0.4610 18 6 12.2523 2.2319 -0.0863 19 6 13.1876 3.2006 -0.3947 20 6 14.3410 2.8577 -1.0757 21 6 15.3594 3.9165 -1.4113 22 8 14.7547 4.9148 -2.2358 23 14 16.7859 3.1392 -2.3234 24 6 14.5587 1.5459 -1.4548 25 6 13.6290 0.5725 -1.1438 26 6 5.7213 -1.2214 1.2205 27 8 2.3020 -1.0832 0.0005 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 5.8914 0.2034 -0.9807 32 1 6.1032 -1.4046 -1.7997 33 1 7.7641 0.4831 0.9933 34 1 10.0530 1.3688 0.0261 35 1 11.3106 1.2506 2.1601 36 1 9.5911 0.8631 2.4093 37 1 10.8008 -0.4419 2.3669 38 1 11.3516 2.5004 0.4458 39 1 13.0182 4.2266 -0.1029 40 1 15.7226 4.3757 -0.4919 41 1 14.4084 4.5766 -3.0729 42 1 16.2988 2.4825 -3.5630 43 1 17.7976 4.1730 -2.6596 44 1 15.4583 1.2812 -1.9906 45 1 13.8015 -0.4527 -1.4362 46 1 5.6873 -2.0253 1.9559 47 1 5.5992 -0.2343 1.6666 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_10157680.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:03:50 Heat of formation + Delta-G solvation = -8.306470 kcal Electronic energy + Delta-G solvation = -30853.707093 eV Core-core repulsion = 26392.722220 eV Total energy + Delta-G solvation = -4460.984873 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.156 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.33256 -41.86737 -41.01971 -39.80097 -38.88609 -37.28262 -37.26715 -35.17092 -33.80466 -32.93973 -32.05720 -31.38563 -29.63342 -27.09897 -26.91580 -26.61612 -25.41808 -24.25834 -23.72549 -23.32159 -22.37475 -21.53432 -20.83932 -19.50683 -18.67269 -18.53358 -18.49696 -18.21959 -17.48821 -16.90005 -16.81411 -16.46636 -16.31704 -16.20594 -15.85202 -15.63401 -15.49240 -15.28370 -14.80989 -14.74326 -14.34100 -14.26539 -14.24426 -13.80925 -13.66160 -13.62128 -13.60693 -13.43838 -13.34165 -13.27643 -12.99247 -12.91910 -12.72237 -12.36939 -12.26218 -12.13632 -12.07443 -11.95151 -11.89053 -11.59970 -10.93003 -10.59783 -10.49905 -10.21406 -10.04046 -9.22597 -4.91740 0.04898 0.24458 0.32622 1.15754 1.23054 1.33003 1.37223 1.52235 1.60608 1.95858 2.47709 2.64632 2.76515 3.17664 3.33446 3.41907 3.43959 3.50778 3.62477 3.66546 3.70779 3.72542 3.83901 3.86334 3.92809 4.00537 4.26958 4.29267 4.35369 4.39687 4.47814 4.52250 4.56239 4.59679 4.60992 4.64041 4.65777 4.68177 4.70764 4.79702 4.86418 4.99572 5.00683 5.04587 5.10344 5.19031 5.29169 5.40330 5.47951 5.67839 6.24414 6.41659 6.49102 7.04644 7.19047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.168 3.832 3 N -0.332 5.332 4 N -0.311 5.311 5 C 0.175 3.825 6 C -0.020 4.020 7 H 0.149 0.851 8 C -0.135 4.135 9 C 0.130 3.870 10 H 0.119 0.881 11 N -0.699 5.699 12 C 0.521 3.479 13 O -0.564 6.564 14 C 0.062 3.938 15 C -0.172 4.172 16 O -0.310 6.310 17 C 0.120 3.880 18 C -0.208 4.208 19 C -0.057 4.057 20 C -0.159 4.159 21 C -0.073 4.073 22 O -0.549 6.549 23 Si 0.758 3.242 24 C -0.077 4.077 25 C -0.159 4.159 26 C -0.115 4.115 27 O -0.231 6.231 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.419 0.581 34 H 0.122 0.878 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.063 0.937 38 H 0.153 0.847 39 H 0.139 0.861 40 H 0.127 0.873 41 H 0.385 0.615 42 H -0.286 1.286 43 H -0.303 1.303 44 H 0.148 0.852 45 H 0.136 0.864 46 H 0.108 0.892 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.140 -1.544 4.729 6.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.043 4.043 3 N -0.178 5.178 4 N -0.156 5.156 5 C -0.036 4.036 6 C -0.040 4.040 7 H 0.166 0.834 8 C -0.174 4.174 9 C 0.025 3.975 10 H 0.137 0.863 11 N -0.352 5.352 12 C 0.307 3.693 13 O -0.441 6.441 14 C 0.003 3.997 15 C -0.229 4.229 16 O -0.224 6.224 17 C 0.075 3.925 18 C -0.227 4.227 19 C -0.075 4.075 20 C -0.159 4.159 21 C -0.183 4.183 22 O -0.357 6.357 23 Si 0.664 3.336 24 C -0.094 4.094 25 C -0.177 4.177 26 C -0.154 4.154 27 O -0.111 6.111 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.131 0.869 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.257 0.743 34 H 0.139 0.861 35 H 0.103 0.897 36 H 0.126 0.874 37 H 0.082 0.918 38 H 0.170 0.830 39 H 0.156 0.844 40 H 0.145 0.855 41 H 0.234 0.766 42 H -0.213 1.213 43 H -0.231 1.231 44 H 0.165 0.835 45 H 0.154 0.846 46 H 0.127 0.873 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.952 -0.882 4.071 5.105 hybrid contribution -1.469 -0.203 -0.768 1.670 sum -4.421 -1.085 3.303 5.624 Atomic orbital electron populations 1.20705 0.76995 1.07210 1.06916 1.28971 0.99350 0.78850 0.97120 1.74372 0.96553 1.27039 1.19853 1.74223 1.12667 1.10175 1.18558 1.28243 0.85398 0.91415 0.98567 1.21233 0.82685 0.99075 1.01000 0.83352 1.23589 0.92299 1.02704 0.98830 1.22365 0.85120 0.94467 0.95577 0.86308 1.45683 1.06011 1.23464 1.60004 1.20484 0.84010 0.86964 0.77892 1.90749 1.82973 1.28239 1.42158 1.22416 0.82679 0.97844 0.96754 1.22357 1.05641 1.04171 0.90743 1.86185 1.25899 1.33880 1.76396 1.19267 0.89976 0.88096 0.95159 1.21522 1.02882 0.91688 1.06590 1.20982 0.92128 0.99628 0.94758 1.20271 0.98067 0.94695 1.02880 1.25083 1.00792 0.92035 1.00358 1.86560 1.78284 1.36288 1.34554 0.94163 0.76346 0.81165 0.81879 1.20981 0.98456 0.91827 0.98126 1.20585 0.93450 1.01310 1.02373 1.23434 0.91050 1.05194 0.95726 1.84813 1.17777 1.38676 1.69871 0.86363 0.86588 0.86873 0.88789 0.89590 0.74269 0.86073 0.89658 0.87416 0.91806 0.82976 0.84363 0.85514 0.76572 1.21316 1.23141 0.83471 0.84594 0.87311 0.88187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.46 10.51 71.24 0.75 1.21 16 2 C 0.17 0.45 8.48 88.34 0.75 1.20 16 3 N -0.33 -2.95 12.22 -165.51 -2.02 -4.97 16 4 N -0.31 -2.46 11.84 -165.50 -1.96 -4.42 16 5 C 0.18 0.49 7.53 88.34 0.67 1.16 16 6 C -0.02 0.09 4.29 -11.01 -0.05 0.04 16 7 H 0.15 -1.26 8.14 -2.39 -0.02 -1.28 16 8 C -0.13 0.41 7.42 31.12 0.23 0.64 16 9 C 0.13 -0.56 4.24 45.52 0.19 -0.36 16 10 H 0.12 -0.24 7.46 -2.38 -0.02 -0.25 16 11 N -0.70 3.05 5.32 -440.04 -2.34 0.71 16 12 C 0.52 1.39 7.18 87.66 0.63 2.01 16 13 O -0.56 -7.23 16.11 15.95 0.26 -6.98 16 14 C 0.06 -0.06 2.64 29.85 0.08 0.01 16 15 C -0.17 1.02 9.12 71.98 0.66 1.68 16 16 O -0.31 -1.95 9.34 -73.49 -0.69 -2.63 16 17 C 0.12 0.46 6.60 22.51 0.15 0.61 16 18 C -0.21 0.06 8.24 22.37 0.18 0.24 16 19 C -0.06 0.00 9.60 22.25 0.21 0.21 16 20 C -0.16 -0.04 5.39 -19.85 -0.11 -0.15 16 21 C -0.07 0.05 2.82 71.24 0.20 0.25 16 22 O -0.55 -1.36 12.77 -148.98 -1.90 -3.26 16 23 Si 0.76 -0.93 29.78 68.60 2.04 1.12 16 24 C -0.08 -0.03 8.66 22.26 0.19 0.16 16 25 C -0.16 -0.54 9.99 22.37 0.22 -0.31 16 26 C -0.12 0.83 7.38 31.12 0.23 1.06 16 27 O -0.23 -0.74 10.87 -3.59 -0.04 -0.78 16 28 H 0.12 -1.26 8.14 -2.39 -0.02 -1.28 16 29 H 0.12 -1.02 8.14 -2.38 -0.02 -1.04 16 30 H 0.11 -1.25 8.14 -2.39 -0.02 -1.27 16 31 H 0.09 -0.06 7.78 -2.39 -0.02 -0.08 16 32 H 0.09 -0.22 8.14 -2.38 -0.02 -0.24 16 33 H 0.42 -4.25 8.51 -92.71 -0.79 -5.04 16 34 H 0.12 -0.71 6.31 -2.39 -0.02 -0.73 16 35 H 0.08 -0.56 6.91 -2.39 -0.02 -0.58 16 36 H 0.11 -1.26 7.93 -2.39 -0.02 -1.28 16 37 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.15 -0.84 5.43 -2.91 -0.02 -0.85 16 39 H 0.14 -0.28 8.06 -2.91 -0.02 -0.30 16 40 H 0.13 -0.33 7.96 -2.39 -0.02 -0.35 16 41 H 0.39 -0.98 8.70 -74.06 -0.64 -1.63 16 42 H -0.29 -0.89 7.11 99.48 0.71 -0.18 16 43 H -0.30 -1.97 7.11 99.48 0.71 -1.26 16 44 H 0.15 -0.50 4.87 -2.91 -0.01 -0.52 16 45 H 0.14 0.36 8.06 -2.91 -0.02 0.34 16 46 H 0.11 -1.09 8.14 -2.38 -0.02 -1.11 16 47 H 0.10 -0.66 8.07 -2.38 -0.02 -0.68 16 Total: 0.00 -29.54 395.61 -1.82 -31.35 By element: Atomic # 1 Polarization: -19.44 SS G_CDS: -0.36 Total: -19.80 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 5.19 Total: 9.66 kcal Atomic # 7 Polarization: -2.36 SS G_CDS: -6.32 Total: -8.68 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -2.37 Total: -13.65 kcal Atomic # 14 Polarization: -0.93 SS G_CDS: 2.04 Total: 1.12 kcal Total: -29.54 -1.82 -31.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_10157680.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.048 kcal (2) G-P(sol) polarization free energy of solvation -29.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds