Wall clock time and date at job start Sun Mar 7 2021 04:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30274 * 126.28314 * 2 1 4 4 N 1.28674 * 109.37972 * 179.97438 * 3 2 1 5 5 C 1.30274 * 109.37802 * 359.97438 * 4 3 2 6 6 C 1.50710 * 126.27763 * 180.02562 * 5 4 3 7 7 H 1.09000 * 112.84610 * 191.15532 * 6 5 4 8 8 C 1.53775 * 113.61505 * 322.46190 * 6 5 4 9 9 C 1.53777 * 87.08038 * 139.98015 * 8 6 5 10 10 H 1.08998 * 113.61615 * 89.11236 * 9 8 6 11 11 N 1.46498 * 113.61715 * 220.01962 * 9 8 6 12 12 C 1.34780 * 120.00114 * 252.50052 * 11 9 8 13 13 O 1.21575 * 119.99626 * 359.97438 * 12 11 9 14 14 C 1.47688 * 120.00104 * 180.02562 * 12 11 9 15 15 C 1.39825 * 120.16765 * 180.02562 * 14 12 11 16 16 F 1.35100 * 120.10731 * 0.02562 * 15 14 12 17 17 C 1.38323 * 119.78030 * 179.97438 * 15 14 12 18 18 C 1.38199 * 120.11705 * 0.02562 * 17 15 14 19 19 C 1.38456 * 120.33895 * 359.97438 * 18 17 15 20 20 C 1.50708 * 119.88821 * 180.02562 * 19 18 17 21 21 O 1.42902 * 109.46987 * 119.99669 * 20 19 18 22 22 Si 1.86299 * 109.47014 * 359.97438 * 20 19 18 23 23 C 1.37852 * 120.21940 * 359.71619 * 19 18 17 24 24 C 1.53780 * 113.61096 * 59.96322 * 6 5 4 25 25 O 1.34356 * 107.43917 * 0.02562 * 5 4 3 26 26 H 1.08999 * 109.46772 * 270.03850 * 1 2 3 27 27 H 1.08999 * 109.46906 * 30.03825 * 1 2 3 28 28 H 1.08997 * 109.46965 * 150.04096 * 1 2 3 29 29 H 1.08994 * 113.61196 * 254.52868 * 8 6 5 30 30 H 1.09004 * 113.61523 * 25.43521 * 8 6 5 31 31 H 0.96999 * 120.00265 * 72.49715 * 11 9 8 32 32 H 1.08001 * 119.93749 * 179.97438 * 17 15 14 33 33 H 1.08006 * 119.82648 * 179.97438 * 18 17 15 34 34 H 1.08993 * 109.47020 * 239.99315 * 20 19 18 35 35 H 0.96698 * 114.00162 * 299.99645 * 21 20 19 36 36 H 1.48501 * 109.99789 * 180.02562 * 22 20 19 37 37 H 1.48503 * 109.99832 * 301.31627 * 22 20 19 38 38 H 1.08006 * 120.05983 * 180.28454 * 23 19 18 39 39 H 1.09001 * 113.61883 * 334.56299 * 24 6 5 40 40 H 1.08997 * 113.61677 * 105.38497 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5091 0.6760 0.0005 5 6 3.5653 -0.6255 0.0015 6 6 4.8177 -1.4640 0.0029 7 1 4.6212 -2.5185 -0.1909 8 6 5.9517 -0.8789 -0.8552 9 6 6.9156 -1.3179 0.2596 10 1 7.2939 -2.3326 0.1353 11 7 7.9747 -0.3445 0.5368 12 6 9.2420 -0.6006 0.1562 13 8 9.5062 -1.6398 -0.4168 14 6 10.3098 0.3805 0.4362 15 6 11.6256 0.1185 0.0424 16 9 11.9252 -1.0335 -0.5965 17 6 12.6193 1.0433 0.3083 18 6 12.3129 2.2220 0.9614 19 6 11.0116 2.4864 1.3535 20 6 10.6887 3.7754 2.0645 21 8 9.7347 4.5152 1.2999 22 14 12.2436 4.7827 2.2608 23 6 10.0093 1.5775 1.0900 24 6 5.7210 -1.2197 1.2232 25 8 2.3021 -1.0831 0.0009 26 1 -0.3633 0.0007 1.0277 27 1 -0.3633 0.8896 -0.5144 28 1 -0.3633 -0.8903 -0.5132 29 1 6.1036 -1.4067 -1.7967 30 1 5.8917 0.2024 -0.9798 31 1 7.7639 0.4845 0.9943 32 1 13.6366 0.8434 0.0056 33 1 13.0926 2.9406 1.1669 34 1 10.2732 3.5538 3.0475 35 1 10.0378 4.7476 0.4115 36 1 11.9387 6.0561 2.9612 37 1 13.2550 4.0115 3.0274 38 1 8.9943 1.7884 1.3929 39 1 5.5980 -0.2317 1.6668 40 1 5.6857 -2.0220 1.9602 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_12335834.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:04:18 Heat of formation + Delta-G solvation = -16.453055 kcal Electronic energy + Delta-G solvation = -27748.424622 eV Core-core repulsion = 23447.389942 eV Total energy + Delta-G solvation = -4301.034681 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.116 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.01195 -45.33928 -41.58681 -40.43160 -39.34416 -37.43818 -37.28379 -35.14364 -33.72959 -32.56349 -32.21775 -29.65100 -27.05443 -26.93665 -26.62317 -25.43615 -23.96046 -23.54532 -22.71423 -21.69136 -20.91180 -19.19827 -18.66172 -18.54044 -18.30368 -18.22933 -17.46220 -17.10594 -16.93758 -16.48320 -16.26587 -15.97870 -15.88496 -15.70327 -15.50210 -15.26210 -14.67547 -14.41177 -14.35994 -14.27733 -13.79098 -13.68672 -13.63373 -13.60904 -13.46663 -13.19416 -12.99611 -12.87137 -12.73672 -12.37822 -12.15405 -11.97728 -11.90972 -11.84317 -11.20763 -10.51283 -10.48053 -10.42299 -10.15376 -9.81198 -4.96430 -0.50887 -0.03494 0.04220 1.16491 1.22854 1.31362 1.57459 1.66681 1.94818 2.02185 2.46326 2.74687 3.04057 3.16156 3.32086 3.35704 3.42954 3.50171 3.58274 3.62336 3.66509 3.69277 3.98164 4.01450 4.10246 4.28767 4.37025 4.43986 4.45607 4.51787 4.58014 4.58744 4.62978 4.67741 4.75578 4.78323 4.82120 4.84971 4.94445 5.00154 5.03609 5.13985 5.38402 5.59453 6.31046 6.78783 6.99598 7.18627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.168 3.832 3 N -0.331 5.331 4 N -0.312 5.312 5 C 0.176 3.824 6 C -0.018 4.018 7 H 0.151 0.849 8 C -0.133 4.133 9 C 0.128 3.872 10 H 0.121 0.879 11 N -0.700 5.700 12 C 0.558 3.442 13 O -0.566 6.566 14 C -0.189 4.189 15 C 0.135 3.865 16 F -0.135 7.135 17 C -0.151 4.151 18 C -0.051 4.051 19 C -0.134 4.134 20 C -0.070 4.070 21 O -0.553 6.553 22 Si 0.774 3.226 23 C -0.027 4.027 24 C -0.118 4.118 25 O -0.231 6.231 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.414 0.586 32 H 0.168 0.832 33 H 0.168 0.832 34 H 0.117 0.883 35 H 0.397 0.603 36 H -0.303 1.303 37 H -0.278 1.278 38 H 0.154 0.846 39 H 0.096 0.904 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.166 1.756 1.208 2.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.043 4.043 3 N -0.178 5.178 4 N -0.157 5.157 5 C -0.036 4.036 6 C -0.038 4.038 7 H 0.169 0.831 8 C -0.172 4.172 9 C 0.023 3.977 10 H 0.139 0.861 11 N -0.352 5.352 12 C 0.346 3.654 13 O -0.446 6.446 14 C -0.193 4.193 15 C 0.115 3.885 16 F -0.113 7.113 17 C -0.170 4.170 18 C -0.069 4.069 19 C -0.135 4.135 20 C -0.180 4.180 21 O -0.361 6.361 22 Si 0.680 3.320 23 C -0.045 4.045 24 C -0.156 4.156 25 O -0.111 6.111 26 H 0.136 0.864 27 H 0.134 0.866 28 H 0.132 0.868 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.252 0.748 32 H 0.186 0.814 33 H 0.185 0.815 34 H 0.135 0.865 35 H 0.247 0.753 36 H -0.232 1.232 37 H -0.205 1.205 38 H 0.172 0.828 39 H 0.115 0.885 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.428 2.530 1.865 3.172 hybrid contribution -0.914 -1.489 0.213 1.760 sum -1.342 1.041 2.078 2.683 Atomic orbital electron populations 1.20705 0.76928 1.07235 1.06900 1.28990 0.99360 0.78837 0.97096 1.74376 0.96506 1.27042 1.19836 1.74236 1.12718 1.10215 1.18523 1.28213 0.85394 0.91393 0.98608 1.21218 0.82668 0.99171 1.00730 0.83146 1.23570 0.92139 1.02696 0.98825 1.22406 0.85121 0.94464 0.95747 0.86133 1.45734 1.06455 1.23166 1.59802 1.18305 0.83279 0.85660 0.78137 1.90838 1.83110 1.27747 1.42928 1.20052 0.92727 0.98281 1.08261 1.18184 0.93278 0.83096 0.93967 1.91562 1.93645 1.47391 1.78753 1.21397 1.00198 0.93630 1.01753 1.21384 0.96258 0.95911 0.93314 1.20472 0.93561 0.97906 1.01568 1.25160 1.04177 0.91955 0.96662 1.86503 1.43208 1.74154 1.32228 0.93780 0.74398 0.75856 0.88000 1.21169 1.00910 0.89502 0.92942 1.23440 0.91294 1.05017 0.95891 1.84810 1.17733 1.38681 1.69887 0.86400 0.86555 0.86833 0.89297 0.88894 0.74752 0.81400 0.81522 0.86543 0.75267 1.23160 1.20503 0.82841 0.88517 0.87302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.41 10.51 71.24 0.75 1.16 16 2 C 0.17 0.61 8.48 88.34 0.75 1.36 16 3 N -0.33 -3.33 12.22 -165.50 -2.02 -5.36 16 4 N -0.31 -2.95 11.83 -165.50 -1.96 -4.90 16 5 C 0.18 0.74 7.53 88.34 0.67 1.40 16 6 C -0.02 0.05 4.29 -11.01 -0.05 0.00 16 7 H 0.15 -1.09 8.14 -2.39 -0.02 -1.11 16 8 C -0.13 0.15 7.42 31.12 0.23 0.38 16 9 C 0.13 -0.20 4.24 45.52 0.19 -0.01 16 10 H 0.12 0.03 7.46 -2.39 -0.02 0.01 16 11 N -0.70 0.13 5.31 -443.05 -2.35 -2.22 16 12 C 0.56 3.70 7.77 86.74 0.67 4.37 16 13 O -0.57 -8.55 14.94 -3.95 -0.06 -8.61 16 14 C -0.19 -0.62 5.88 -20.05 -0.12 -0.73 16 15 C 0.14 0.64 7.29 22.67 0.17 0.81 16 16 F -0.14 -1.55 15.55 44.97 0.70 -0.85 16 17 C -0.15 0.37 10.01 22.28 0.22 0.59 16 18 C -0.05 0.32 8.66 22.31 0.19 0.51 16 19 C -0.13 0.66 5.39 -19.90 -0.11 0.55 16 20 C -0.07 0.40 2.82 71.24 0.20 0.61 16 21 O -0.55 2.49 12.76 -148.98 -1.90 0.59 16 22 Si 0.77 -5.16 29.78 68.60 2.04 -3.12 16 23 C -0.03 0.07 9.09 22.52 0.20 0.27 16 24 C -0.12 0.55 7.38 31.12 0.23 0.78 16 25 O -0.23 -0.99 10.87 -3.59 -0.04 -1.03 16 26 H 0.12 -1.17 8.14 -2.39 -0.02 -1.19 16 27 H 0.12 -0.95 8.14 -2.39 -0.02 -0.97 16 28 H 0.11 -1.18 8.14 -2.39 -0.02 -1.20 16 29 H 0.09 -0.11 8.14 -2.39 -0.02 -0.13 16 30 H 0.09 0.14 7.78 -2.39 -0.02 0.13 16 31 H 0.41 -1.97 6.76 -92.71 -0.63 -2.60 16 32 H 0.17 -1.13 8.06 -2.91 -0.02 -1.15 16 33 H 0.17 -1.94 4.86 -2.91 -0.01 -1.95 16 34 H 0.12 -0.62 7.96 -2.39 -0.02 -0.64 16 35 H 0.40 -4.80 8.70 -74.06 -0.64 -5.44 16 36 H -0.30 -0.67 7.11 99.48 0.71 0.04 16 37 H -0.28 0.74 7.11 99.48 0.71 1.45 16 38 H 0.15 -0.95 6.41 -2.91 -0.02 -0.97 16 39 H 0.10 -0.35 8.07 -2.39 -0.02 -0.37 16 40 H 0.11 -0.84 8.14 -2.39 -0.02 -0.86 16 Total: 0.00 -28.88 349.14 -1.49 -30.37 By element: Atomic # 1 Polarization: -16.84 SS G_CDS: -0.10 Total: -16.94 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 4.21 Total: 12.07 kcal Atomic # 7 Polarization: -6.15 SS G_CDS: -6.33 Total: -12.48 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -2.00 Total: -9.04 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.70 Total: -0.85 kcal Atomic # 14 Polarization: -5.16 SS G_CDS: 2.04 Total: -3.12 kcal Total: -28.88 -1.49 -30.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_12335834.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.913 kcal (2) G-P(sol) polarization free energy of solvation -28.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds