Wall clock time and date at job start Sun Mar 7 2021 04:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30277 * 126.28087 * 2 1 4 4 N 1.28668 * 109.38236 * 179.97438 * 3 2 1 5 5 C 1.30277 * 109.37724 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.28093 * 179.97438 * 5 4 3 7 7 H 1.09002 * 112.85047 * 170.36034 * 6 5 4 8 8 C 1.53781 * 113.61772 * 301.55748 * 6 5 4 9 9 C 1.53777 * 87.08336 * 140.06093 * 8 6 5 10 10 H 1.09003 * 113.60961 * 89.20081 * 9 8 6 11 11 N 1.46500 * 113.61534 * 220.01705 * 9 8 6 12 12 C 1.34779 * 119.99895 * 204.99945 * 11 9 8 13 13 O 1.21571 * 120.00005 * 0.02562 * 12 11 9 14 14 C 1.47697 * 119.99765 * 179.97438 * 12 11 9 15 15 C 1.39805 * 120.15474 * 180.02562 * 14 12 11 16 16 F 1.35102 * 120.08105 * 359.96203 * 15 14 12 17 17 C 1.38312 * 119.83259 * 179.97438 * 15 14 12 18 18 C 1.38184 * 120.14390 * 0.02562 * 17 15 14 19 19 C 1.50704 * 119.84066 * 179.97438 * 18 17 15 20 20 O 1.42901 * 109.47059 * 14.99886 * 19 18 17 21 21 Si 1.86304 * 109.47073 * 135.00116 * 19 18 17 22 22 C 1.38653 * 120.31746 * 359.96120 * 18 17 15 23 23 F 1.35103 * 119.91925 * 180.02562 * 22 18 17 24 24 C 1.38074 * 120.16224 * 359.77953 * 22 18 17 25 25 C 1.53775 * 87.07992 * 334.56762 * 9 8 6 26 26 O 1.34359 * 126.28492 * 180.27914 * 2 1 3 27 27 H 1.09005 * 109.46871 * 89.97897 * 1 2 3 28 28 H 1.09000 * 109.47190 * 209.97788 * 1 2 3 29 29 H 1.09006 * 109.47437 * 329.98209 * 1 2 3 30 30 H 1.08997 * 113.61673 * 254.61641 * 8 6 5 31 31 H 1.09009 * 113.61202 * 25.42872 * 8 6 5 32 32 H 0.97002 * 120.00084 * 25.00713 * 11 9 8 33 33 H 1.07994 * 119.92715 * 180.02562 * 17 15 14 34 34 H 1.09006 * 109.47007 * 255.00219 * 19 18 17 35 35 H 0.96709 * 113.99838 * 60.00171 * 20 19 18 36 36 H 1.48499 * 109.99792 * 179.97438 * 21 19 18 37 37 H 1.48495 * 109.99925 * 301.31914 * 21 19 18 38 38 H 1.08010 * 120.07144 * 180.25302 * 24 22 18 39 39 H 1.08993 * 113.61636 * 270.87622 * 25 9 8 40 40 H 1.09008 * 113.61006 * 139.97865 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6762 0.0005 5 6 3.5654 -0.6254 0.0015 6 6 4.8176 -1.4638 0.0018 7 1 4.6185 -2.5220 0.1708 8 6 5.7396 -1.1946 -1.1992 9 6 6.9194 -1.3149 -0.2203 10 1 7.2958 -2.3323 -0.1132 11 7 7.9835 -0.3371 -0.4607 12 6 9.2447 -0.6030 -0.0668 13 8 9.4993 -1.6546 0.4877 14 6 10.3175 0.3826 -0.3096 15 6 11.6270 0.1099 0.0972 16 9 11.9151 -1.0566 0.7149 17 6 12.6266 1.0374 -0.1341 18 6 12.3331 2.2312 -0.7651 19 6 13.4275 3.2372 -1.0132 20 8 14.6995 2.6099 -0.8385 21 14 13.2897 3.8883 -2.7533 22 6 11.0366 2.5078 -1.1714 23 9 10.7587 3.6773 -1.7881 24 6 10.0298 1.5889 -0.9518 25 6 5.9393 -0.8986 0.8891 26 8 2.3021 -1.0830 -0.0053 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3634 0.8899 0.5141 30 1 5.7156 -1.9815 -1.9531 31 1 5.6231 -0.1976 -1.6243 32 1 7.7803 0.5018 -0.9034 33 1 13.6387 0.8281 0.1791 34 1 13.3293 4.0623 -0.3076 35 1 14.8560 1.8651 -1.4351 36 1 14.3630 4.8818 -3.0102 37 1 13.3901 2.7689 -3.7238 38 1 9.0211 1.8041 -1.2725 39 1 5.8785 0.1797 1.0359 40 1 6.0767 -1.4467 1.8213 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_12360598.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:05:04 Heat of formation + Delta-G solvation = -57.132138 kcal Electronic energy + Delta-G solvation = -30053.817031 eV Core-core repulsion = 25281.564398 eV Total energy + Delta-G solvation = -4772.252634 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.107 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.30025 -50.10753 -45.30674 -41.57262 -40.38003 -39.39288 -37.76666 -37.25197 -35.14781 -33.73656 -32.85065 -31.43017 -29.69045 -28.10952 -26.89061 -26.68607 -24.38361 -24.20448 -23.62710 -23.07063 -21.84716 -21.04283 -19.45569 -19.09779 -18.65936 -18.49957 -18.40107 -17.87446 -17.45452 -17.35141 -17.05694 -16.67043 -16.42862 -16.08916 -15.92734 -15.83320 -15.70272 -15.48524 -15.43898 -14.89214 -14.42679 -14.25552 -14.10641 -13.83351 -13.75243 -13.62942 -13.58914 -13.43308 -13.26140 -12.99789 -12.96077 -12.72256 -12.63956 -12.34261 -12.08206 -11.94309 -11.86502 -11.27649 -11.10541 -10.47325 -10.31375 -10.16372 -9.74757 -4.80121 -0.78169 -0.27371 0.07369 1.09735 1.19717 1.26006 1.45939 1.55882 1.87789 1.91173 2.28176 2.75938 2.78038 2.83925 3.11322 3.15644 3.20580 3.36489 3.44728 3.46795 3.57665 3.65573 3.73124 3.82581 4.02668 4.22395 4.31622 4.36036 4.41416 4.42350 4.50428 4.53934 4.63139 4.63807 4.68135 4.70131 4.74758 4.76195 4.82360 4.89226 5.02271 5.05448 5.38561 5.42967 6.31491 6.34955 6.98581 7.21666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.167 3.833 3 N -0.330 5.330 4 N -0.310 5.310 5 C 0.175 3.825 6 C -0.020 4.020 7 H 0.149 0.851 8 C -0.117 4.117 9 C 0.129 3.871 10 H 0.121 0.879 11 N -0.696 5.696 12 C 0.562 3.438 13 O -0.561 6.561 14 C -0.160 4.160 15 C 0.137 3.863 16 F -0.128 7.128 17 C -0.127 4.127 18 C -0.089 4.089 19 C -0.080 4.080 20 O -0.541 6.541 21 Si 0.746 3.254 22 C 0.085 3.915 23 F -0.092 7.092 24 C -0.067 4.067 25 C -0.134 4.134 26 O -0.232 6.232 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.417 0.583 33 H 0.166 0.834 34 H 0.147 0.853 35 H 0.391 0.609 36 H -0.288 1.288 37 H -0.282 1.282 38 H 0.187 0.813 39 H 0.095 0.905 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.901 0.501 -3.425 6.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.044 4.044 3 N -0.177 5.177 4 N -0.155 5.155 5 C -0.036 4.036 6 C -0.040 4.040 7 H 0.166 0.834 8 C -0.155 4.155 9 C 0.024 3.976 10 H 0.139 0.861 11 N -0.348 5.348 12 C 0.349 3.651 13 O -0.440 6.440 14 C -0.164 4.164 15 C 0.117 3.883 16 F -0.106 7.106 17 C -0.146 4.146 18 C -0.091 4.091 19 C -0.189 4.189 20 O -0.350 6.350 21 Si 0.649 3.351 22 C 0.065 3.935 23 F -0.070 7.070 24 C -0.086 4.086 25 C -0.173 4.173 26 O -0.112 6.112 27 H 0.136 0.864 28 H 0.131 0.869 29 H 0.134 0.866 30 H 0.127 0.873 31 H 0.119 0.881 32 H 0.256 0.744 33 H 0.184 0.816 34 H 0.164 0.836 35 H 0.241 0.759 36 H -0.216 1.216 37 H -0.208 1.208 38 H 0.204 0.796 39 H 0.113 0.887 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.936 1.534 -3.355 6.162 hybrid contribution 0.411 -1.809 0.240 1.871 sum -4.525 -0.275 -3.115 5.500 Atomic orbital electron populations 1.20698 0.77053 1.07181 1.06882 1.28960 0.99334 0.78867 0.97195 1.74374 0.96545 1.26984 1.19782 1.74221 1.12650 1.10140 1.18517 1.28231 0.85373 0.91417 0.98584 1.21224 0.82711 0.99139 1.00925 0.83351 1.23449 0.90983 1.05179 0.95916 1.22411 0.84942 0.94432 0.95840 0.86078 1.45698 1.06531 1.22305 1.60303 1.18063 0.83146 0.85626 0.78234 1.90866 1.83091 1.26826 1.43205 1.19820 0.92776 0.97317 1.06459 1.17943 0.93019 0.82737 0.94631 1.91589 1.93858 1.45626 1.79564 1.20864 1.00757 0.92265 1.00700 1.20507 0.94718 0.96446 0.97390 1.25175 0.81595 0.97075 1.15007 1.86596 1.33551 1.51457 1.63359 0.93902 0.88331 0.81212 0.71685 1.17100 0.92781 0.83992 0.99639 1.91238 1.92247 1.44206 1.79341 1.21359 1.01282 0.90091 0.95899 1.23587 0.92165 1.02933 0.98635 1.84811 1.17805 1.38701 1.69870 0.86412 0.86923 0.86590 0.87324 0.88089 0.74391 0.81611 0.83584 0.75935 1.21558 1.20779 0.79607 0.88692 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.47 10.51 71.24 0.75 1.22 16 2 C 0.17 0.40 8.48 88.34 0.75 1.14 16 3 N -0.33 -2.78 12.22 -165.50 -2.02 -4.81 16 4 N -0.31 -2.29 11.88 -165.50 -1.97 -4.25 16 5 C 0.18 0.42 7.52 88.34 0.66 1.08 16 6 C -0.02 0.10 4.29 -11.01 -0.05 0.05 16 7 H 0.15 -1.32 8.14 -2.39 -0.02 -1.34 16 8 C -0.12 0.87 7.38 31.12 0.23 1.10 16 9 C 0.13 -0.59 4.24 45.51 0.19 -0.39 16 10 H 0.12 -0.30 7.46 -2.39 -0.02 -0.32 16 11 N -0.70 2.81 5.31 -443.05 -2.35 0.46 16 12 C 0.56 1.78 7.77 86.74 0.67 2.45 16 13 O -0.56 -6.79 14.94 -3.94 -0.06 -6.85 16 14 C -0.16 -0.06 5.88 -20.06 -0.12 -0.17 16 15 C 0.14 0.49 7.28 22.67 0.17 0.65 16 16 F -0.13 -1.28 15.55 44.97 0.70 -0.58 16 17 C -0.13 0.09 9.20 22.27 0.20 0.30 16 18 C -0.09 0.28 5.14 -19.78 -0.10 0.18 16 19 C -0.08 0.28 2.96 71.24 0.21 0.49 16 20 O -0.54 0.64 11.63 -148.98 -1.73 -1.10 16 21 Si 0.75 -1.92 29.56 68.60 2.03 0.10 16 22 C 0.08 -0.43 6.65 22.33 0.15 -0.28 16 23 F -0.09 0.64 13.69 44.97 0.62 1.25 16 24 C -0.07 0.41 9.51 22.57 0.21 0.63 16 25 C -0.13 0.48 7.42 31.12 0.23 0.71 16 26 O -0.23 -0.68 10.87 -3.58 -0.04 -0.71 16 27 H 0.12 -1.27 8.14 -2.38 -0.02 -1.29 16 28 H 0.11 -1.26 8.14 -2.39 -0.02 -1.28 16 29 H 0.12 -1.05 8.14 -2.38 -0.02 -1.07 16 30 H 0.11 -1.10 8.14 -2.39 -0.02 -1.12 16 31 H 0.10 -0.70 8.07 -2.38 -0.02 -0.72 16 32 H 0.42 -4.11 6.76 -92.71 -0.63 -4.74 16 33 H 0.17 -0.41 7.06 -2.91 -0.02 -0.43 16 34 H 0.15 -0.83 7.96 -2.38 -0.02 -0.84 16 35 H 0.39 -2.72 8.42 -74.05 -0.62 -3.34 16 36 H -0.29 -1.28 7.11 99.48 0.71 -0.57 16 37 H -0.28 -0.57 7.11 99.48 0.71 0.14 16 38 H 0.19 -2.47 6.41 -2.91 -0.02 -2.49 16 39 H 0.09 -0.12 7.81 -2.39 -0.02 -0.14 16 40 H 0.09 -0.28 8.14 -2.38 -0.02 -0.30 16 Total: 0.00 -26.46 352.91 -0.73 -27.18 By element: Atomic # 1 Polarization: -19.80 SS G_CDS: -0.07 Total: -19.87 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 4.17 Total: 9.15 kcal Atomic # 7 Polarization: -2.26 SS G_CDS: -6.34 Total: -8.60 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -1.83 Total: -8.66 kcal Atomic # 9 Polarization: -0.64 SS G_CDS: 1.31 Total: 0.68 kcal Atomic # 14 Polarization: -1.92 SS G_CDS: 2.03 Total: 0.10 kcal Total: -26.46 -0.73 -27.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_12360598.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.948 kcal (2) G-P(sol) polarization free energy of solvation -26.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds