Wall clock time and date at job start Sun Mar 7 2021 04:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30283 * 126.28390 * 2 1 4 4 N 1.28662 * 109.37832 * 179.73376 * 3 2 1 5 5 C 1.30271 * 109.38353 * 0.44641 * 4 3 2 6 6 C 1.50706 * 126.27984 * 179.82817 * 5 4 3 7 7 H 1.09002 * 112.84742 * 189.35453 * 6 5 4 8 8 C 1.53781 * 113.61527 * 320.54905 * 6 5 4 9 9 C 1.53954 * 87.01606 * 139.95344 * 8 6 5 10 10 H 1.09006 * 113.53787 * 89.19174 * 9 8 6 11 11 N 1.46504 * 113.73957 * 220.05406 * 9 8 6 12 12 C 1.34774 * 119.99752 * 252.59817 * 11 9 8 13 13 O 1.21652 * 120.00409 * 0.02562 * 12 11 9 14 14 C 1.47060 * 120.00010 * 180.02562 * 12 11 9 15 15 C 1.35857 * 125.43125 * 180.02562 * 14 12 11 16 16 C 1.41599 * 107.73336 * 179.97438 * 15 14 12 17 17 C 1.40058 * 133.38509 * 180.02562 * 16 15 14 18 18 C 1.36479 * 119.83047 * 179.97438 * 17 16 15 19 19 C 1.38902 * 120.61473 * 359.97438 * 18 17 16 20 20 C 1.50693 * 119.67486 * 180.02562 * 19 18 17 21 21 O 1.42901 * 109.47129 * 120.00077 * 20 19 18 22 22 Si 1.86303 * 109.47235 * 359.97438 * 20 19 18 23 23 C 1.37715 * 120.64574 * 359.97438 * 19 18 17 24 24 C 1.39190 * 119.81061 * 0.04863 * 23 19 18 25 25 N 1.37481 * 133.18384 * 180.30028 * 24 23 19 26 26 C 1.53778 * 87.11525 * 334.63802 * 9 8 6 27 27 O 1.34359 * 107.43728 * 359.56199 * 5 4 3 28 28 H 1.08998 * 109.46924 * 270.00377 * 1 2 3 29 29 H 1.09003 * 109.46966 * 29.99336 * 1 2 3 30 30 H 1.08998 * 109.47653 * 149.99915 * 1 2 3 31 31 H 1.09005 * 113.61233 * 254.53070 * 8 6 5 32 32 H 1.08999 * 113.61553 * 25.43259 * 8 6 5 33 33 H 0.96990 * 120.00006 * 72.60044 * 11 9 8 34 34 H 1.08000 * 126.13759 * 359.95968 * 15 14 12 35 35 H 1.08004 * 120.09072 * 359.95171 * 17 16 15 36 36 H 1.07998 * 119.68983 * 179.97438 * 18 17 16 37 37 H 1.09004 * 109.47144 * 239.99779 * 20 19 18 38 38 H 0.96701 * 113.99869 * 179.97438 * 21 20 19 39 39 H 1.48496 * 109.99761 * 60.00407 * 22 20 19 40 40 H 1.48505 * 109.99721 * 181.32197 * 22 20 19 41 41 H 1.07999 * 120.09372 * 179.97438 * 23 19 18 42 42 H 0.97000 * 125.60558 * 359.92383 * 25 24 23 43 43 H 1.09000 * 113.61172 * 270.81328 * 26 9 8 44 44 H 1.08995 * 113.61431 * 139.91310 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2780 1.0502 0.0000 4 7 3.5090 0.6761 0.0056 5 6 3.5653 -0.6254 -0.0001 6 6 4.8177 -1.4638 -0.0002 7 1 4.6185 -2.5221 -0.1689 8 6 5.9375 -0.8983 -0.8896 9 6 6.9192 -1.3128 0.2216 10 1 7.2958 -2.3299 0.1126 11 7 7.9832 -0.3351 0.4635 12 6 9.2443 -0.6002 0.0690 13 8 9.4992 -1.6510 -0.4884 14 6 10.3124 0.3810 0.3122 15 6 11.6163 0.2288 -0.0378 16 6 12.3114 1.3925 0.3716 17 6 13.6494 1.7962 0.2799 18 6 14.0286 3.0084 0.7793 19 6 13.0990 3.8487 1.3786 20 6 13.5407 5.1829 1.9224 21 8 12.8290 6.2279 1.2565 22 14 15.3693 5.3956 1.6359 23 6 11.7774 3.4748 1.4799 24 6 11.3664 2.2431 0.9785 25 7 10.1485 1.6074 0.9268 26 6 5.7395 -1.1943 1.2008 27 8 2.3021 -1.0831 -0.0001 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8901 -0.5137 30 1 -0.3634 -0.8899 -0.5138 31 1 6.0743 -1.4472 -1.8214 32 1 5.8753 0.1798 -1.0375 33 1 7.7799 0.5029 0.9075 34 1 12.0457 -0.6264 -0.5383 35 1 14.3794 1.1497 -0.1845 36 1 15.0610 3.3172 0.7077 37 1 13.3333 5.2262 2.9916 38 1 13.0631 7.1167 1.5571 39 1 15.6656 5.3383 0.1820 40 1 15.8234 6.6938 2.1962 41 1 11.0622 4.1349 1.9480 42 1 9.3121 1.9606 1.2682 43 1 5.6230 -0.1972 1.6255 44 1 5.7166 -1.9817 1.9542 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_13158378.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:05:41 Heat of formation + Delta-G solvation = 60.266866 kcal Electronic energy + Delta-G solvation = -29486.267205 eV Core-core repulsion = 25180.597514 eV Total energy + Delta-G solvation = -4305.669691 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 355.136 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.35303 -42.71466 -41.16395 -39.61845 -38.80448 -37.29896 -37.09315 -35.12101 -33.66470 -33.29883 -31.25045 -30.43130 -29.69300 -27.50487 -26.94585 -26.40439 -24.62178 -23.74784 -23.45690 -22.82721 -21.92167 -21.41050 -20.86034 -19.46186 -18.67754 -18.55576 -18.51775 -17.97656 -17.44935 -17.05722 -16.61772 -16.47401 -16.29163 -15.92196 -15.57466 -15.39901 -15.12174 -15.02957 -14.76368 -14.59989 -14.29915 -14.26062 -13.89367 -13.77753 -13.68837 -13.62844 -13.50716 -13.46884 -13.01534 -12.79257 -12.69136 -12.39695 -12.32150 -12.16664 -11.99686 -11.92379 -11.69959 -11.40018 -10.97625 -10.52427 -10.46495 -10.30621 -9.33449 -8.82594 -4.87686 -0.37872 0.02912 0.51910 0.92456 1.15285 1.21357 1.33204 1.64196 1.75231 1.95139 2.00814 2.14705 2.72939 2.73650 3.15330 3.31481 3.39412 3.43758 3.56903 3.60738 3.65581 3.68646 3.86154 3.98228 4.04665 4.21957 4.27247 4.30186 4.37239 4.43055 4.44362 4.48281 4.50792 4.57350 4.61739 4.63899 4.66539 4.77366 4.84296 4.88974 4.96624 4.98764 5.00709 5.25778 5.38628 5.40099 5.54058 5.58256 5.97341 6.21404 6.40247 6.60587 6.90037 7.17033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.168 3.832 3 N -0.332 5.332 4 N -0.313 5.313 5 C 0.175 3.825 6 C -0.018 4.018 7 H 0.152 0.848 8 C -0.135 4.135 9 C 0.130 3.870 10 H 0.128 0.872 11 N -0.704 5.704 12 C 0.591 3.409 13 O -0.553 6.553 14 C 0.008 3.992 15 C -0.114 4.114 16 C -0.136 4.136 17 C -0.057 4.057 18 C -0.149 4.149 19 C -0.052 4.052 20 C -0.085 4.085 21 O -0.559 6.559 22 Si 0.766 3.234 23 C -0.112 4.112 24 C 0.106 3.894 25 N -0.566 5.566 26 C -0.118 4.118 27 O -0.230 6.230 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.411 0.589 34 H 0.159 0.841 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.099 0.901 38 H 0.395 0.605 39 H -0.300 1.300 40 H -0.287 1.287 41 H 0.134 0.866 42 H 0.430 0.570 43 H 0.095 0.905 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.435 -1.887 5.006 5.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.043 4.043 3 N -0.179 5.179 4 N -0.159 5.159 5 C -0.036 4.036 6 C -0.038 4.038 7 H 0.170 0.830 8 C -0.174 4.174 9 C 0.025 3.975 10 H 0.146 0.854 11 N -0.354 5.354 12 C 0.378 3.622 13 O -0.431 6.431 14 C -0.102 4.102 15 C -0.141 4.141 16 C -0.140 4.140 17 C -0.075 4.075 18 C -0.168 4.168 19 C -0.054 4.054 20 C -0.193 4.193 21 O -0.369 6.369 22 Si 0.672 3.328 23 C -0.133 4.133 24 C -0.004 4.004 25 N -0.172 5.172 26 C -0.157 4.157 27 O -0.110 6.110 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.132 0.868 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.247 0.753 34 H 0.177 0.823 35 H 0.169 0.831 36 H 0.163 0.837 37 H 0.117 0.883 38 H 0.245 0.755 39 H -0.228 1.228 40 H -0.215 1.215 41 H 0.151 0.849 42 H 0.271 0.729 43 H 0.114 0.886 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.751 -1.417 3.986 4.578 hybrid contribution -1.680 0.739 0.044 1.836 sum -3.431 -0.678 4.030 5.336 Atomic orbital electron populations 1.20707 0.76943 1.07235 1.06922 1.28989 0.99366 0.78848 0.97066 1.74373 0.96537 1.27078 1.19894 1.74215 1.12732 1.10293 1.18628 1.28255 0.85455 0.91387 0.98521 1.21242 0.82597 0.99280 1.00714 0.82983 1.23618 0.92307 1.02678 0.98823 1.22489 0.84816 0.94522 0.95670 0.85428 1.45722 1.06981 1.22209 1.60469 1.17239 0.81994 0.84973 0.77991 1.90857 1.82795 1.25977 1.43477 1.20023 0.95643 0.88075 1.06426 1.21111 0.91404 0.98905 1.02689 1.18454 0.94787 0.95656 1.05140 1.20624 0.93708 0.96054 0.97137 1.20651 0.99676 0.95136 1.01306 1.19227 0.93175 0.94563 0.98462 1.25016 1.08865 0.86093 0.99346 1.86551 1.65612 1.18502 1.66214 0.94041 0.74465 0.84450 0.79831 1.19985 0.96361 0.93440 1.03516 1.18436 0.85441 0.95143 1.01429 1.41803 1.09310 1.14490 1.51566 1.23442 0.91209 1.04943 0.96063 1.84813 1.17734 1.38632 1.69858 0.86363 0.86611 0.86796 0.89045 0.89241 0.75290 0.82296 0.83110 0.83734 0.88336 0.75456 1.22801 1.21459 0.84852 0.72947 0.88627 0.87107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.44 10.51 71.24 0.75 1.19 16 2 C 0.17 0.51 8.48 88.34 0.75 1.26 16 3 N -0.33 -3.15 12.22 -165.49 -2.02 -5.17 16 4 N -0.31 -2.69 11.88 -165.50 -1.97 -4.66 16 5 C 0.18 0.56 7.52 88.34 0.66 1.22 16 6 C -0.02 0.08 4.28 -11.01 -0.05 0.03 16 7 H 0.15 -1.35 8.14 -2.39 -0.02 -1.37 16 8 C -0.13 0.38 7.44 31.18 0.23 0.62 16 9 C 0.13 -0.52 4.24 45.57 0.19 -0.33 16 10 H 0.13 -0.38 7.46 -2.38 -0.02 -0.40 16 11 N -0.70 1.82 5.36 -443.35 -2.38 -0.55 16 12 C 0.59 2.39 7.80 86.56 0.68 3.07 16 13 O -0.55 -6.11 16.44 -4.20 -0.07 -6.18 16 14 C 0.01 0.03 6.97 39.91 0.28 0.31 16 15 C -0.11 -0.63 10.53 22.55 0.24 -0.39 16 16 C -0.14 -0.71 6.16 -21.36 -0.13 -0.84 16 17 C -0.06 -0.13 10.06 22.30 0.22 0.10 16 18 C -0.15 -0.22 8.59 22.02 0.19 -0.03 16 19 C -0.05 -0.13 5.43 -19.83 -0.11 -0.24 16 20 C -0.08 0.08 2.80 71.23 0.20 0.28 16 21 O -0.56 -1.09 12.73 -148.98 -1.90 -2.98 16 22 Si 0.77 -1.60 29.75 68.60 2.04 0.44 16 23 C -0.11 -0.35 9.61 22.37 0.22 -0.13 16 24 C 0.11 0.42 7.25 39.13 0.28 0.70 16 25 N -0.57 -0.07 6.07 -177.19 -1.08 -1.15 16 26 C -0.12 0.78 7.38 31.12 0.23 1.01 16 27 O -0.23 -0.79 10.87 -3.63 -0.04 -0.83 16 28 H 0.12 -1.23 8.14 -2.39 -0.02 -1.25 16 29 H 0.12 -0.98 8.14 -2.39 -0.02 -1.00 16 30 H 0.11 -1.24 8.14 -2.39 -0.02 -1.26 16 31 H 0.09 -0.28 8.14 -2.38 -0.02 -0.30 16 32 H 0.09 0.03 7.81 -2.39 -0.02 0.01 16 33 H 0.41 -2.91 7.78 -92.72 -0.72 -3.63 16 34 H 0.16 0.69 8.06 -2.91 -0.02 0.67 16 35 H 0.15 -0.36 8.06 -2.91 -0.02 -0.39 16 36 H 0.15 -0.39 4.82 -2.91 -0.01 -0.41 16 37 H 0.10 -0.51 7.96 -2.38 -0.02 -0.53 16 38 H 0.39 -2.39 8.74 -74.06 -0.65 -3.04 16 39 H -0.30 -1.68 7.11 99.48 0.71 -0.97 16 40 H -0.29 -0.56 7.11 99.48 0.71 0.15 16 41 H 0.13 0.09 8.06 -2.91 -0.02 0.06 16 42 H 0.43 -2.62 8.12 -92.71 -0.75 -3.38 16 43 H 0.10 -0.51 8.07 -2.39 -0.02 -0.53 16 44 H 0.11 -1.07 8.14 -2.39 -0.02 -1.08 16 Total: 0.00 -28.36 378.39 -3.56 -31.91 By element: Atomic # 1 Polarization: -17.67 SS G_CDS: -0.98 Total: -18.65 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 4.83 Total: 7.82 kcal Atomic # 7 Polarization: -4.09 SS G_CDS: -7.44 Total: -11.53 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -2.01 Total: -10.00 kcal Atomic # 14 Polarization: -1.60 SS G_CDS: 2.04 Total: 0.44 kcal Total: -28.36 -3.56 -31.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_13158378.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.178 kcal (2) G-P(sol) polarization free energy of solvation -28.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds