Wall clock time and date at job start Sun Mar 7 2021 04:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34806 * 125.89973 * 2 1 4 4 C 1.40991 * 107.48289 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.25578 * 180.02562 * 4 3 2 6 6 O 1.42900 * 109.47158 * 254.97387 * 5 4 3 7 7 Si 1.86295 * 109.47289 * 14.97677 * 5 4 3 8 8 C 1.34808 * 107.48612 * 0.02562 * 4 3 2 9 9 C 1.50706 * 125.89985 * 179.97438 * 8 4 3 10 10 N 1.36646 * 108.19382 * 0.22723 * 8 4 3 11 11 C 1.39665 * 125.67951 * 179.73272 * 10 8 4 12 12 C 1.40202 * 120.15804 * 269.72288 * 11 10 8 13 13 C 1.47572 * 120.18987 * 0.02562 * 12 11 10 14 14 O 1.21585 * 119.99966 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00097 * 179.97438 * 13 12 11 16 16 C 1.46501 * 120.00250 * 179.97438 * 15 13 12 17 17 H 1.09004 * 112.84612 * 336.20075 * 16 15 13 18 18 C 1.53774 * 113.61159 * 107.50254 * 16 15 13 19 19 C 1.53785 * 87.08298 * 139.98132 * 18 16 15 20 20 H 1.09000 * 113.61160 * 89.11345 * 19 18 16 21 21 C 1.50696 * 113.69232 * 220.00910 * 19 18 16 22 22 N 1.30269 * 126.28561 * 37.55662 * 21 19 18 23 23 N 1.28663 * 109.38170 * 179.97438 * 22 21 19 24 24 C 1.30277 * 109.38485 * 0.02562 * 23 22 21 25 25 C 1.50694 * 126.28502 * 180.02562 * 24 23 22 26 26 O 1.34367 * 126.27650 * 217.24944 * 21 19 18 27 27 C 1.53781 * 113.61524 * 205.00106 * 16 15 13 28 28 C 1.39660 * 119.61380 * 179.75479 * 12 11 10 29 29 C 1.37822 * 119.91779 * 0.56114 * 28 12 11 30 30 C 1.38538 * 120.31280 * 359.69005 * 29 28 12 31 31 C 1.38067 * 120.38969 * 0.02562 * 30 29 28 32 32 H 1.08993 * 109.47423 * 89.97316 * 1 2 3 33 33 H 1.09004 * 109.46761 * 209.97528 * 1 2 3 34 34 H 1.09003 * 109.47029 * 329.97035 * 1 2 3 35 35 H 1.07993 * 126.25886 * 0.02562 * 3 2 1 36 36 H 1.09003 * 109.47480 * 134.97425 * 5 4 3 37 37 H 0.96702 * 113.99749 * 60.00368 * 6 5 4 38 38 H 1.48506 * 110.00219 * 179.97438 * 7 5 4 39 39 H 1.48503 * 109.99829 * 301.31991 * 7 5 4 40 40 H 1.08999 * 109.46995 * 90.02574 * 9 8 4 41 41 H 1.08994 * 109.46790 * 210.02260 * 9 8 4 42 42 H 1.08997 * 109.47305 * 330.02701 * 9 8 4 43 43 H 0.97005 * 119.99933 * 0.02562 * 15 13 12 44 44 H 1.09005 * 113.61987 * 254.52939 * 18 16 15 45 45 H 1.08998 * 113.61936 * 25.43658 * 18 16 15 46 46 H 1.08997 * 109.47395 * 89.97552 * 25 24 23 47 47 H 1.09006 * 109.47044 * 209.97628 * 25 24 23 48 48 H 1.09000 * 109.47029 * 329.96814 * 25 24 23 49 49 H 1.08998 * 113.61517 * 334.56710 * 27 16 15 50 50 H 1.09004 * 113.61247 * 105.47595 * 27 16 15 51 51 H 1.08002 * 120.04186 * 180.25509 * 28 12 11 52 52 H 1.08006 * 119.84483 * 179.70265 * 29 28 12 53 53 H 1.08001 * 119.80272 * 179.97438 * 30 29 28 54 54 H 1.08001 * 119.95759 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2975 1.0920 0.0000 4 6 3.6352 0.6466 -0.0006 5 6 4.8647 1.5180 -0.0003 6 8 5.4550 1.5093 -1.3016 7 14 4.3903 3.2611 0.4549 8 6 3.6133 -0.7013 -0.0015 9 6 4.8196 -1.6048 -0.0030 10 7 2.3084 -1.1069 -0.0067 11 6 1.8672 -2.4320 -0.0144 12 6 1.6420 -3.0922 -1.2306 13 6 1.8703 -2.3912 -2.5089 14 8 2.2544 -1.2376 -2.5096 15 7 1.6531 -3.0298 -3.6758 16 6 1.8792 -2.3337 -4.9449 17 1 1.8128 -1.2498 -4.8508 18 6 3.1328 -2.8132 -5.6955 19 6 2.3069 -2.6986 -6.9877 20 1 2.3586 -1.7142 -7.4530 21 6 2.5505 -3.8207 -7.9636 22 7 2.7512 -5.0726 -7.6644 23 7 2.9226 -5.7479 -8.7461 24 6 2.8375 -4.9498 -9.7722 25 6 2.9781 -5.3412 -11.2206 26 8 2.5947 -3.7145 -9.3023 27 6 1.0577 -2.9021 -6.1141 28 6 1.2058 -4.4189 -1.2251 29 6 0.9886 -5.0662 -0.0279 30 6 1.2071 -4.4090 1.1720 31 6 1.6440 -3.0993 1.1816 32 1 -0.3634 0.0005 -1.0276 33 1 -0.3633 -0.8903 0.5135 34 1 -0.3633 0.8897 0.5143 35 1 1.9666 2.1200 0.0004 36 1 5.5814 1.1350 0.7263 37 1 4.8724 1.8381 -1.9999 38 1 5.5943 4.1304 0.4594 39 1 3.3896 3.7835 -0.5099 40 1 5.1108 -1.8236 1.0244 41 1 4.5766 -2.5343 -0.5176 42 1 5.6437 -1.1097 -0.5166 43 1 1.3463 -3.9500 -3.6753 44 1 3.9661 -2.1122 -5.6463 45 1 3.4232 -3.8352 -5.4523 46 1 2.0005 -5.6098 -11.6210 47 1 3.3843 -4.5024 -11.7859 48 1 3.6513 -6.1946 -11.3026 49 1 0.7809 -3.9484 -5.9853 50 1 0.2158 -2.2728 -6.4028 51 1 1.0341 -4.9355 -2.1579 52 1 0.6466 -6.0907 -0.0250 53 1 1.0339 -4.9240 2.1054 54 1 1.8125 -2.5939 2.1210 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_12335856.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:04:41 Heat of formation + Delta-G solvation = 89.849109 kcal Electronic energy + Delta-G solvation = -39588.525974 eV Core-core repulsion = 34689.300068 eV Total energy + Delta-G solvation = -4899.225906 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 409.183 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -45.36546 -42.84804 -41.34459 -40.10899 -38.98221 -37.79924 -37.31091 -35.15669 -34.14259 -33.70389 -33.56076 -32.24172 -30.42823 -30.09424 -29.64368 -27.32954 -26.97017 -26.88318 -25.18922 -24.57822 -23.88862 -23.58601 -23.18739 -21.75150 -21.22996 -20.82426 -20.23039 -18.85220 -18.63889 -18.53936 -17.85084 -17.56241 -17.50307 -16.83897 -16.61420 -16.29161 -16.07967 -15.99693 -15.77336 -15.54386 -15.37771 -15.32167 -14.89254 -14.71983 -14.42006 -14.31217 -14.26849 -14.11859 -14.03844 -13.81105 -13.71355 -13.63150 -13.55495 -13.42458 -13.33749 -13.23556 -13.09181 -13.02521 -12.89344 -12.75408 -12.69921 -12.47798 -12.35685 -12.12180 -11.98484 -11.92943 -11.64758 -11.01693 -10.53245 -10.46498 -10.30392 -10.11886 -10.00657 -9.51670 -8.64915 -4.85516 -0.41183 0.01430 0.05761 1.14161 1.20156 1.23471 1.45129 1.68823 1.73978 1.88324 1.94950 2.01516 2.07399 2.60813 2.72297 3.13768 3.29528 3.41978 3.55631 3.58201 3.59780 3.65130 3.66048 3.79367 3.96171 3.97743 4.06863 4.19075 4.21050 4.25072 4.26474 4.34494 4.36516 4.42444 4.45087 4.50023 4.51987 4.54806 4.60653 4.62255 4.65601 4.68215 4.70458 4.71600 4.74669 4.77324 4.80355 4.97774 4.98337 5.01355 5.02066 5.07287 5.19911 5.24911 5.30131 5.40323 5.46772 5.64584 6.14406 6.28796 6.38700 6.55841 6.65805 7.09878 7.15794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.033 3.967 3 C -0.204 4.204 4 C -0.204 4.204 5 C -0.048 4.048 6 O -0.553 6.553 7 Si 0.780 3.220 8 C 0.055 3.945 9 C -0.077 4.077 10 N -0.390 5.390 11 C 0.145 3.855 12 C -0.146 4.146 13 C 0.548 3.452 14 O -0.541 6.541 15 N -0.705 5.705 16 C 0.135 3.865 17 H 0.115 0.885 18 C -0.132 4.132 19 C -0.018 4.018 20 H 0.147 0.853 21 C 0.175 3.825 22 N -0.310 5.310 23 N -0.330 5.330 24 C 0.168 3.832 25 C -0.061 4.061 26 O -0.232 6.232 27 C -0.116 4.116 28 C -0.077 4.077 29 C -0.108 4.108 30 C -0.076 4.076 31 C -0.121 4.121 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.141 0.859 36 H 0.111 0.889 37 H 0.379 0.621 38 H -0.303 1.303 39 H -0.292 1.292 40 H 0.083 0.917 41 H 0.050 0.950 42 H 0.074 0.926 43 H 0.412 0.588 44 H 0.081 0.919 45 H 0.091 0.909 46 H 0.119 0.881 47 H 0.112 0.888 48 H 0.116 0.884 49 H 0.098 0.902 50 H 0.107 0.893 51 H 0.157 0.843 52 H 0.167 0.833 53 H 0.164 0.836 54 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.017 -4.844 -0.302 7.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.076 4.076 3 C -0.228 4.228 4 C -0.210 4.210 5 C -0.157 4.157 6 O -0.360 6.360 7 Si 0.686 3.314 8 C -0.055 4.055 9 C -0.134 4.134 10 N -0.064 5.064 11 C 0.054 3.946 12 C -0.150 4.150 13 C 0.335 3.665 14 O -0.418 6.418 15 N -0.357 5.357 16 C 0.030 3.970 17 H 0.133 0.867 18 C -0.172 4.172 19 C -0.039 4.039 20 H 0.165 0.835 21 C -0.036 4.036 22 N -0.156 5.156 23 N -0.177 5.177 24 C -0.043 4.043 25 C -0.118 4.118 26 O -0.112 6.112 27 C -0.154 4.154 28 C -0.096 4.096 29 C -0.126 4.126 30 C -0.094 4.094 31 C -0.140 4.140 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.159 0.841 36 H 0.129 0.871 37 H 0.227 0.773 38 H -0.232 1.232 39 H -0.219 1.219 40 H 0.101 0.899 41 H 0.069 0.931 42 H 0.093 0.907 43 H 0.250 0.750 44 H 0.100 0.900 45 H 0.110 0.890 46 H 0.137 0.863 47 H 0.131 0.869 48 H 0.135 0.865 49 H 0.117 0.883 50 H 0.125 0.875 51 H 0.174 0.826 52 H 0.184 0.816 53 H 0.182 0.818 54 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.229 -4.849 0.457 7.146 hybrid contribution -0.002 0.418 -2.195 2.235 sum -5.231 -4.432 -1.738 7.073 Atomic orbital electron populations 1.20283 0.87241 1.03812 1.02140 1.20475 0.93859 0.84948 1.08282 1.20585 0.92197 0.97724 1.12316 1.19487 0.94737 0.92771 1.14012 1.24491 0.94720 1.09725 0.86795 1.86496 1.44477 1.87300 1.17723 0.93916 0.76685 0.71800 0.89006 1.20213 0.84153 0.94011 1.07109 1.20228 0.93503 0.96950 1.02731 1.41003 1.05270 1.02871 1.57235 1.17813 0.99778 0.83637 0.93333 1.20231 1.06332 0.96298 0.92146 1.18427 0.77473 0.86181 0.84419 1.90901 1.45532 1.17722 1.87683 1.45736 1.68413 1.17043 1.04509 1.22258 0.95171 0.98390 0.81228 0.86711 1.23546 0.98215 1.03452 0.91949 1.21195 1.00162 0.93432 0.89071 0.83546 1.28180 0.98707 0.96759 0.79980 1.74220 1.17778 1.02200 1.21367 1.74369 1.20006 1.28300 0.95003 1.28997 0.96438 0.77272 1.01556 1.20709 1.06700 1.04819 0.79562 1.84816 1.68456 1.34935 1.22967 1.23425 0.96155 1.03680 0.92170 1.21598 0.95710 0.91467 1.00852 1.21673 0.97863 1.01887 0.91185 1.21693 0.94508 0.92790 1.00448 1.21496 0.99765 0.96046 0.96658 0.92169 0.91639 0.88689 0.84095 0.87137 0.77309 1.23175 1.21897 0.89890 0.93107 0.90724 0.74998 0.89989 0.88999 0.86319 0.86895 0.86524 0.88342 0.87488 0.82590 0.81572 0.81808 0.84266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.24 10.08 71.24 0.72 0.48 16 2 C 0.03 0.27 5.99 41.02 0.25 0.52 16 3 C -0.20 -1.85 9.27 22.16 0.21 -1.64 16 4 C -0.20 -1.96 5.35 -19.98 -0.11 -2.06 16 5 C -0.05 -0.37 2.49 71.24 0.18 -0.19 16 6 O -0.55 -6.08 12.88 -148.98 -1.92 -8.00 16 7 Si 0.78 3.90 30.86 68.60 2.12 6.02 16 8 C 0.06 0.54 6.02 41.02 0.25 0.79 16 9 C -0.08 -0.54 9.88 71.24 0.70 0.17 16 10 N -0.39 -3.06 1.44 -319.53 -0.46 -3.52 16 11 C 0.14 0.56 4.52 38.50 0.17 0.73 16 12 C -0.15 -0.29 5.89 -19.99 -0.12 -0.41 16 13 C 0.55 2.80 7.77 86.71 0.67 3.47 16 14 O -0.54 -6.82 13.30 -3.98 -0.05 -6.87 16 15 N -0.70 0.83 5.31 -443.17 -2.35 -1.52 16 16 C 0.13 -0.24 4.24 45.52 0.19 -0.04 16 17 H 0.12 0.11 7.46 -2.38 -0.02 0.09 16 18 C -0.13 0.08 7.42 31.12 0.23 0.31 16 19 C -0.02 0.04 4.29 -11.01 -0.05 0.00 16 20 H 0.15 -0.92 8.14 -2.39 -0.02 -0.94 16 21 C 0.18 0.75 7.54 88.34 0.67 1.42 16 22 N -0.31 -2.83 11.84 -165.51 -1.96 -4.79 16 23 N -0.33 -3.22 12.22 -165.50 -2.02 -5.24 16 24 C 0.17 0.60 8.48 88.34 0.75 1.35 16 25 C -0.06 0.42 10.51 71.23 0.75 1.17 16 26 O -0.23 -1.02 10.87 -3.75 -0.04 -1.06 16 27 C -0.12 0.57 7.38 31.12 0.23 0.80 16 28 C -0.08 0.38 9.53 22.51 0.21 0.59 16 29 C -0.11 0.83 10.02 22.24 0.22 1.05 16 30 C -0.08 0.48 10.03 22.30 0.22 0.71 16 31 C -0.12 0.13 9.96 22.36 0.22 0.35 16 32 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.06 0.10 7.84 -2.38 -0.02 0.08 16 34 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.14 0.95 6.52 -2.91 -0.02 0.93 16 36 H 0.11 0.63 7.96 -2.39 -0.02 0.61 16 37 H 0.38 2.86 8.70 -74.06 -0.64 2.22 16 38 H -0.30 -3.37 7.11 99.48 0.71 -2.67 16 39 H -0.29 -2.81 7.01 99.48 0.70 -2.11 16 40 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 41 H 0.05 0.39 7.83 -2.39 -0.02 0.37 16 42 H 0.07 0.66 7.87 -2.39 -0.02 0.64 16 43 H 0.41 -2.52 6.76 -92.70 -0.63 -3.14 16 44 H 0.08 0.04 8.14 -2.38 -0.02 0.02 16 45 H 0.09 0.18 7.79 -2.39 -0.02 0.16 16 46 H 0.12 -1.20 8.14 -2.39 -0.02 -1.22 16 47 H 0.11 -1.17 8.14 -2.38 -0.02 -1.19 16 48 H 0.12 -0.96 8.14 -2.39 -0.02 -0.98 16 49 H 0.10 -0.43 8.07 -2.39 -0.02 -0.45 16 50 H 0.11 -0.82 8.14 -2.38 -0.02 -0.84 16 51 H 0.16 -1.60 6.40 -2.91 -0.02 -1.62 16 52 H 0.17 -2.20 8.06 -2.91 -0.02 -2.22 16 53 H 0.16 -1.91 8.06 -2.91 -0.02 -1.93 16 54 H 0.14 -0.28 8.06 -2.91 -0.02 -0.30 16 Total: 0.00 -29.07 450.16 -0.39 -29.46 By element: Atomic # 1 Polarization: -13.74 SS G_CDS: -0.28 Total: -14.02 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 6.57 Total: 9.55 kcal Atomic # 7 Polarization: -8.28 SS G_CDS: -6.79 Total: -15.08 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -2.01 Total: -15.94 kcal Atomic # 14 Polarization: 3.90 SS G_CDS: 2.12 Total: 6.02 kcal Total: -29.07 -0.39 -29.46 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_12335856.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.313 kcal (2) G-P(sol) polarization free energy of solvation -29.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds