Wall clock time and date at job start Sun Mar 7 2021 04:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30281 * 126.28411 * 2 1 4 4 N 1.28667 * 109.37809 * 180.02562 * 3 2 1 5 5 C 1.30266 * 109.38401 * 359.97438 * 4 3 2 6 6 C 1.50706 * 126.28158 * 179.97438 * 5 4 3 7 7 H 1.08996 * 112.84772 * 191.22078 * 6 5 4 8 8 C 1.53775 * 113.61422 * 322.53335 * 6 5 4 9 9 C 1.53776 * 87.08380 * 139.97826 * 8 6 5 10 10 H 1.09003 * 113.61666 * 89.11290 * 9 8 6 11 11 N 1.46494 * 113.61757 * 220.01930 * 9 8 6 12 12 C 1.34783 * 120.00175 * 252.49268 * 11 9 8 13 13 O 1.21695 * 119.99980 * 0.02562 * 12 11 9 14 14 C 1.46428 * 120.00189 * 179.97438 * 12 11 9 15 15 C 1.34806 * 119.99896 * 180.02562 * 14 12 11 16 16 C 1.47209 * 119.99952 * 180.02562 * 15 14 12 17 17 C 1.39838 * 120.17186 * 359.72032 * 16 15 14 18 18 C 1.37887 * 119.83011 * 179.76915 * 17 16 15 19 19 C 1.38406 * 120.16629 * 0.53446 * 18 17 16 20 20 C 1.50702 * 119.82531 * 179.71983 * 19 18 17 21 21 O 1.42900 * 109.47196 * 244.97922 * 20 19 18 22 22 Si 1.86296 * 109.47065 * 4.97764 * 20 19 18 23 23 C 1.38400 * 120.34656 * 359.69904 * 19 18 17 24 24 C 1.37894 * 120.17062 * 0.04245 * 23 19 18 25 25 C 1.53781 * 113.61083 * 60.02995 * 6 5 4 26 26 O 1.34358 * 107.43697 * 0.24295 * 5 4 3 27 27 H 1.08996 * 109.47198 * 90.02543 * 1 2 3 28 28 H 1.08996 * 109.47160 * 210.02542 * 1 2 3 29 29 H 1.09004 * 109.47079 * 330.02709 * 1 2 3 30 30 H 1.09007 * 113.61519 * 254.52563 * 8 6 5 31 31 H 1.08996 * 113.61809 * 25.42921 * 8 6 5 32 32 H 0.97004 * 120.00347 * 72.49414 * 11 9 8 33 33 H 1.07996 * 120.00022 * 0.02562 * 14 12 11 34 34 H 1.07996 * 120.00081 * 0.02562 * 15 14 12 35 35 H 1.08006 * 120.08228 * 0.02562 * 17 16 15 36 36 H 1.07998 * 119.91756 * 180.25538 * 18 17 16 37 37 H 1.09003 * 109.46859 * 124.97832 * 20 19 18 38 38 H 0.96698 * 113.99985 * 180.02562 * 21 20 19 39 39 H 1.48504 * 110.00085 * 299.99811 * 22 20 19 40 40 H 1.48499 * 110.00270 * 61.32216 * 22 20 19 41 41 H 1.07999 * 119.91276 * 180.02562 * 23 19 18 42 42 H 1.08003 * 120.08470 * 179.97438 * 24 23 19 43 43 H 1.09003 * 113.61408 * 334.56504 * 25 6 5 44 44 H 1.08996 * 113.61907 * 105.46876 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2780 1.0502 0.0000 4 7 3.5090 0.6760 -0.0005 5 6 3.5653 -0.6254 -0.0004 6 6 4.8176 -1.4639 -0.0014 7 1 4.6210 -2.5181 -0.1965 8 6 5.9509 -0.8775 -0.8596 9 6 6.9158 -1.3181 0.2536 10 1 7.2941 -2.3326 0.1274 11 7 7.9751 -0.3451 0.5313 12 6 9.2421 -0.6007 0.1492 13 8 9.5061 -1.6397 -0.4269 14 6 10.3009 0.3722 0.4262 15 6 11.5680 0.1167 0.0436 16 6 12.6324 1.0945 0.3226 17 6 12.3322 2.2921 0.9791 18 6 13.3356 3.2009 1.2411 19 6 14.6352 2.9351 0.8463 20 6 15.7247 3.9366 1.1310 21 8 16.2339 4.4498 -0.1016 22 14 15.0319 5.3358 2.1472 23 6 14.9395 1.7542 0.1917 24 6 13.9480 0.8331 -0.0728 25 6 5.7222 -1.2214 1.2184 26 8 2.3021 -1.0831 -0.0051 27 1 -0.3633 -0.0005 -1.0276 28 1 -0.3633 -0.8897 0.5142 29 1 -0.3633 0.8903 0.5134 30 1 6.1020 -1.4039 -1.8021 31 1 5.8907 0.2039 -0.9826 32 1 7.7648 0.4833 0.9901 33 1 10.0666 1.2944 0.9371 34 1 11.8022 -0.8053 -0.4677 35 1 11.3177 2.5028 1.2839 36 1 13.1060 4.1244 1.7518 37 1 16.5297 3.4507 1.6825 38 1 16.9405 5.1013 0.0055 39 1 13.9335 6.0064 1.4063 40 1 14.5280 4.8198 3.4453 41 1 15.9561 1.5538 -0.1129 42 1 14.1869 -0.0878 -0.5840 43 1 5.5995 -0.2340 1.6636 44 1 5.6887 -2.0254 1.9536 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_12360594.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:05:00 Heat of formation + Delta-G solvation = 40.991449 kcal Electronic energy + Delta-G solvation = -27210.758342 eV Core-core repulsion = 23097.904858 eV Total energy + Delta-G solvation = -4112.853484 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.35427 -41.33085 -40.66651 -39.56652 -37.72715 -37.29956 -35.22783 -34.95441 -33.60597 -32.36453 -31.44188 -29.69793 -27.58858 -26.93263 -26.56668 -24.51765 -24.13664 -23.66333 -23.05062 -21.96534 -21.19991 -20.24335 -18.80880 -18.60608 -18.49715 -18.37694 -17.52945 -17.38355 -16.75142 -16.49825 -16.32589 -15.96814 -15.74648 -15.53281 -15.21381 -15.16344 -14.68560 -14.37364 -14.28968 -14.09130 -13.87123 -13.76701 -13.68553 -13.62947 -13.60433 -13.45924 -13.05063 -13.01220 -12.72903 -12.40889 -12.36358 -12.05797 -11.97320 -11.96164 -11.91051 -11.42042 -11.11844 -10.52134 -10.31695 -10.18166 -10.13157 -9.34863 -4.95300 -0.66034 0.02818 0.23028 0.78051 1.15844 1.21468 1.28676 1.63047 1.94904 2.12778 2.13537 2.66998 2.74594 3.16915 3.32873 3.36243 3.44141 3.49953 3.63227 3.63598 3.69443 3.73443 3.89132 3.97507 4.08081 4.11164 4.20392 4.27538 4.29878 4.39456 4.46371 4.48917 4.50640 4.58808 4.63446 4.66839 4.70433 4.77697 4.83759 4.84916 4.96476 4.99546 5.03090 5.08161 5.25559 5.34240 5.45627 5.48334 5.75934 6.45608 6.88427 7.12617 7.17086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.168 3.832 3 N -0.332 5.332 4 N -0.313 5.313 5 C 0.176 3.824 6 C -0.019 4.019 7 H 0.150 0.850 8 C -0.134 4.134 9 C 0.128 3.872 10 H 0.120 0.880 11 N -0.703 5.703 12 C 0.548 3.452 13 O -0.584 6.584 14 C -0.212 4.212 15 C -0.017 4.017 16 C -0.082 4.082 17 C -0.098 4.098 18 C -0.145 4.145 19 C -0.081 4.081 20 C -0.082 4.082 21 O -0.564 6.564 22 Si 0.772 3.228 23 C -0.102 4.102 24 C -0.096 4.096 25 C -0.117 4.117 26 O -0.231 6.231 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.417 0.583 33 H 0.155 0.845 34 H 0.132 0.868 35 H 0.151 0.849 36 H 0.121 0.879 37 H 0.096 0.904 38 H 0.404 0.596 39 H -0.297 1.297 40 H -0.288 1.288 41 H 0.143 0.857 42 H 0.149 0.851 43 H 0.096 0.904 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.411 0.504 3.708 3.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.043 4.043 3 N -0.179 5.179 4 N -0.158 5.158 5 C -0.036 4.036 6 C -0.039 4.039 7 H 0.168 0.832 8 C -0.173 4.173 9 C 0.023 3.977 10 H 0.138 0.862 11 N -0.353 5.353 12 C 0.338 3.662 13 O -0.466 6.466 14 C -0.233 4.233 15 C -0.037 4.037 16 C -0.082 4.082 17 C -0.116 4.116 18 C -0.162 4.162 19 C -0.081 4.081 20 C -0.192 4.192 21 O -0.374 6.374 22 Si 0.678 3.322 23 C -0.120 4.120 24 C -0.114 4.114 25 C -0.156 4.156 26 O -0.111 6.111 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.135 0.865 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.254 0.746 33 H 0.172 0.828 34 H 0.150 0.850 35 H 0.168 0.832 36 H 0.138 0.862 37 H 0.114 0.886 38 H 0.255 0.745 39 H -0.225 1.225 40 H -0.215 1.215 41 H 0.161 0.839 42 H 0.167 0.833 43 H 0.114 0.886 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.197 0.972 3.471 3.610 hybrid contribution -0.724 -1.147 -0.138 1.363 sum -0.921 -0.175 3.333 3.463 Atomic orbital electron populations 1.20709 0.76883 1.07313 1.06868 1.29003 0.99381 0.78840 0.97073 1.74373 0.96515 1.27084 1.19884 1.74225 1.12731 1.10271 1.18596 1.28241 0.85423 0.91394 0.98536 1.21241 0.82650 0.99120 1.00871 0.83193 1.23572 0.92351 1.02536 0.98884 1.22349 0.85335 0.94628 0.95416 0.86206 1.45748 1.06798 1.23112 1.59675 1.18620 0.83613 0.86185 0.77770 1.90810 1.83441 1.28631 1.43745 1.23017 0.92854 1.01146 1.06245 1.22368 0.91672 0.96858 0.92779 1.19141 0.93797 0.94727 1.00542 1.21562 1.00178 0.92692 0.97150 1.21006 0.93247 0.99746 1.02250 1.19928 0.93860 0.95877 0.98480 1.24864 0.98901 1.02505 0.92904 1.86442 1.58767 1.63491 1.28695 0.94338 0.82805 0.80280 0.74744 1.21190 1.00688 0.92784 0.97350 1.21739 0.91648 1.00059 0.97937 1.23430 0.91441 1.04917 0.95831 1.84811 1.17724 1.38666 1.69881 0.86517 0.86713 0.86488 0.89436 0.89099 0.74603 0.82777 0.84985 0.83172 0.86194 0.88575 0.74466 1.22463 1.21498 0.83899 0.83318 0.88600 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.40 10.51 71.23 0.75 1.15 16 2 C 0.17 0.65 8.48 88.34 0.75 1.40 16 3 N -0.33 -3.45 12.22 -165.50 -2.02 -5.47 16 4 N -0.31 -3.07 11.83 -165.51 -1.96 -5.03 16 5 C 0.18 0.79 7.53 88.34 0.67 1.46 16 6 C -0.02 0.05 4.29 -11.01 -0.05 0.00 16 7 H 0.15 -1.06 8.14 -2.39 -0.02 -1.08 16 8 C -0.13 0.13 7.42 31.12 0.23 0.36 16 9 C 0.13 -0.24 4.24 45.52 0.19 -0.04 16 10 H 0.12 -0.01 7.47 -2.39 -0.02 -0.03 16 11 N -0.70 0.69 5.35 -444.26 -2.38 -1.68 16 12 C 0.55 2.55 7.74 86.37 0.67 3.22 16 13 O -0.58 -7.38 15.83 -4.33 -0.07 -7.44 16 14 C -0.21 -0.22 9.41 23.62 0.22 0.01 16 15 C -0.02 -0.05 9.46 23.84 0.23 0.18 16 16 C -0.08 -0.27 5.87 -20.15 -0.12 -0.39 16 17 C -0.10 -0.27 9.41 22.57 0.21 -0.06 16 18 C -0.15 -0.69 8.65 22.23 0.19 -0.49 16 19 C -0.08 -0.35 5.39 -19.79 -0.11 -0.46 16 20 C -0.08 0.07 2.79 71.24 0.20 0.27 16 21 O -0.56 0.25 12.81 -148.98 -1.91 -1.66 16 22 Si 0.77 -1.74 29.83 68.60 2.05 0.31 16 23 C -0.10 -0.33 9.66 22.23 0.21 -0.12 16 24 C -0.10 -0.25 9.80 22.57 0.22 -0.03 16 25 C -0.12 0.55 7.38 31.12 0.23 0.78 16 26 O -0.23 -1.04 10.87 -3.61 -0.04 -1.08 16 27 H 0.12 -1.11 8.14 -2.39 -0.02 -1.12 16 28 H 0.11 -1.21 8.14 -2.39 -0.02 -1.23 16 29 H 0.12 -0.96 8.14 -2.39 -0.02 -0.97 16 30 H 0.09 -0.09 8.14 -2.38 -0.02 -0.11 16 31 H 0.09 0.18 7.78 -2.39 -0.02 0.16 16 32 H 0.42 -2.38 8.71 -92.71 -0.81 -3.18 16 33 H 0.15 -0.72 6.07 -2.91 -0.02 -0.74 16 34 H 0.13 0.54 7.52 -2.91 -0.02 0.52 16 35 H 0.15 -0.36 6.17 -2.91 -0.02 -0.37 16 36 H 0.12 0.47 4.84 -2.91 -0.01 0.46 16 37 H 0.10 -0.49 7.96 -2.39 -0.02 -0.51 16 38 H 0.40 -4.45 8.74 -74.06 -0.65 -5.09 16 39 H -0.30 -1.57 7.04 99.48 0.70 -0.87 16 40 H -0.29 -0.88 7.11 99.48 0.71 -0.17 16 41 H 0.14 0.03 8.06 -2.91 -0.02 0.01 16 42 H 0.15 -0.20 8.06 -2.91 -0.02 -0.23 16 43 H 0.10 -0.33 8.07 -2.39 -0.02 -0.35 16 44 H 0.11 -0.82 8.14 -2.39 -0.02 -0.84 16 Total: 0.00 -28.59 379.22 -1.98 -30.58 By element: Atomic # 1 Polarization: -15.40 SS G_CDS: -0.36 Total: -15.75 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 4.70 Total: 7.24 kcal Atomic # 7 Polarization: -5.83 SS G_CDS: -6.36 Total: -12.19 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -2.02 Total: -10.18 kcal Atomic # 14 Polarization: -1.74 SS G_CDS: 2.05 Total: 0.31 kcal Total: -28.59 -1.98 -30.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_12360594.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.570 kcal (2) G-P(sol) polarization free energy of solvation -28.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds