Wall clock time and date at job start Sun Mar 7 2021 04:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30277 * 126.28087 * 2 1 4 4 N 1.28668 * 109.38236 * 179.97438 * 3 2 1 5 5 C 1.30277 * 109.37724 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.28093 * 179.97438 * 5 4 3 7 7 H 1.09002 * 112.85047 * 170.36034 * 6 5 4 8 8 C 1.53781 * 113.61772 * 301.55748 * 6 5 4 9 9 C 1.53777 * 87.08336 * 140.06093 * 8 6 5 10 10 H 1.09003 * 113.60961 * 89.20081 * 9 8 6 11 11 N 1.46500 * 113.61534 * 220.01705 * 9 8 6 12 12 C 1.34779 * 119.99895 * 204.99945 * 11 9 8 13 13 O 1.21571 * 120.00005 * 0.02562 * 12 11 9 14 14 C 1.47697 * 119.99765 * 179.97438 * 12 11 9 15 15 C 1.39805 * 120.15474 * 180.02562 * 14 12 11 16 16 F 1.35102 * 120.08105 * 359.96203 * 15 14 12 17 17 C 1.38312 * 119.83259 * 179.97438 * 15 14 12 18 18 C 1.38184 * 120.14390 * 0.02562 * 17 15 14 19 19 C 1.50704 * 119.84066 * 179.97438 * 18 17 15 20 20 O 1.42901 * 109.47059 * 14.99886 * 19 18 17 21 21 Si 1.86304 * 109.47073 * 135.00116 * 19 18 17 22 22 C 1.38653 * 120.31746 * 359.96120 * 18 17 15 23 23 F 1.35103 * 119.91925 * 180.02562 * 22 18 17 24 24 C 1.38074 * 120.16224 * 359.77953 * 22 18 17 25 25 C 1.53775 * 87.07992 * 334.56762 * 9 8 6 26 26 O 1.34359 * 126.28492 * 180.27914 * 2 1 3 27 27 H 1.09005 * 109.46871 * 89.97897 * 1 2 3 28 28 H 1.09000 * 109.47190 * 209.97788 * 1 2 3 29 29 H 1.09006 * 109.47437 * 329.98209 * 1 2 3 30 30 H 1.08997 * 113.61673 * 254.61641 * 8 6 5 31 31 H 1.09009 * 113.61202 * 25.42872 * 8 6 5 32 32 H 0.97002 * 120.00084 * 25.00713 * 11 9 8 33 33 H 1.07994 * 119.92715 * 180.02562 * 17 15 14 34 34 H 1.09006 * 109.47007 * 255.00219 * 19 18 17 35 35 H 0.96709 * 113.99838 * 60.00171 * 20 19 18 36 36 H 1.48499 * 109.99792 * 179.97438 * 21 19 18 37 37 H 1.48495 * 109.99925 * 301.31914 * 21 19 18 38 38 H 1.08010 * 120.07144 * 180.25302 * 24 22 18 39 39 H 1.08993 * 113.61636 * 270.87622 * 25 9 8 40 40 H 1.09008 * 113.61006 * 139.97865 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6762 0.0005 5 6 3.5654 -0.6254 0.0015 6 6 4.8176 -1.4638 0.0018 7 1 4.6185 -2.5220 0.1708 8 6 5.7396 -1.1946 -1.1992 9 6 6.9194 -1.3149 -0.2203 10 1 7.2958 -2.3323 -0.1132 11 7 7.9835 -0.3371 -0.4607 12 6 9.2447 -0.6030 -0.0668 13 8 9.4993 -1.6546 0.4877 14 6 10.3175 0.3826 -0.3096 15 6 11.6270 0.1099 0.0972 16 9 11.9151 -1.0566 0.7149 17 6 12.6266 1.0374 -0.1341 18 6 12.3331 2.2312 -0.7651 19 6 13.4275 3.2372 -1.0132 20 8 14.6995 2.6099 -0.8385 21 14 13.2897 3.8883 -2.7533 22 6 11.0366 2.5078 -1.1714 23 9 10.7587 3.6773 -1.7881 24 6 10.0298 1.5889 -0.9518 25 6 5.9393 -0.8986 0.8891 26 8 2.3021 -1.0830 -0.0053 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3634 0.8899 0.5141 30 1 5.7156 -1.9815 -1.9531 31 1 5.6231 -0.1976 -1.6243 32 1 7.7803 0.5018 -0.9034 33 1 13.6387 0.8281 0.1791 34 1 13.3293 4.0623 -0.3076 35 1 14.8560 1.8651 -1.4351 36 1 14.3630 4.8818 -3.0102 37 1 13.3901 2.7689 -3.7238 38 1 9.0211 1.8041 -1.2725 39 1 5.8785 0.1797 1.0359 40 1 6.0767 -1.4467 1.8213 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14942244_12360598.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:05:05 Heat of formation + Delta-G solvation = -52.065008 kcal Electronic energy + Delta-G solvation = -30053.597304 eV Core-core repulsion = 25281.564398 eV Total energy + Delta-G solvation = -4772.032906 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.107 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.45440 -49.98629 -45.24284 -41.59957 -40.48161 -39.40397 -37.81641 -37.16009 -35.13707 -33.79718 -32.93591 -31.50137 -29.79315 -28.16597 -27.07458 -26.72170 -24.38298 -24.30575 -23.62328 -23.08929 -21.85988 -21.16100 -19.54018 -19.14182 -18.68782 -18.45160 -18.40645 -17.90978 -17.46758 -17.39868 -17.10722 -16.67380 -16.55642 -16.15496 -15.92965 -15.84703 -15.71150 -15.57691 -15.51476 -14.96178 -14.51608 -14.42437 -14.11051 -13.89507 -13.86392 -13.84508 -13.79993 -13.36927 -13.29425 -13.05784 -12.87937 -12.80621 -12.66585 -12.45086 -12.08793 -12.04655 -11.86771 -11.26917 -11.08288 -10.45236 -10.34880 -10.23900 -9.80302 -4.86146 -0.82579 -0.36444 0.09346 1.03124 1.15850 1.34379 1.44468 1.53122 1.82755 1.87305 2.25467 2.66690 2.70057 2.76281 2.98372 3.04082 3.08102 3.19909 3.32131 3.36915 3.48427 3.51095 3.55733 3.71995 3.93661 4.07125 4.18836 4.23877 4.26255 4.30012 4.30902 4.34191 4.45363 4.49068 4.54732 4.58218 4.60742 4.65657 4.66624 4.73072 4.76390 4.93776 5.27501 5.34633 6.13592 6.21980 6.96372 7.29520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.164 3.836 3 N -0.288 5.288 4 N -0.282 5.282 5 C 0.173 3.827 6 C -0.021 4.021 7 H 0.129 0.871 8 C -0.130 4.130 9 C 0.129 3.871 10 H 0.128 0.872 11 N -0.712 5.712 12 C 0.564 3.436 13 O -0.514 6.514 14 C -0.153 4.153 15 C 0.163 3.837 16 F -0.105 7.105 17 C -0.130 4.130 18 C -0.090 4.090 19 C -0.080 4.080 20 O -0.526 6.526 21 Si 0.683 3.317 22 C 0.079 3.921 23 F -0.101 7.101 24 C -0.082 4.082 25 C -0.135 4.135 26 O -0.225 6.225 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.404 0.596 33 H 0.161 0.839 34 H 0.135 0.865 35 H 0.379 0.621 36 H -0.246 1.246 37 H -0.254 1.254 38 H 0.155 0.845 39 H 0.104 0.896 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.606 0.160 -2.728 5.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.047 4.047 3 N -0.135 5.135 4 N -0.128 5.128 5 C -0.038 4.038 6 C -0.042 4.042 7 H 0.147 0.853 8 C -0.169 4.169 9 C 0.024 3.976 10 H 0.146 0.854 11 N -0.364 5.364 12 C 0.350 3.650 13 O -0.389 6.389 14 C -0.157 4.157 15 C 0.142 3.858 16 F -0.083 7.083 17 C -0.149 4.149 18 C -0.091 4.091 19 C -0.189 4.189 20 O -0.332 6.332 21 Si 0.581 3.419 22 C 0.060 3.940 23 F -0.079 7.079 24 C -0.101 4.101 25 C -0.175 4.175 26 O -0.104 6.104 27 H 0.119 0.881 28 H 0.113 0.887 29 H 0.127 0.873 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.240 0.760 33 H 0.179 0.821 34 H 0.153 0.847 35 H 0.227 0.773 36 H -0.171 1.171 37 H -0.178 1.178 38 H 0.172 0.828 39 H 0.123 0.877 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.604 1.154 -2.644 4.616 hybrid contribution 0.010 -1.748 0.065 1.749 sum -3.594 -0.593 -2.579 4.463 Atomic orbital electron populations 1.20411 0.79975 1.05969 1.05485 1.28107 0.97959 0.79493 0.99136 1.74445 0.95931 1.25496 1.17658 1.74309 1.12423 1.08964 1.17113 1.27668 0.84689 0.91609 0.99809 1.20986 0.84081 0.98620 1.00479 0.85344 1.23510 0.92618 1.04583 0.96201 1.22412 0.84983 0.94817 0.95346 0.85424 1.45773 1.07411 1.21786 1.61430 1.17852 0.82255 0.86070 0.78809 1.90891 1.82293 1.24899 1.40825 1.19827 0.93513 0.96627 1.05737 1.17625 0.91890 0.82860 0.93378 1.91653 1.93626 1.44230 1.78813 1.20855 1.00829 0.92419 1.00773 1.20472 0.94279 0.96809 0.97576 1.25097 0.81919 0.96875 1.14972 1.86624 1.33118 1.50784 1.62714 0.94533 0.89997 0.84459 0.72938 1.17087 0.93000 0.83785 1.00144 1.91214 1.92381 1.44688 1.79620 1.21121 0.99909 0.91574 0.97492 1.23637 0.91841 1.03533 0.98457 1.84790 1.17559 1.38463 1.69601 0.88095 0.88716 0.87315 0.88948 0.88101 0.75967 0.82130 0.84721 0.77272 1.17069 1.17800 0.82772 0.87743 0.89287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.20 10.51 36.01 0.38 0.58 16 2 C 0.16 0.20 8.48 -12.94 -0.11 0.09 16 3 N -0.29 -1.12 12.22 32.55 0.40 -0.72 16 4 N -0.28 -0.95 11.88 32.55 0.39 -0.57 16 5 C 0.17 0.20 7.52 -12.94 -0.10 0.10 16 6 C -0.02 0.05 4.29 -90.96 -0.39 -0.34 16 7 H 0.13 -0.50 8.14 -51.93 -0.42 -0.93 16 8 C -0.13 0.43 7.38 -25.92 -0.19 0.24 16 9 C 0.13 -0.29 4.24 -67.12 -0.28 -0.57 16 10 H 0.13 -0.18 7.46 -51.93 -0.39 -0.57 16 11 N -0.71 1.35 5.31 -54.01 -0.29 1.06 16 12 C 0.56 0.70 7.77 -12.40 -0.10 0.60 16 13 O -0.51 -2.65 14.94 5.30 0.08 -2.57 16 14 C -0.15 0.00 5.88 -104.92 -0.62 -0.62 16 15 C 0.16 0.19 7.28 -38.97 -0.28 -0.09 16 16 F -0.11 -0.40 15.55 2.25 0.04 -0.37 16 17 C -0.13 0.08 9.20 -39.57 -0.36 -0.29 16 18 C -0.09 0.12 5.14 -104.49 -0.54 -0.42 16 19 C -0.08 0.12 2.96 36.01 0.11 0.22 16 20 O -0.53 0.28 11.63 -35.23 -0.41 -0.13 16 21 Si 0.68 -0.84 29.56 -169.99 -5.03 -5.87 16 22 C 0.08 -0.15 6.65 -39.49 -0.26 -0.42 16 23 F -0.10 0.26 13.69 2.25 0.03 0.29 16 24 C -0.08 0.20 9.51 -39.11 -0.37 -0.17 16 25 C -0.14 0.26 7.42 -25.92 -0.19 0.07 16 26 O -0.22 -0.35 10.87 5.40 0.06 -0.29 16 27 H 0.10 -0.47 8.14 -51.93 -0.42 -0.90 16 28 H 0.09 -0.46 8.14 -51.93 -0.42 -0.88 16 29 H 0.11 -0.45 8.14 -51.93 -0.42 -0.87 16 30 H 0.09 -0.39 8.14 -51.93 -0.42 -0.81 16 31 H 0.10 -0.30 8.07 -51.92 -0.42 -0.72 16 32 H 0.40 -1.76 6.76 -40.82 -0.28 -2.03 16 33 H 0.16 -0.26 7.06 -52.49 -0.37 -0.63 16 34 H 0.14 -0.31 7.96 -51.93 -0.41 -0.72 16 35 H 0.38 -1.34 8.42 45.56 0.38 -0.96 16 36 H -0.25 -0.41 7.11 56.52 0.40 -0.01 16 37 H -0.25 -0.22 7.11 56.52 0.40 0.18 16 38 H 0.15 -0.84 6.41 -52.48 -0.34 -1.17 16 39 H 0.10 -0.09 7.81 -51.93 -0.41 -0.50 16 40 H 0.09 -0.17 8.14 -51.92 -0.42 -0.59 16 LS Contribution 352.91 15.07 5.32 5.32 Total: 0.00 -10.30 352.91 -6.69 -16.98 By element: Atomic # 1 Polarization: -8.16 SS G_CDS: -3.96 Total: -12.11 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -3.31 Total: -1.01 kcal Atomic # 7 Polarization: -0.73 SS G_CDS: 0.50 Total: -0.23 kcal Atomic # 8 Polarization: -2.72 SS G_CDS: -0.27 Total: -3.00 kcal Atomic # 9 Polarization: -0.15 SS G_CDS: 0.07 Total: -0.08 kcal Atomic # 14 Polarization: -0.84 SS G_CDS: -5.03 Total: -5.87 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -10.30 -6.69 -16.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_12360598.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.083 kcal (2) G-P(sol) polarization free energy of solvation -10.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds