Wall clock time and date at job start Sun Mar 7 2021 04:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30274 * 126.27845 * 2 1 4 4 N 1.28673 * 109.37898 * 179.72794 * 3 2 1 5 5 C 1.30271 * 109.37814 * 0.44936 * 4 3 2 6 6 C 1.50704 * 126.28141 * 179.82724 * 5 4 3 7 7 H 1.09003 * 112.85119 * 168.48933 * 6 5 4 8 8 C 1.53783 * 113.61322 * 299.68683 * 6 5 4 9 9 C 1.53772 * 87.08018 * 140.06219 * 8 6 5 10 10 H 1.09001 * 113.61330 * 89.20179 * 9 8 6 11 11 N 1.46504 * 113.61635 * 220.01469 * 9 8 6 12 12 C 1.34777 * 120.00243 * 205.00408 * 11 9 8 13 13 O 1.21278 * 119.99845 * 0.02562 * 12 11 9 14 14 C 1.50694 * 119.99648 * 180.02562 * 12 11 9 15 15 C 1.50704 * 109.46821 * 185.62293 * 14 12 11 16 16 C 1.39325 * 120.06089 * 84.51852 * 15 14 12 17 17 C 1.48394 * 120.11657 * 0.02562 * 16 15 14 18 18 C 1.39342 * 120.11799 * 236.37195 * 17 16 15 19 19 C 1.38019 * 119.87497 * 179.74651 * 18 17 16 20 20 C 1.38318 * 120.12054 * 0.50941 * 19 18 17 21 21 C 1.50706 * 119.87819 * 179.74446 * 20 19 18 22 22 O 1.42903 * 109.47170 * 120.01799 * 21 20 19 23 23 Si 1.86296 * 109.47002 * 0.02562 * 21 20 19 24 24 C 1.38322 * 120.24449 * 359.76103 * 20 19 18 25 25 C 1.38020 * 120.12273 * 359.97438 * 24 20 19 26 26 C 1.39348 * 119.75849 * 180.27830 * 16 15 14 27 27 C 1.38001 * 119.87919 * 359.72075 * 26 16 15 28 28 C 1.38342 * 120.11934 * 0.02654 * 27 26 16 29 29 C 1.38039 * 120.06390 * 264.26866 * 15 14 12 30 30 C 1.53774 * 87.08401 * 334.56698 * 9 8 6 31 31 O 1.34354 * 126.28308 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47574 * 269.99287 * 1 2 3 33 33 H 1.08997 * 109.47643 * 30.00107 * 1 2 3 34 34 H 1.09005 * 109.46815 * 149.99739 * 1 2 3 35 35 H 1.09005 * 113.60889 * 25.51126 * 8 6 5 36 36 H 1.09001 * 113.68647 * 254.62638 * 8 6 5 37 37 H 0.97002 * 119.99478 * 25.00887 * 11 9 8 38 38 H 1.09001 * 109.47623 * 65.62750 * 14 12 11 39 39 H 1.08999 * 109.47280 * 305.62085 * 14 12 11 40 40 H 1.07997 * 120.05861 * 359.97438 * 18 17 16 41 41 H 1.08003 * 119.93765 * 180.22589 * 19 18 17 42 42 H 1.08995 * 109.47068 * 240.01658 * 21 20 19 43 43 H 0.96696 * 113.99834 * 300.00136 * 22 21 20 44 44 H 1.48498 * 110.00108 * 179.97438 * 23 21 20 45 45 H 1.48504 * 110.00181 * 301.31799 * 23 21 20 46 46 H 1.08001 * 119.93860 * 180.02562 * 24 20 19 47 47 H 1.07994 * 120.06133 * 179.97438 * 25 24 20 48 48 H 1.08008 * 120.06460 * 179.70844 * 26 16 15 49 49 H 1.08001 * 119.94112 * 180.02562 * 27 26 16 50 50 H 1.08004 * 119.87553 * 179.97438 * 28 27 26 51 51 H 1.07999 * 119.94002 * 359.97438 * 29 15 14 52 52 H 1.09001 * 113.61630 * 139.98081 * 30 9 8 53 53 H 1.08997 * 113.61961 * 270.87972 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6762 0.0058 5 6 3.5654 -0.6253 0.0000 6 6 4.8177 -1.4637 0.0000 7 1 4.6213 -2.5180 0.1951 8 6 5.7216 -1.2209 -1.2202 9 6 6.9158 -1.3200 -0.2566 10 1 7.2940 -2.3348 -0.1328 11 7 7.9761 -0.3478 -0.5340 12 6 9.2430 -0.6053 -0.1532 13 8 9.5055 -1.6420 0.4187 14 6 10.3334 0.3951 -0.4382 15 6 11.6654 -0.1867 -0.0400 16 6 12.3602 -1.0091 -0.9244 17 6 11.7914 -1.3142 -2.2606 18 6 11.5913 -2.6370 -2.6499 19 6 11.0571 -2.9149 -3.8918 20 6 10.7303 -1.8833 -4.7535 21 6 10.1527 -2.1931 -6.1105 22 8 8.8591 -1.5967 -6.2251 23 14 10.0057 -4.0389 -6.3162 24 6 10.9321 -0.5685 -4.3743 25 6 11.4606 -0.2790 -3.1326 26 6 13.5886 -1.5484 -0.5475 27 6 14.1130 -1.2610 0.6962 28 6 13.4214 -0.4395 1.5684 29 6 12.2018 0.0983 1.1995 30 6 5.9523 -0.8795 0.8580 31 8 2.3021 -1.0830 0.0005 32 1 -0.3634 -0.0001 1.0276 33 1 -0.3634 0.8899 -0.5138 34 1 -0.3633 -0.8900 -0.5139 35 1 5.5995 -0.2329 -1.6642 36 1 5.6873 -2.0233 -1.9571 37 1 7.7662 0.4813 -0.9918 38 1 10.1496 1.3055 0.1323 39 1 10.3428 0.6290 -1.5027 40 1 11.8503 -3.4433 -1.9797 41 1 10.8982 -3.9398 -4.1932 42 1 10.8074 -1.7922 -6.8842 43 1 8.2230 -1.9075 -5.5665 44 1 9.4367 -4.3576 -7.6503 45 1 11.3396 -4.6744 -6.1675 46 1 10.6748 0.2331 -5.0508 47 1 11.6181 0.7479 -2.8377 48 1 14.1291 -2.1904 -1.2273 49 1 15.0652 -1.6781 0.9892 50 1 13.8353 -0.2175 2.5409 51 1 11.6662 0.7393 1.8842 52 1 6.1036 -1.4070 1.7998 53 1 5.8935 0.2018 0.9822 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_13158394.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:05:46 Heat of formation + Delta-G solvation = 51.645988 kcal Electronic energy + Delta-G solvation = -37884.132112 eV Core-core repulsion = 33075.986984 eV Total energy + Delta-G solvation = -4808.145128 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.173 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -45.29459 -41.55980 -40.81485 -39.84036 -39.10139 -37.53178 -37.24070 -34.83134 -34.27766 -33.59654 -33.27075 -31.96852 -30.71302 -29.78714 -28.71791 -26.83844 -26.73531 -26.42467 -24.13002 -23.84814 -23.52253 -23.31029 -22.56463 -21.73314 -21.32442 -20.70384 -18.59876 -18.51340 -18.47366 -18.03111 -17.85048 -17.34954 -16.98756 -16.70708 -16.36784 -16.31368 -16.18547 -15.79071 -15.59497 -15.50143 -15.39688 -15.36960 -14.76285 -14.56201 -14.44200 -14.23829 -14.14553 -14.03044 -13.73237 -13.65270 -13.59817 -13.57560 -13.41404 -13.29420 -13.20916 -12.96000 -12.92148 -12.63513 -12.38461 -12.28677 -12.17864 -12.04871 -11.86057 -11.83651 -11.81564 -11.66133 -10.90818 -10.47644 -10.45780 -10.12403 -10.01265 -9.92877 -9.72481 -9.20335 -5.02838 -0.08499 0.08826 0.39704 0.42425 0.62448 1.22028 1.27498 1.30089 1.60439 1.68265 1.93365 2.24451 2.64029 2.80323 2.91457 3.25391 3.41873 3.48117 3.53743 3.58704 3.68821 3.72187 3.76930 3.77224 3.92295 3.96991 4.00336 4.04395 4.09602 4.19105 4.32832 4.33277 4.38992 4.47372 4.48578 4.53945 4.54066 4.56151 4.57421 4.62875 4.68334 4.70358 4.71182 4.72921 4.87143 4.87791 4.93567 4.99549 5.03255 5.04146 5.10555 5.20348 5.35708 5.42677 5.49501 5.54617 5.57590 5.59749 5.67290 5.94774 6.06482 6.58567 6.76409 7.22950 7.30401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.167 3.833 3 N -0.332 5.332 4 N -0.313 5.313 5 C 0.177 3.823 6 C -0.021 4.021 7 H 0.148 0.852 8 C -0.115 4.115 9 C 0.133 3.867 10 H 0.117 0.883 11 N -0.709 5.709 12 C 0.522 3.478 13 O -0.569 6.569 14 C -0.113 4.113 15 C -0.061 4.061 16 C -0.051 4.051 17 C -0.043 4.043 18 C -0.107 4.107 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.067 4.067 22 O -0.551 6.551 23 Si 0.764 3.236 24 C -0.092 4.092 25 C -0.113 4.113 26 C -0.119 4.119 27 C -0.127 4.127 28 C -0.125 4.125 29 C -0.118 4.118 30 C -0.135 4.135 31 O -0.232 6.232 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.415 0.585 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.139 0.861 42 H 0.108 0.892 43 H 0.394 0.606 44 H -0.298 1.298 45 H -0.290 1.290 46 H 0.135 0.865 47 H 0.141 0.859 48 H 0.128 0.872 49 H 0.138 0.862 50 H 0.139 0.861 51 H 0.135 0.865 52 H 0.083 0.917 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.940 -1.078 0.334 4.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.044 4.044 3 N -0.178 5.178 4 N -0.158 5.158 5 C -0.035 4.035 6 C -0.041 4.041 7 H 0.166 0.834 8 C -0.154 4.154 9 C 0.028 3.972 10 H 0.134 0.866 11 N -0.361 5.361 12 C 0.310 3.690 13 O -0.447 6.447 14 C -0.152 4.152 15 C -0.062 4.062 16 C -0.051 4.051 17 C -0.043 4.043 18 C -0.125 4.125 19 C -0.133 4.133 20 C -0.120 4.120 21 C -0.178 4.178 22 O -0.359 6.359 23 Si 0.671 3.329 24 C -0.110 4.110 25 C -0.131 4.131 26 C -0.137 4.137 27 C -0.145 4.145 28 C -0.143 4.143 29 C -0.136 4.136 30 C -0.174 4.174 31 O -0.112 6.112 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.114 0.886 36 H 0.129 0.871 37 H 0.251 0.749 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.156 0.844 42 H 0.126 0.874 43 H 0.244 0.756 44 H -0.226 1.226 45 H -0.217 1.217 46 H 0.153 0.847 47 H 0.158 0.842 48 H 0.146 0.854 49 H 0.156 0.844 50 H 0.156 0.844 51 H 0.153 0.847 52 H 0.102 0.898 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.869 -0.946 -0.205 3.028 hybrid contribution 0.046 -0.289 -0.053 0.297 sum -2.823 -1.235 -0.258 3.093 Atomic orbital electron populations 1.20693 0.77040 1.07261 1.06790 1.28954 0.99330 0.78887 0.97228 1.74373 0.96569 1.27061 1.19817 1.74227 1.12639 1.10271 1.18648 1.28286 0.85393 0.91400 0.98384 1.21262 0.82634 0.98970 1.01213 0.83442 1.23420 0.91300 1.04973 0.95733 1.22248 0.85339 0.94559 0.95073 0.86550 1.45840 1.06793 1.23051 1.60394 1.20728 0.83762 0.87179 0.77359 1.90719 1.83044 1.28284 1.42647 1.20952 0.89522 0.98657 1.06092 1.19443 0.95018 0.97504 0.94203 1.18727 0.94952 0.98097 0.93300 1.18864 0.98895 0.93662 0.92870 1.21248 0.99022 0.95956 0.96298 1.21061 0.99574 0.98882 0.93811 1.20414 1.00998 0.94103 0.96533 1.25043 0.86541 1.10687 0.95483 1.86471 1.20451 1.69689 1.59290 0.93806 0.82639 0.74026 0.82396 1.21049 0.97613 0.96303 0.96073 1.21365 0.99059 0.99158 0.93536 1.21356 0.95300 0.99916 0.97140 1.21355 1.00806 0.98506 0.93798 1.21467 0.95194 0.97251 1.00366 1.21211 0.96227 1.00473 0.95666 1.23574 0.92543 1.02467 0.98844 1.84811 1.17800 1.38662 1.69904 0.86613 0.86553 0.86774 0.88646 0.87136 0.74853 0.85585 0.85940 0.85789 0.84415 0.87423 0.75601 1.22579 1.21742 0.84687 0.84180 0.85400 0.84375 0.84355 0.84671 0.89838 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.44 10.51 71.24 0.75 1.19 16 2 C 0.17 0.49 8.48 88.34 0.75 1.24 16 3 N -0.33 -3.08 12.22 -165.51 -2.02 -5.10 16 4 N -0.31 -2.63 11.83 -165.50 -1.96 -4.59 16 5 C 0.18 0.55 7.54 88.34 0.67 1.21 16 6 C -0.02 0.09 4.29 -11.01 -0.05 0.04 16 7 H 0.15 -1.24 8.14 -2.39 -0.02 -1.26 16 8 C -0.12 0.81 7.38 31.12 0.23 1.04 16 9 C 0.13 -0.57 4.24 45.51 0.19 -0.37 16 10 H 0.12 -0.24 7.46 -2.39 -0.02 -0.26 16 11 N -0.71 2.78 5.35 -440.06 -2.36 0.42 16 12 C 0.52 0.82 7.81 87.66 0.68 1.50 16 13 O -0.57 -5.77 15.65 -3.02 -0.05 -5.82 16 14 C -0.11 0.24 5.33 29.10 0.16 0.39 16 15 C -0.06 -0.18 4.38 -19.65 -0.09 -0.27 16 16 C -0.05 -0.21 5.40 -20.04 -0.11 -0.32 16 17 C -0.04 -0.11 4.91 -20.04 -0.10 -0.21 16 18 C -0.11 -0.27 9.62 22.48 0.22 -0.06 16 19 C -0.12 0.00 8.65 22.24 0.19 0.19 16 20 C -0.12 0.06 5.40 -19.82 -0.11 -0.05 16 21 C -0.07 0.08 2.82 71.24 0.20 0.28 16 22 O -0.55 0.77 12.76 -148.98 -1.90 -1.13 16 23 Si 0.76 -1.34 29.78 68.60 2.04 0.71 16 24 C -0.09 0.06 9.59 22.24 0.21 0.27 16 25 C -0.11 0.04 7.74 22.48 0.17 0.22 16 26 C -0.12 -0.49 9.62 22.48 0.22 -0.27 16 27 C -0.13 -0.36 10.03 22.24 0.22 -0.14 16 28 C -0.12 -0.31 10.04 22.31 0.22 -0.09 16 29 C -0.12 -0.33 9.67 22.24 0.21 -0.11 16 30 C -0.13 0.38 7.42 31.12 0.23 0.61 16 31 O -0.23 -0.79 10.87 -3.60 -0.04 -0.83 16 32 H 0.12 -1.16 8.14 -2.39 -0.02 -1.18 16 33 H 0.12 -1.02 8.14 -2.39 -0.02 -1.04 16 34 H 0.11 -1.27 8.14 -2.38 -0.02 -1.29 16 35 H 0.10 -0.54 8.07 -2.38 -0.02 -0.56 16 36 H 0.11 -1.16 8.14 -2.39 -0.02 -1.18 16 37 H 0.41 -3.43 8.73 -92.71 -0.81 -4.24 16 38 H 0.13 -0.83 8.05 -2.39 -0.02 -0.85 16 39 H 0.12 -0.63 4.71 -2.39 -0.01 -0.64 16 40 H 0.12 0.32 8.06 -2.91 -0.02 0.29 16 41 H 0.14 -0.43 4.86 -2.91 -0.01 -0.45 16 42 H 0.11 0.00 7.96 -2.39 -0.02 -0.02 16 43 H 0.39 -3.65 8.70 -74.06 -0.64 -4.29 16 44 H -0.30 -1.65 7.11 99.48 0.71 -0.94 16 45 H -0.29 -1.05 7.11 99.48 0.71 -0.34 16 46 H 0.14 -0.30 8.06 -2.91 -0.02 -0.32 16 47 H 0.14 -0.50 7.17 -2.91 -0.02 -0.52 16 48 H 0.13 0.25 8.06 -2.91 -0.02 0.23 16 49 H 0.14 -0.15 8.06 -2.91 -0.02 -0.17 16 50 H 0.14 -0.20 8.06 -2.91 -0.02 -0.22 16 51 H 0.14 -0.10 8.06 -2.91 -0.02 -0.13 16 52 H 0.08 -0.20 8.14 -2.39 -0.02 -0.21 16 53 H 0.09 0.00 7.78 -2.39 -0.02 -0.01 16 Total: 0.00 -28.00 444.25 -1.63 -29.64 By element: Atomic # 1 Polarization: -19.16 SS G_CDS: -0.44 Total: -19.60 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 5.09 Total: 6.30 kcal Atomic # 7 Polarization: -2.93 SS G_CDS: -6.34 Total: -9.27 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -1.99 Total: -7.78 kcal Atomic # 14 Polarization: -1.34 SS G_CDS: 2.04 Total: 0.71 kcal Total: -28.00 -1.63 -29.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_13158394.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.285 kcal (2) G-P(sol) polarization free energy of solvation -28.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds