Wall clock time and date at job start Sun Mar 7 2021 04:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30271 * 126.28119 * 2 1 4 4 N 1.28668 * 109.38063 * 180.02562 * 3 2 1 5 5 C 1.30274 * 109.38175 * 359.97438 * 4 3 2 6 6 C 1.50703 * 126.28368 * 179.73686 * 5 4 3 7 7 H 1.09005 * 112.84995 * 170.36123 * 6 5 4 8 8 C 1.53779 * 113.61369 * 301.55637 * 6 5 4 9 9 C 1.53785 * 87.07942 * 139.98033 * 8 6 5 10 10 H 1.09004 * 113.60996 * 89.19820 * 9 8 6 11 11 N 1.46494 * 113.61401 * 220.01944 * 9 8 6 12 12 C 1.34781 * 120.00173 * 205.00247 * 11 9 8 13 13 O 1.21701 * 119.99697 * 359.97438 * 12 11 9 14 14 C 1.46675 * 120.00460 * 179.97438 * 12 11 9 15 15 C 1.37871 * 126.23418 * 179.97438 * 14 12 11 16 16 C 1.39840 * 107.08323 * 180.02562 * 15 14 12 17 17 C 1.50700 * 126.06792 * 179.97438 * 16 15 14 18 18 O 1.42904 * 109.46759 * 299.99742 * 17 16 15 19 19 Si 1.86294 * 109.47051 * 179.97438 * 17 16 15 20 20 C 1.35447 * 107.86479 * 0.02562 * 16 15 14 21 21 N 1.35538 * 108.87687 * 359.73023 * 20 16 15 22 22 C 1.53775 * 113.61177 * 39.16410 * 6 5 4 23 23 O 1.34360 * 126.28092 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.46927 * 89.97918 * 1 2 3 25 25 H 1.09002 * 109.47084 * 209.97709 * 1 2 3 26 26 H 1.08998 * 109.47037 * 329.98133 * 1 2 3 27 27 H 1.09001 * 113.61295 * 254.52778 * 8 6 5 28 28 H 1.08997 * 113.61603 * 25.43249 * 8 6 5 29 29 H 0.97001 * 120.00073 * 24.99649 * 11 9 8 30 30 H 1.07989 * 126.45697 * 359.96825 * 15 14 12 31 31 H 1.08995 * 109.46939 * 59.99692 * 17 16 15 32 32 H 0.96696 * 113.99851 * 180.02562 * 18 17 16 33 33 H 1.48492 * 110.00368 * 298.67633 * 19 17 16 34 34 H 1.48498 * 110.00136 * 59.99930 * 19 17 16 35 35 H 1.08006 * 125.56528 * 180.02562 * 20 16 15 36 36 H 0.96993 * 125.68379 * 180.30265 * 21 20 16 37 37 H 1.08997 * 113.62014 * 334.56844 * 22 6 5 38 38 H 1.09008 * 113.61393 * 105.47324 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6761 -0.0005 5 6 3.5654 -0.6254 -0.0004 6 6 4.8177 -1.4638 -0.0064 7 1 4.6193 -2.5222 0.1632 8 6 5.7337 -1.1942 -1.2119 9 6 6.9182 -1.3128 -0.2383 10 1 7.2962 -2.3297 -0.1324 11 7 7.9800 -0.3338 -0.4840 12 6 9.2433 -0.5981 -0.0958 13 8 9.5019 -1.6498 0.4593 14 6 10.3066 0.3817 -0.3424 15 6 11.6354 0.2455 -0.0011 16 6 12.2884 1.4090 -0.4199 17 6 13.7561 1.7101 -0.2575 18 8 14.0929 1.7036 1.1313 19 14 14.1298 3.3862 -0.9799 20 6 11.3675 2.2179 -0.9963 21 7 10.1602 1.6029 -0.9606 22 6 5.9418 -0.8984 0.8775 23 8 2.3021 -1.0831 0.0005 24 1 -0.3633 0.0004 -1.0276 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3633 0.8898 0.5141 27 1 5.7071 -1.9816 -1.9651 28 1 5.6152 -0.1972 -1.6359 29 1 7.7739 0.5046 -0.9262 30 1 12.0867 -0.5999 0.4967 31 1 14.3421 0.9521 -0.7771 32 1 15.0244 1.8908 1.3109 33 1 13.8139 3.3959 -2.4308 34 1 13.3369 4.4289 -0.2804 35 1 11.5640 3.1917 -1.4199 36 1 9.3308 1.9639 -1.3108 37 1 5.8803 0.1797 1.0258 38 1 6.0831 -1.4473 1.8086 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_10543058.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:03:55 Heat of formation + Delta-G solvation = 42.155417 kcal Electronic energy + Delta-G solvation = -23755.610204 eV Core-core repulsion = 19989.371183 eV Total energy + Delta-G solvation = -3766.239022 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.37285 -42.61321 -41.05620 -39.39147 -37.58157 -37.31800 -35.15315 -33.70331 -32.71299 -30.96476 -29.66075 -27.22984 -26.97406 -26.28958 -24.65558 -23.70368 -23.04672 -21.49631 -21.12605 -20.61881 -19.64146 -18.65099 -18.55399 -18.26122 -17.52594 -17.25152 -16.58152 -16.32437 -15.93794 -15.57011 -15.41538 -15.11871 -14.89715 -14.74501 -14.41321 -14.28697 -14.09928 -13.78529 -13.71142 -13.64192 -13.48717 -13.43538 -13.03546 -12.78946 -12.48846 -12.41548 -12.02094 -11.95555 -11.93794 -11.39167 -10.54474 -10.35409 -10.34112 -9.94405 -9.43301 -4.87497 0.00692 0.21408 1.13316 1.19200 1.29912 1.45419 1.76014 1.83316 1.98592 2.05761 2.13959 2.71600 3.13084 3.28854 3.42291 3.58074 3.59077 3.66004 3.70334 3.87570 3.96268 4.03649 4.23145 4.25659 4.35082 4.42254 4.49470 4.54126 4.59046 4.63416 4.65033 4.74149 4.77636 4.81441 4.88488 4.96536 4.99319 5.31035 5.45510 5.61420 6.18436 6.36071 6.93090 7.02000 7.14971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.169 3.831 3 N -0.332 5.332 4 N -0.313 5.313 5 C 0.176 3.824 6 C -0.018 4.018 7 H 0.152 0.848 8 C -0.117 4.117 9 C 0.129 3.871 10 H 0.124 0.876 11 N -0.705 5.705 12 C 0.595 3.405 13 O -0.564 6.564 14 C -0.065 4.065 15 C -0.099 4.099 16 C -0.189 4.189 17 C -0.056 4.056 18 O -0.571 6.571 19 Si 0.786 3.214 20 C 0.031 3.969 21 N -0.517 5.517 22 C -0.135 4.135 23 O -0.231 6.231 24 H 0.118 0.882 25 H 0.113 0.887 26 H 0.116 0.884 27 H 0.110 0.890 28 H 0.096 0.904 29 H 0.410 0.590 30 H 0.137 0.863 31 H 0.081 0.919 32 H 0.400 0.600 33 H -0.280 1.280 34 H -0.293 1.293 35 H 0.187 0.813 36 H 0.436 0.564 37 H 0.090 0.910 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.103 0.790 -4.113 4.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.042 4.042 3 N -0.178 5.178 4 N -0.158 5.158 5 C -0.036 4.036 6 C -0.038 4.038 7 H 0.170 0.830 8 C -0.155 4.155 9 C 0.024 3.976 10 H 0.142 0.858 11 N -0.356 5.356 12 C 0.383 3.617 13 O -0.443 6.443 14 C -0.178 4.178 15 C -0.126 4.126 16 C -0.195 4.195 17 C -0.165 4.165 18 O -0.381 6.381 19 Si 0.690 3.310 20 C -0.107 4.107 21 N -0.114 5.114 22 C -0.174 4.174 23 O -0.111 6.111 24 H 0.137 0.863 25 H 0.132 0.868 26 H 0.134 0.866 27 H 0.128 0.872 28 H 0.115 0.885 29 H 0.247 0.753 30 H 0.155 0.845 31 H 0.099 0.901 32 H 0.250 0.750 33 H -0.207 1.207 34 H -0.220 1.220 35 H 0.204 0.796 36 H 0.277 0.723 37 H 0.108 0.892 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.714 1.867 -4.124 4.841 hybrid contribution -1.240 -0.997 -0.078 1.593 sum -2.954 0.870 -4.202 5.210 Atomic orbital electron populations 1.20711 0.76905 1.07241 1.06936 1.28994 0.99373 0.78829 0.97023 1.74368 0.96506 1.27065 1.19903 1.74217 1.12752 1.10260 1.18615 1.28225 0.85426 0.91382 0.98565 1.21225 0.82618 0.99278 1.00652 0.83032 1.23437 0.91142 1.04946 0.96009 1.22465 0.84925 0.94448 0.95750 0.85798 1.45680 1.06811 1.22103 1.60970 1.17106 0.81956 0.84917 0.77685 1.90847 1.82900 1.26423 1.44114 1.20302 0.95781 0.89853 1.11907 1.21273 0.91421 0.98967 1.00902 1.19252 0.95813 0.96147 1.08326 1.24364 0.91829 1.12862 0.87449 1.86462 1.33709 1.95069 1.22813 0.93888 0.88935 0.72609 0.75612 1.21992 0.84394 0.99175 1.05096 1.41805 1.10564 1.13981 1.45063 1.23614 0.92331 1.02682 0.98792 1.84815 1.17723 1.38659 1.69857 0.86341 0.86806 0.86586 0.87151 0.88534 0.75345 0.84477 0.90137 0.74968 1.20695 1.22022 0.79602 0.72328 0.89162 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.43 10.51 71.24 0.75 1.18 16 2 C 0.17 0.56 8.48 88.34 0.75 1.31 16 3 N -0.33 -3.21 12.22 -165.51 -2.02 -5.23 16 4 N -0.31 -2.80 11.87 -165.50 -1.96 -4.77 16 5 C 0.18 0.65 7.52 88.34 0.66 1.32 16 6 C -0.02 0.06 4.28 -11.02 -0.05 0.01 16 7 H 0.15 -1.20 8.14 -2.38 -0.02 -1.22 16 8 C -0.12 0.66 7.38 31.12 0.23 0.89 16 9 C 0.13 -0.31 4.24 45.58 0.19 -0.11 16 10 H 0.12 -0.10 7.46 -2.39 -0.02 -0.11 16 11 N -0.71 0.66 5.35 -443.71 -2.38 -1.72 16 12 C 0.59 4.08 7.79 86.45 0.67 4.75 16 13 O -0.56 -8.34 16.48 -4.35 -0.07 -8.41 16 14 C -0.07 -0.39 7.06 40.35 0.28 -0.11 16 15 C -0.10 -0.94 10.59 22.57 0.24 -0.70 16 16 C -0.19 -1.13 5.47 -20.12 -0.11 -1.24 16 17 C -0.06 -0.06 3.01 71.24 0.21 0.15 16 18 O -0.57 -1.54 12.86 -148.98 -1.92 -3.45 16 19 Si 0.79 -2.76 30.59 68.60 2.10 -0.66 16 20 C 0.03 0.06 10.45 83.48 0.87 0.93 16 21 N -0.52 0.26 5.99 -183.61 -1.10 -0.84 16 22 C -0.13 0.21 7.43 31.18 0.23 0.44 16 23 O -0.23 -0.90 10.87 -3.66 -0.04 -0.94 16 24 H 0.12 -1.21 8.14 -2.39 -0.02 -1.23 16 25 H 0.11 -1.21 8.14 -2.39 -0.02 -1.23 16 26 H 0.12 -0.97 8.14 -2.39 -0.02 -0.99 16 27 H 0.11 -0.96 8.14 -2.39 -0.02 -0.97 16 28 H 0.10 -0.45 8.07 -2.39 -0.02 -0.47 16 29 H 0.41 -2.56 7.86 -92.71 -0.73 -3.29 16 30 H 0.14 1.58 8.06 -2.92 -0.02 1.56 16 31 H 0.08 -0.13 7.96 -2.39 -0.02 -0.14 16 32 H 0.40 -3.28 8.74 -74.06 -0.65 -3.93 16 33 H -0.28 -0.08 7.11 99.48 0.71 0.63 16 34 H -0.29 -0.91 7.11 99.48 0.71 -0.21 16 35 H 0.19 -0.51 6.19 -2.91 -0.02 -0.53 16 36 H 0.44 -3.52 8.19 -92.71 -0.76 -4.28 16 37 H 0.09 0.12 7.81 -2.39 -0.02 0.10 16 38 H 0.09 -0.13 8.14 -2.38 -0.02 -0.15 16 Total: 0.00 -30.28 333.85 -3.40 -33.68 By element: Atomic # 1 Polarization: -15.53 SS G_CDS: -0.95 Total: -16.48 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 4.94 Total: 8.82 kcal Atomic # 7 Polarization: -5.09 SS G_CDS: -7.46 Total: -12.56 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: -2.03 Total: -12.80 kcal Atomic # 14 Polarization: -2.76 SS G_CDS: 2.10 Total: -0.66 kcal Total: -30.28 -3.40 -33.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_10543058.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.838 kcal (2) G-P(sol) polarization free energy of solvation -30.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds