Wall clock time and date at job start Sun Mar 7 2021 04:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34850 * 125.90213 * 2 1 4 4 C 1.40937 * 107.46999 * 180.02562 * 3 2 1 5 5 C 1.50702 * 126.26904 * 179.97438 * 4 3 2 6 6 O 1.42896 * 109.46919 * 255.02563 * 5 4 3 7 7 Si 1.86303 * 109.46947 * 15.02440 * 5 4 3 8 8 C 1.34862 * 107.46616 * 359.77166 * 4 3 2 9 9 C 1.50695 * 125.89944 * 180.24127 * 8 4 3 10 10 N 1.36567 * 108.19657 * 0.36620 * 8 4 3 11 11 C 1.40225 * 125.66488 * 179.88857 * 10 8 4 12 12 C 1.38548 * 119.99524 * 244.71728 * 11 10 8 13 13 C 1.39506 * 119.78428 * 179.97438 * 12 11 10 14 14 C 1.47857 * 120.11316 * 179.97438 * 13 12 11 15 15 O 1.21544 * 119.99964 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99676 * 180.02562 * 14 13 12 17 17 C 1.46494 * 119.99525 * 180.02562 * 16 14 13 18 18 H 1.09000 * 112.91148 * 23.75262 * 17 16 14 19 19 C 1.53786 * 113.61370 * 155.00031 * 17 16 14 20 20 C 1.53781 * 87.17350 * 140.02367 * 19 17 16 21 21 H 1.08999 * 113.61567 * 89.07405 * 20 19 17 22 22 C 1.50696 * 113.61615 * 219.89494 * 20 19 17 23 23 N 1.30272 * 126.28364 * 59.68631 * 22 20 19 24 24 N 1.28665 * 109.38559 * 179.82841 * 23 22 20 25 25 C 1.30280 * 109.37669 * 0.44547 * 24 23 22 26 26 C 1.50698 * 126.28163 * 179.73143 * 25 24 23 27 27 O 1.34358 * 107.43425 * 359.73006 * 25 24 23 28 28 C 1.53781 * 87.08070 * 334.52830 * 20 19 17 29 29 C 1.39580 * 119.77040 * 0.25942 * 13 12 11 30 30 C 1.38017 * 119.98565 * 359.46164 * 29 13 12 31 31 C 1.38215 * 120.21717 * 0.53770 * 30 29 13 32 32 H 1.08998 * 109.46917 * 269.97793 * 1 2 3 33 33 H 1.09004 * 109.46796 * 29.97455 * 1 2 3 34 34 H 1.09002 * 109.47225 * 149.97344 * 1 2 3 35 35 H 1.08003 * 126.26608 * 0.04034 * 3 2 1 36 36 H 1.08997 * 109.46934 * 135.02831 * 5 4 3 37 37 H 0.96708 * 114.00022 * 179.97438 * 6 5 4 38 38 H 1.48498 * 110.00193 * 300.00127 * 7 5 4 39 39 H 1.48497 * 109.99720 * 61.32127 * 7 5 4 40 40 H 1.09005 * 109.47122 * 270.15039 * 9 8 4 41 41 H 1.08996 * 109.47468 * 30.14765 * 9 8 4 42 42 H 1.09000 * 109.47144 * 150.15047 * 9 8 4 43 43 H 1.07997 * 120.10689 * 0.02562 * 12 11 10 44 44 H 0.97000 * 119.99938 * 0.02562 * 16 14 13 45 45 H 1.09002 * 113.61357 * 25.43283 * 19 17 16 46 46 H 1.09002 * 113.61608 * 254.61445 * 19 17 16 47 47 H 1.09001 * 109.46930 * 269.99977 * 26 25 24 48 48 H 1.09004 * 109.47222 * 29.99708 * 26 25 24 49 49 H 1.09001 * 109.46976 * 150.00111 * 26 25 24 50 50 H 1.09005 * 113.61471 * 139.98321 * 28 20 19 51 51 H 1.08996 * 113.61178 * 270.79663 * 28 20 19 52 52 H 1.08003 * 120.00591 * 179.74872 * 29 13 12 53 53 H 1.08002 * 119.89056 * 180.26202 * 30 29 13 54 54 H 1.08004 * 119.88278 * 179.76457 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2978 1.0923 0.0000 4 6 3.6348 0.6467 -0.0006 5 6 4.8648 1.5175 -0.0014 6 8 5.4540 1.5084 -1.3032 7 14 4.3915 3.2610 0.4539 8 6 3.6121 -0.7017 0.0042 9 6 4.8177 -1.6058 0.0105 10 7 2.3077 -1.1063 -0.0006 11 6 1.8643 -2.4366 -0.0001 12 6 1.1637 -2.9336 -1.0871 13 6 0.7251 -4.2579 -1.0822 14 6 -0.0237 -4.7956 -2.2382 15 8 -0.2577 -4.0837 -3.1951 16 7 -0.4468 -6.0753 -2.2307 17 6 -1.1882 -6.6082 -3.3763 18 1 -0.9907 -6.0640 -4.2999 19 6 -1.0779 -8.1348 -3.5253 20 6 -2.5684 -8.1293 -3.9034 21 1 -2.7477 -8.0001 -4.9708 22 6 -3.3449 -9.2787 -3.3146 23 7 -3.4850 -9.5455 -2.0472 24 7 -4.2139 -10.5968 -1.9100 25 6 -4.5559 -11.0421 -3.0857 26 6 -5.4026 -12.2563 -3.3678 27 8 -4.0150 -10.2199 -4.0004 28 6 -2.6874 -6.8255 -3.0967 29 6 0.9904 -5.0717 0.0203 30 6 1.6942 -4.5686 1.0957 31 6 2.1285 -3.2564 1.0902 32 1 -0.3633 -0.0004 1.0277 33 1 -0.3633 0.8903 -0.5135 34 1 -0.3634 -0.8898 -0.5143 35 1 1.9670 2.1205 0.0006 36 1 5.5817 1.1342 0.7246 37 1 6.2519 2.0497 -1.3776 38 1 3.4142 3.7950 -0.5284 39 1 3.8067 3.2885 1.8186 40 1 5.1127 -1.8253 -1.0156 41 1 5.6402 -1.1110 0.5270 42 1 4.5723 -2.5350 0.5247 43 1 0.9585 -2.2981 -1.9359 44 1 -0.2603 -6.6433 -1.4669 45 1 -0.8669 -8.6508 -2.5886 46 1 -0.4224 -8.4480 -4.3380 47 1 -4.7613 -13.1328 -3.4606 48 1 -6.1068 -12.4063 -2.5494 49 1 -5.9521 -12.1081 -4.2974 50 1 -3.3313 -6.0802 -3.5638 51 1 -2.9180 -6.9835 -2.0432 52 1 0.6491 -6.0964 0.0298 53 1 1.9023 -5.2009 1.9461 54 1 2.6755 -2.8672 1.9363 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_12335854.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:04:36 Heat of formation + Delta-G solvation = 77.925841 kcal Electronic energy + Delta-G solvation = -37531.176116 eV Core-core repulsion = 32631.433178 eV Total energy + Delta-G solvation = -4899.742937 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 409.183 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -45.34065 -43.03766 -41.59494 -40.21303 -39.11262 -37.63747 -37.28568 -35.29983 -34.40107 -33.89283 -33.58161 -32.36921 -30.64487 -30.27847 -29.62246 -27.31778 -27.05383 -26.92909 -25.31493 -24.85191 -23.76772 -23.69146 -23.26267 -21.97768 -21.25414 -20.97073 -20.06442 -18.77013 -18.58866 -18.52641 -18.28973 -17.69949 -17.47029 -17.30642 -16.84304 -16.49194 -16.14958 -16.02422 -15.73036 -15.53087 -15.43609 -15.22751 -15.15948 -14.81964 -14.66356 -14.31559 -14.30497 -14.24049 -13.95200 -13.85003 -13.72682 -13.67428 -13.62131 -13.60868 -13.45573 -13.32231 -13.19005 -13.02609 -12.99445 -12.75171 -12.72065 -12.51459 -12.39176 -12.36988 -11.97960 -11.94820 -11.90522 -11.25048 -10.55286 -10.50483 -10.38635 -10.15710 -10.14151 -9.66245 -9.00165 -4.94592 -0.50245 -0.11946 0.04062 0.93439 1.16445 1.22565 1.38390 1.52772 1.56815 1.60515 1.73058 1.98014 2.09918 2.51318 2.74611 3.15871 3.32007 3.39330 3.49507 3.55076 3.60933 3.62024 3.69115 3.71053 3.83321 3.86782 3.88295 3.99176 4.06770 4.09729 4.16653 4.26103 4.28646 4.33987 4.39957 4.45390 4.48629 4.50391 4.50711 4.51784 4.58894 4.63015 4.64167 4.65625 4.67617 4.77694 4.83237 4.84362 4.90399 4.94835 4.97153 4.99888 5.02244 5.07654 5.08579 5.18127 5.36410 5.48909 5.77824 5.96936 6.31545 6.34311 6.98611 7.02176 7.18267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.019 3.981 3 C -0.218 4.218 4 C -0.180 4.180 5 C -0.039 4.039 6 O -0.568 6.568 7 Si 0.785 3.215 8 C 0.045 3.955 9 C -0.079 4.079 10 N -0.404 5.404 11 C 0.095 3.905 12 C -0.066 4.066 13 C -0.132 4.132 14 C 0.562 3.438 15 O -0.575 6.575 16 N -0.697 5.697 17 C 0.127 3.873 18 H 0.119 0.881 19 C -0.116 4.116 20 C -0.019 4.019 21 H 0.149 0.851 22 C 0.175 3.825 23 N -0.310 5.310 24 N -0.331 5.331 25 C 0.168 3.832 26 C -0.061 4.061 27 O -0.231 6.231 28 C -0.134 4.134 29 C -0.064 4.064 30 C -0.098 4.098 31 C -0.083 4.083 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.130 0.870 36 H 0.087 0.913 37 H 0.398 0.602 38 H -0.307 1.307 39 H -0.298 1.298 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.076 0.924 43 H 0.115 0.885 44 H 0.417 0.583 45 H 0.100 0.900 46 H 0.108 0.892 47 H 0.118 0.882 48 H 0.116 0.884 49 H 0.113 0.887 50 H 0.086 0.914 51 H 0.094 0.906 52 H 0.169 0.831 53 H 0.177 0.823 54 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.801 -6.884 1.475 7.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 C -0.242 4.242 4 C -0.186 4.186 5 C -0.149 4.149 6 O -0.377 6.377 7 Si 0.693 3.307 8 C -0.065 4.065 9 C -0.136 4.136 10 N -0.079 5.079 11 C 0.006 3.994 12 C -0.086 4.086 13 C -0.136 4.136 14 C 0.350 3.650 15 O -0.455 6.455 16 N -0.348 5.348 17 C 0.022 3.978 18 H 0.137 0.863 19 C -0.155 4.155 20 C -0.039 4.039 21 H 0.166 0.834 22 C -0.036 4.036 23 N -0.155 5.155 24 N -0.178 5.178 25 C -0.043 4.043 26 C -0.118 4.118 27 O -0.111 6.111 28 C -0.173 4.173 29 C -0.082 4.082 30 C -0.116 4.116 31 C -0.102 4.102 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.147 0.853 36 H 0.105 0.895 37 H 0.249 0.751 38 H -0.236 1.236 39 H -0.225 1.225 40 H 0.088 0.912 41 H 0.115 0.885 42 H 0.095 0.905 43 H 0.133 0.867 44 H 0.256 0.744 45 H 0.119 0.881 46 H 0.126 0.874 47 H 0.136 0.864 48 H 0.134 0.866 49 H 0.131 0.869 50 H 0.105 0.895 51 H 0.113 0.887 52 H 0.186 0.814 53 H 0.195 0.805 54 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.491 -6.493 2.198 7.015 hybrid contribution -0.723 -0.310 -1.081 1.337 sum 0.768 -6.803 1.117 6.937 Atomic orbital electron populations 1.20398 0.86589 1.03646 1.03521 1.20691 0.94499 0.85020 1.08809 1.20660 0.93240 0.97496 1.12842 1.18991 0.93967 0.92669 1.12944 1.24082 0.93968 1.08384 0.88462 1.86489 1.47234 1.74242 1.29731 0.94984 0.84644 0.76116 0.74964 1.20727 0.84741 0.94156 1.06863 1.20394 0.92534 0.97562 1.03151 1.41485 1.05597 1.03371 1.57419 1.17696 1.02290 0.83353 0.96092 1.21099 0.95930 0.95141 0.96472 1.19738 1.03239 0.94235 0.96346 1.18384 0.78217 0.82303 0.86100 1.90796 1.58537 1.59245 1.36901 1.45696 1.56087 1.11361 1.21697 1.22442 0.90490 0.94224 0.90618 0.86273 1.23438 0.92948 0.94544 1.04555 1.21204 0.94038 0.86602 1.02091 0.83375 1.28208 0.95453 0.92909 0.87076 1.74215 1.14968 1.09893 1.16454 1.74375 1.13148 1.06984 1.23252 1.28975 0.96956 0.96162 0.82167 1.20709 0.97431 0.87301 1.06405 1.84812 1.52579 1.33255 1.40504 1.23624 0.97604 0.94527 1.01527 1.21814 0.94769 1.00577 0.91039 1.21461 0.96275 0.94220 0.99630 1.21655 0.98129 0.94488 0.95964 0.89793 0.89430 0.91747 0.85253 0.89471 0.75105 1.23604 1.22543 0.91172 0.88474 0.90537 0.86740 0.74400 0.88142 0.87373 0.86355 0.86550 0.86891 0.89525 0.88726 0.81380 0.80541 0.83673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.08 71.24 0.72 0.22 16 2 C 0.02 0.20 6.81 41.04 0.28 0.48 16 3 C -0.22 -2.81 9.27 22.15 0.21 -2.60 16 4 C -0.18 -1.95 5.39 -19.98 -0.11 -2.06 16 5 C -0.04 -0.17 2.60 71.24 0.18 0.02 16 6 O -0.57 -2.51 12.86 -148.98 -1.92 -4.42 16 7 Si 0.79 2.35 30.84 68.60 2.12 4.47 16 8 C 0.04 0.40 6.81 41.04 0.28 0.68 16 9 C -0.08 -0.19 9.87 71.23 0.70 0.51 16 10 N -0.40 -3.65 2.79 -320.36 -0.89 -4.54 16 11 C 0.09 0.46 5.02 38.04 0.19 0.65 16 12 C -0.07 -0.43 8.32 22.65 0.19 -0.24 16 13 C -0.13 -0.23 5.87 -20.10 -0.12 -0.35 16 14 C 0.56 2.40 7.77 86.79 0.67 3.07 16 15 O -0.57 -7.59 15.95 -3.85 -0.06 -7.65 16 16 N -0.70 2.09 5.31 -442.47 -2.35 -0.26 16 17 C 0.13 -0.45 4.25 45.61 0.19 -0.26 16 18 H 0.12 -0.15 7.47 -2.39 -0.02 -0.17 16 19 C -0.12 0.77 7.37 31.12 0.23 1.00 16 20 C -0.02 0.08 4.29 -11.01 -0.05 0.03 16 21 H 0.15 -1.21 8.14 -2.39 -0.02 -1.23 16 22 C 0.18 0.50 7.53 88.34 0.67 1.17 16 23 N -0.31 -2.42 11.85 -165.51 -1.96 -4.38 16 24 N -0.33 -2.90 12.22 -165.50 -2.02 -4.92 16 25 C 0.17 0.44 8.48 88.34 0.75 1.19 16 26 C -0.06 0.46 10.51 71.24 0.75 1.21 16 27 O -0.23 -0.76 10.87 -3.60 -0.04 -0.80 16 28 C -0.13 0.37 7.43 31.21 0.23 0.60 16 29 C -0.06 0.37 9.54 22.54 0.21 0.58 16 30 C -0.10 0.65 10.02 22.21 0.22 0.87 16 31 C -0.08 0.11 8.74 22.44 0.20 0.31 16 32 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 34 H 0.06 0.40 6.85 -2.39 -0.02 0.39 16 35 H 0.13 1.65 6.55 -2.91 -0.02 1.63 16 36 H 0.09 -0.06 7.49 -2.39 -0.02 -0.08 16 37 H 0.40 -2.73 8.74 -74.05 -0.65 -3.38 16 38 H -0.31 -3.54 7.06 99.48 0.70 -2.84 16 39 H -0.30 -2.69 7.11 99.48 0.71 -1.98 16 40 H 0.07 0.27 8.14 -2.38 -0.02 0.25 16 41 H 0.10 -0.08 7.50 -2.39 -0.02 -0.09 16 42 H 0.08 -0.05 6.83 -2.39 -0.02 -0.07 16 43 H 0.11 1.35 7.65 -2.91 -0.02 1.32 16 44 H 0.42 -3.66 6.76 -92.71 -0.63 -4.28 16 45 H 0.10 -0.63 8.07 -2.39 -0.02 -0.65 16 46 H 0.11 -1.01 8.14 -2.39 -0.02 -1.03 16 47 H 0.12 -1.27 8.14 -2.39 -0.02 -1.29 16 48 H 0.12 -1.04 8.14 -2.39 -0.02 -1.06 16 49 H 0.11 -1.25 8.14 -2.39 -0.02 -1.27 16 50 H 0.09 -0.20 8.14 -2.38 -0.02 -0.22 16 51 H 0.09 -0.04 7.79 -2.39 -0.02 -0.06 16 52 H 0.17 -2.17 6.40 -2.91 -0.02 -2.19 16 53 H 0.18 -2.32 8.06 -2.91 -0.02 -2.35 16 54 H 0.15 -0.49 8.06 -2.91 -0.02 -0.51 16 Total: 0.00 -35.14 450.30 -0.79 -35.93 By element: Atomic # 1 Polarization: -20.25 SS G_CDS: -0.27 Total: -20.52 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 6.60 Total: 7.10 kcal Atomic # 7 Polarization: -6.88 SS G_CDS: -7.23 Total: -14.11 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -2.02 Total: -12.87 kcal Atomic # 14 Polarization: 2.35 SS G_CDS: 2.12 Total: 4.47 kcal Total: -35.14 -0.79 -35.93 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_12335854.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.856 kcal (2) G-P(sol) polarization free energy of solvation -35.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds