Wall clock time and date at job start Sun Mar 7 2021 04:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35716 * 117.00433 * 2 1 4 4 C 1.38680 * 119.85891 * 359.97438 * 3 2 1 5 5 C 1.38446 * 120.02781 * 180.02562 * 4 3 2 6 6 O 1.35658 * 120.11638 * 180.02562 * 5 4 3 7 7 C 1.42902 * 117.00252 * 359.97438 * 6 5 4 8 8 C 1.40291 * 119.76168 * 359.78544 * 5 4 3 9 9 C 1.47306 * 120.13663 * 180.23858 * 8 5 4 10 10 O 1.21621 * 119.99812 * 0.24821 * 9 8 5 11 11 N 1.34780 * 119.99900 * 180.25563 * 9 8 5 12 12 C 1.46490 * 119.99708 * 179.97438 * 11 9 8 13 13 H 1.09000 * 112.85243 * 23.80230 * 12 11 9 14 14 C 1.53789 * 113.61247 * 154.99826 * 12 11 9 15 15 C 1.53785 * 87.07994 * 139.98024 * 14 12 11 16 16 H 1.09004 * 113.61472 * 89.19886 * 15 14 12 17 17 C 1.50697 * 113.61798 * 220.01841 * 15 14 12 18 18 N 1.30277 * 126.27826 * 60.01831 * 17 15 14 19 19 N 1.28670 * 109.37658 * 179.97438 * 18 17 15 20 20 C 1.30273 * 109.38315 * 0.02562 * 19 18 17 21 21 C 1.50695 * 126.28153 * 179.97438 * 20 19 18 22 22 O 1.34361 * 126.28348 * 239.71656 * 17 15 14 23 23 C 1.53777 * 113.61588 * 252.49524 * 12 11 9 24 24 C 1.39857 * 119.73085 * 0.48750 * 8 5 4 25 25 C 1.37551 * 119.95892 * 359.46988 * 24 8 5 26 26 C 1.50698 * 119.87783 * 180.27926 * 25 24 8 27 27 O 1.42898 * 109.47471 * 104.99663 * 26 25 24 28 28 Si 1.86302 * 109.47006 * 344.99921 * 26 25 24 29 29 H 1.09000 * 109.46987 * 300.00412 * 1 2 3 30 30 H 1.09007 * 109.46588 * 59.99867 * 1 2 3 31 31 H 1.08997 * 109.47550 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.98773 * 0.02562 * 4 3 2 33 33 H 1.08998 * 109.46969 * 300.00301 * 7 6 5 34 34 H 1.09003 * 109.46900 * 60.00360 * 7 6 5 35 35 H 1.09005 * 109.47174 * 180.02562 * 7 6 5 36 36 H 0.97003 * 120.00030 * 359.97438 * 11 9 8 37 37 H 1.08996 * 113.61212 * 254.52603 * 14 12 11 38 38 H 1.08991 * 113.61219 * 25.43753 * 14 12 11 39 39 H 1.08997 * 109.47397 * 89.97110 * 21 20 19 40 40 H 1.09000 * 109.47210 * 209.97196 * 21 20 19 41 41 H 1.09004 * 109.47133 * 329.97349 * 21 20 19 42 42 H 1.08998 * 113.61751 * 334.57163 * 23 12 11 43 43 H 1.09003 * 113.61703 * 105.47564 * 23 12 11 44 44 H 1.08002 * 120.02393 * 179.74886 * 24 8 5 45 45 H 1.08997 * 109.47072 * 224.99735 * 26 25 24 46 46 H 0.96703 * 113.99434 * 59.99865 * 27 26 25 47 47 H 1.48497 * 110.00014 * 300.00022 * 28 26 25 48 48 H 1.48497 * 110.00053 * 61.32294 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2871 2.3705 -0.0005 5 6 1.9121 3.6058 -0.0011 6 8 1.1723 4.7429 -0.0011 7 6 -0.2488 4.5924 -0.0011 8 6 3.3132 3.6774 0.0035 9 6 3.9867 4.9875 0.0083 10 8 3.3280 6.0099 0.0128 11 7 5.3329 5.0531 0.0074 12 6 6.0027 6.3559 0.0116 13 1 5.3793 7.1511 0.4203 14 6 7.4206 6.3177 0.6059 15 6 7.8318 7.2864 -0.5155 16 1 7.7101 8.3370 -0.2514 17 6 9.1841 6.9849 -1.1081 18 7 9.5378 5.8786 -1.6982 19 7 10.7629 5.9715 -2.0806 20 6 11.2324 7.1400 -1.7471 21 6 12.6260 7.6494 -2.0104 22 8 10.2445 7.8097 -1.1299 23 6 6.6602 6.7149 -1.3314 24 6 4.0679 2.5000 -0.0018 25 6 3.4353 1.2786 -0.0004 26 6 4.2503 0.0110 0.0003 27 8 4.2154 -0.5771 1.3022 28 14 6.0130 0.4059 -0.4556 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2087 2.3111 -0.0005 33 1 -0.5559 4.0431 -0.8910 34 1 -0.5559 4.0432 0.8890 35 1 -0.7184 5.5761 -0.0015 36 1 5.8583 4.2376 0.0041 37 1 7.4876 6.7512 1.6037 38 1 7.8975 5.3402 0.5350 39 1 12.6520 8.1539 -2.9763 40 1 12.9107 8.3509 -1.2263 41 1 13.3234 6.8116 -2.0193 42 1 6.9293 5.8459 -1.9319 43 1 6.1135 7.4690 -1.8975 44 1 5.1468 2.5496 -0.0024 45 1 3.8351 -0.6882 -0.7255 46 1 3.3268 -0.8090 1.6052 47 1 6.0629 1.0181 -1.8076 48 1 6.6005 1.3335 0.5441 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_12297780.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:04:14 Heat of formation + Delta-G solvation = -41.737623 kcal Electronic energy + Delta-G solvation = -34559.430645 eV Core-core repulsion = 29778.313897 eV Total energy + Delta-G solvation = -4781.116748 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.156 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.35747 -42.25345 -41.14843 -40.22566 -39.37099 -38.43104 -37.30185 -37.04010 -35.02062 -33.66307 -32.33313 -31.84499 -29.66835 -29.04459 -28.27090 -26.97594 -26.89758 -26.12635 -24.91079 -23.83489 -23.48579 -22.71600 -21.67638 -20.98226 -20.09052 -18.78878 -18.74531 -18.55188 -18.47351 -17.82181 -17.49213 -17.26814 -17.05496 -16.66463 -16.55316 -16.40773 -15.95934 -15.91017 -15.82542 -15.52605 -15.42573 -14.93660 -14.39062 -14.29029 -14.24364 -13.98960 -13.81846 -13.73008 -13.65544 -13.60922 -13.49497 -13.37637 -13.01270 -12.75732 -12.69055 -12.60284 -12.58194 -12.39027 -12.26761 -11.99318 -11.92474 -11.77688 -11.39979 -11.18932 -10.92006 -10.53076 -10.25846 -10.04503 -9.31284 -4.85353 -0.42478 -0.05326 0.02301 1.14460 1.21016 1.33711 1.55665 1.66217 1.87404 1.97262 1.98459 2.07419 2.45170 2.72901 3.14111 3.28694 3.29429 3.39916 3.45740 3.56653 3.60383 3.64447 3.66527 3.93046 3.96025 3.97339 4.05583 4.15844 4.23586 4.23918 4.27268 4.28520 4.33136 4.39924 4.44457 4.51379 4.53937 4.57746 4.60426 4.63776 4.66631 4.67224 4.74064 4.79045 4.81323 4.90189 4.99750 5.03181 5.14199 5.37867 5.90912 6.16749 6.32564 6.64150 7.05173 7.16883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.311 6.311 3 C 0.213 3.787 4 C -0.303 4.303 5 C 0.219 3.781 6 O -0.302 6.302 7 C 0.009 3.991 8 C -0.231 4.231 9 C 0.566 3.434 10 O -0.553 6.553 11 N -0.715 5.715 12 C 0.129 3.871 13 H 0.125 0.875 14 C -0.121 4.121 15 C -0.015 4.015 16 H 0.155 0.845 17 C 0.176 3.824 18 N -0.315 5.315 19 N -0.331 5.331 20 C 0.169 3.831 21 C -0.060 4.060 22 O -0.230 6.230 23 C -0.135 4.135 24 C -0.014 4.014 25 C -0.200 4.200 26 C -0.072 4.072 27 O -0.545 6.545 28 Si 0.788 3.212 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.127 0.873 32 H 0.172 0.828 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.404 0.596 37 H 0.111 0.889 38 H 0.091 0.909 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.140 0.860 45 H 0.087 0.913 46 H 0.374 0.626 47 H -0.265 1.265 48 H -0.274 1.274 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.403 -1.593 0.942 2.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.223 6.223 3 C 0.164 3.836 4 C -0.323 4.323 5 C 0.170 3.830 6 O -0.213 6.213 7 C -0.085 4.085 8 C -0.235 4.235 9 C 0.355 3.645 10 O -0.433 6.433 11 N -0.366 5.366 12 C 0.024 3.976 13 H 0.143 0.857 14 C -0.160 4.160 15 C -0.035 4.035 16 H 0.172 0.828 17 C -0.036 4.036 18 N -0.160 5.160 19 N -0.177 5.177 20 C -0.042 4.042 21 C -0.117 4.117 22 O -0.110 6.110 23 C -0.174 4.174 24 C -0.033 4.033 25 C -0.201 4.201 26 C -0.180 4.180 27 O -0.352 6.352 28 Si 0.689 3.311 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.145 0.855 32 H 0.189 0.811 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.133 0.867 36 H 0.240 0.760 37 H 0.129 0.871 38 H 0.109 0.891 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.106 0.894 43 H 0.110 0.890 44 H 0.157 0.843 45 H 0.105 0.895 46 H 0.223 0.777 47 H -0.191 1.191 48 H -0.200 1.200 Dipole moment (debyes) X Y Z Total from point charges -0.621 -1.355 0.193 1.503 hybrid contribution -1.801 1.221 0.454 2.223 sum -2.422 -0.134 0.648 2.511 Atomic orbital electron populations 1.23540 0.75438 1.06518 1.02763 1.86047 1.24168 1.25409 1.86649 1.18777 0.90983 0.84692 0.89106 1.21484 1.02373 0.90405 1.18000 1.18904 0.89857 0.85923 0.88333 1.86364 1.20941 1.28095 1.85913 1.23524 0.76350 1.05848 1.02805 1.19179 0.91410 0.93573 1.19318 1.18033 0.82393 0.88468 0.75603 1.90803 1.65333 1.36508 1.50612 1.45833 1.05756 1.09695 1.75331 1.22425 0.92418 0.86310 0.96473 0.85706 1.23459 0.93705 0.99832 0.99006 1.21203 0.81127 1.03770 0.97379 0.82761 1.28179 0.91830 0.85071 0.98524 1.74243 1.05964 1.21789 1.14014 1.74369 1.03270 1.18481 1.21609 1.29022 0.95009 0.87786 0.92398 1.20714 0.80922 1.04213 1.05879 1.84809 1.20646 1.44291 1.61206 1.23577 0.94109 1.02027 0.97673 1.20842 0.99082 0.90365 0.92984 1.19669 0.91723 0.96439 1.12286 1.25193 1.12348 0.91757 0.88724 1.86681 1.34289 1.82043 1.32142 0.92323 0.76172 0.85642 0.76958 0.91042 0.91309 0.85483 0.81096 0.90874 0.90801 0.86663 0.75957 0.87051 0.89086 0.86477 0.86703 0.86448 0.89404 0.89005 0.84342 0.89538 0.77706 1.19077 1.20027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.09 9.80 113.37 1.11 1.02 16 2 O -0.31 0.33 9.36 -90.38 -0.85 -0.52 16 3 C 0.21 0.56 6.62 22.60 0.15 0.71 16 4 C -0.30 -0.65 8.01 22.43 0.18 -0.47 16 5 C 0.22 1.73 6.70 22.82 0.15 1.88 16 6 O -0.30 -2.73 8.56 -68.77 -0.59 -3.31 16 7 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 8 C -0.23 -2.14 5.89 -20.00 -0.12 -2.26 16 9 C 0.57 6.32 7.76 86.63 0.67 6.99 16 10 O -0.55 -9.61 14.75 16.87 0.25 -9.36 16 11 N -0.71 -3.73 5.30 -443.42 -2.35 -6.08 16 12 C 0.13 0.23 4.24 45.52 0.19 0.42 16 13 H 0.13 0.33 7.46 -2.39 -0.02 0.31 16 14 C -0.12 0.19 7.38 31.12 0.23 0.42 16 15 C -0.01 0.01 4.29 -11.01 -0.05 -0.04 16 16 H 0.15 -0.91 8.14 -2.38 -0.02 -0.93 16 17 C 0.18 1.05 7.53 88.34 0.67 1.71 16 18 N -0.31 -3.59 11.83 -165.50 -1.96 -5.55 16 19 N -0.33 -3.76 12.22 -165.51 -2.02 -5.78 16 20 C 0.17 0.78 8.48 88.34 0.75 1.53 16 21 C -0.06 0.37 10.51 71.23 0.75 1.12 16 22 O -0.23 -1.24 10.87 -3.63 -0.04 -1.28 16 23 C -0.13 -0.22 7.42 31.12 0.23 0.02 16 24 C -0.01 -0.09 8.14 22.50 0.18 0.09 16 25 C -0.20 -0.94 5.27 -19.80 -0.10 -1.05 16 26 C -0.07 -0.16 2.32 71.24 0.17 0.01 16 27 O -0.55 -1.69 12.65 -148.98 -1.89 -3.57 16 28 Si 0.79 0.81 30.39 68.60 2.09 2.90 16 29 H 0.07 -0.69 7.65 -2.39 -0.02 -0.71 16 30 H 0.07 -0.64 7.65 -2.38 -0.02 -0.66 16 31 H 0.13 -1.47 8.14 -2.39 -0.02 -1.49 16 32 H 0.17 -0.71 4.50 -2.91 -0.01 -0.73 16 33 H 0.07 -0.36 7.66 -2.39 -0.02 -0.38 16 34 H 0.07 -0.37 7.66 -2.39 -0.02 -0.39 16 35 H 0.12 -0.40 8.14 -2.38 -0.02 -0.42 16 36 H 0.40 1.04 6.75 -92.71 -0.63 0.41 16 37 H 0.11 -0.57 8.14 -2.39 -0.02 -0.59 16 38 H 0.09 0.04 8.07 -2.39 -0.02 0.02 16 39 H 0.12 -1.06 8.14 -2.39 -0.02 -1.08 16 40 H 0.11 -1.15 8.14 -2.39 -0.02 -1.17 16 41 H 0.12 -0.90 8.14 -2.38 -0.02 -0.92 16 42 H 0.09 0.44 7.78 -2.39 -0.02 0.42 16 43 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 44 H 0.14 0.58 3.24 -2.91 -0.01 0.57 16 45 H 0.09 0.00 7.82 -2.39 -0.02 -0.02 16 46 H 0.37 -0.43 8.59 -74.06 -0.64 -1.07 16 47 H -0.27 -1.15 7.11 99.48 0.71 -0.44 16 48 H -0.27 -1.30 6.80 99.48 0.68 -0.62 16 Total: 0.00 -27.88 399.98 -1.29 -29.17 By element: Atomic # 1 Polarization: -9.63 SS G_CDS: -0.20 Total: -9.83 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 6.27 Total: 13.22 kcal Atomic # 7 Polarization: -11.08 SS G_CDS: -6.33 Total: -17.41 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -3.11 Total: -18.04 kcal Atomic # 14 Polarization: 0.81 SS G_CDS: 2.09 Total: 2.90 kcal Total: -27.88 -1.29 -29.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_12297780.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.569 kcal (2) G-P(sol) polarization free energy of solvation -27.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds