Wall clock time and date at job start Sun Mar 7 2021 04:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30279 * 126.27910 * 2 1 4 4 N 1.28673 * 109.37667 * 179.73182 * 3 2 1 5 5 C 1.30276 * 109.37959 * 0.44313 * 4 3 2 6 6 C 1.50704 * 126.27921 * 179.82405 * 5 4 3 7 7 H 1.09001 * 112.84546 * 190.88598 * 6 5 4 8 8 C 1.53783 * 113.61369 * 322.19259 * 6 5 4 9 9 C 1.53781 * 87.08065 * 139.97993 * 8 6 5 10 10 H 1.08995 * 113.68958 * 89.12161 * 9 8 6 11 11 N 1.46492 * 113.61750 * 220.02100 * 9 8 6 12 12 C 1.34779 * 119.99970 * 252.49579 * 11 9 8 13 13 O 1.21588 * 120.00063 * 359.97438 * 12 11 9 14 14 C 1.47562 * 120.00226 * 179.97438 * 12 11 9 15 15 C 1.40212 * 120.12214 * 180.02562 * 14 12 11 16 16 O 1.35644 * 120.00234 * 359.97438 * 15 14 12 17 17 C 1.38824 * 119.99419 * 180.02562 * 15 14 12 18 18 C 1.37768 * 120.24182 * 0.02562 * 17 15 14 19 19 C 1.39839 * 120.25109 * 359.97438 * 18 17 15 20 20 C 1.47812 * 120.00367 * 180.02562 * 19 18 17 21 21 C 1.35942 * 125.93073 * 0.25798 * 20 19 18 22 22 C 1.40962 * 106.74342 * 180.12902 * 21 20 19 23 23 C 1.34715 * 107.02840 * 359.62761 * 22 21 20 24 24 C 1.50697 * 125.66268 * 180.19318 * 23 22 21 25 25 O 1.42901 * 109.47456 * 65.00233 * 24 23 22 26 26 Si 1.86297 * 109.46881 * 185.00345 * 24 23 22 27 27 O 1.34335 * 108.66996 * 0.22952 * 23 22 21 28 28 C 1.39176 * 119.99636 * 0.27288 * 19 18 17 29 29 C 1.53778 * 113.61060 * 59.68995 * 6 5 4 30 30 O 1.34357 * 126.28289 * 180.02562 * 2 1 3 31 31 H 1.09007 * 109.47198 * 270.00031 * 1 2 3 32 32 H 1.08998 * 109.47498 * 29.99654 * 1 2 3 33 33 H 1.08997 * 109.47462 * 150.00317 * 1 2 3 34 34 H 1.09005 * 113.61663 * 25.43458 * 8 6 5 35 35 H 1.08990 * 113.61334 * 254.52942 * 8 6 5 36 36 H 0.97001 * 120.00261 * 72.49937 * 11 9 8 37 37 H 0.96697 * 114.00557 * 270.02288 * 16 15 14 38 38 H 1.07996 * 119.87616 * 179.97438 * 17 15 14 39 39 H 1.08001 * 119.87092 * 179.97438 * 18 17 15 40 40 H 1.08002 * 126.62671 * 359.97438 * 21 20 19 41 41 H 1.08002 * 126.48821 * 179.89910 * 22 21 20 42 42 H 1.09000 * 109.47385 * 305.00131 * 24 23 22 43 43 H 0.96692 * 114.00407 * 179.97438 * 25 24 23 44 44 H 1.48506 * 110.00142 * 178.68293 * 26 24 23 45 45 H 1.48502 * 110.00085 * 299.99874 * 26 24 23 46 46 H 1.08000 * 120.12224 * 179.72804 * 28 19 18 47 47 H 1.09005 * 113.61188 * 105.47068 * 29 6 5 48 48 H 1.08991 * 113.69620 * 334.57688 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 0.0057 5 6 3.5654 -0.6254 0.0000 6 6 4.8177 -1.4638 -0.0001 7 1 4.6212 -2.5180 -0.1951 8 6 5.9514 -0.8775 -0.8579 9 6 6.9158 -1.3179 0.2561 10 1 7.2949 -2.3321 0.1314 11 7 7.9748 -0.3447 0.5342 12 6 9.2420 -0.6004 0.1529 13 8 9.5063 -1.6389 -0.4215 14 6 10.3088 0.3801 0.4325 15 6 11.6278 0.1169 0.0365 16 8 11.9253 -1.0409 -0.6045 17 6 12.6294 1.0410 0.3014 18 6 12.3330 2.2178 0.9535 19 6 11.0209 2.4907 1.3530 20 6 10.7089 3.7553 2.0518 21 6 11.5981 4.7357 2.3619 22 6 10.8725 5.7479 3.0221 23 6 9.5887 5.3431 3.0742 24 6 8.4490 6.1131 3.6899 25 8 8.2332 7.3170 2.9509 26 14 6.9035 5.0737 3.6486 27 8 9.4934 4.1387 2.4870 28 6 10.0098 1.5692 1.0972 29 6 5.7215 -1.2209 1.2201 30 8 2.3021 -1.0831 -0.0005 31 1 -0.3634 0.0000 1.0277 32 1 -0.3634 0.8900 -0.5138 33 1 -0.3634 -0.8900 -0.5138 34 1 5.8913 0.2039 -0.9810 35 1 6.1030 -1.4040 -1.8000 36 1 7.7642 0.4836 0.9928 37 1 12.1668 -1.7670 -0.0133 38 1 13.6448 0.8361 -0.0042 39 1 13.1169 2.9323 1.1568 40 1 12.6564 4.7375 2.1464 41 1 11.2698 6.6748 3.4088 42 1 8.6933 6.3599 4.7231 43 1 7.5122 7.8638 3.2915 44 1 5.7794 5.8095 4.2815 45 1 6.5595 4.7305 2.2453 46 1 8.9966 1.7759 1.4088 47 1 5.6875 -2.0249 1.9555 48 1 5.5994 -0.2340 1.6662 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_13259648.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:05:51 Heat of formation + Delta-G solvation = 8.280696 kcal Electronic energy + Delta-G solvation = -36282.149221 eV Core-core repulsion = 31274.060627 eV Total energy + Delta-G solvation = -5008.088594 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 398.140 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.36004 -43.69803 -41.70822 -40.51798 -39.08177 -38.14756 -37.82368 -37.30540 -35.04944 -34.21425 -33.69724 -32.81496 -32.25929 -30.13958 -29.63827 -27.01667 -26.92921 -26.36032 -25.32891 -23.94926 -23.59121 -23.29605 -22.71534 -21.68336 -21.32859 -20.88622 -19.54617 -18.95964 -18.81342 -18.62724 -18.53892 -17.86299 -17.46859 -17.08696 -16.78728 -16.64629 -16.45052 -16.21856 -15.92881 -15.85716 -15.60094 -15.46089 -15.18187 -14.54009 -14.36729 -14.31439 -14.27169 -14.10300 -13.95176 -13.78791 -13.68245 -13.63049 -13.54551 -13.42945 -13.16522 -13.09378 -13.01566 -12.83347 -12.71030 -12.37533 -12.16597 -11.95510 -11.95260 -11.82473 -11.06166 -10.90988 -10.71351 -10.53090 -10.44934 -10.31558 -10.08666 -8.89874 -5.02647 -0.55485 -0.21239 0.02532 0.75151 1.12646 1.14986 1.20644 1.36793 1.48528 1.70057 1.85464 1.91973 2.03142 2.62748 2.73775 3.10816 3.16690 3.20787 3.33065 3.40954 3.48186 3.58068 3.62426 3.68010 3.69476 3.83151 3.97790 4.02262 4.07138 4.19012 4.26960 4.30831 4.37402 4.43432 4.46375 4.49812 4.58853 4.62876 4.65279 4.65745 4.67980 4.78427 4.80840 4.84837 4.88683 4.98408 5.02685 5.05836 5.14918 5.21466 5.42721 5.45639 5.52204 6.00895 6.37449 6.48913 6.75680 7.08006 7.16672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.169 3.831 3 N -0.334 5.334 4 N -0.317 5.317 5 C 0.177 3.823 6 C -0.017 4.017 7 H 0.154 0.846 8 C -0.138 4.138 9 C 0.131 3.869 10 H 0.127 0.873 11 N -0.709 5.709 12 C 0.562 3.438 13 O -0.552 6.552 14 C -0.180 4.180 15 C 0.167 3.833 16 O -0.493 6.493 17 C -0.146 4.146 18 C -0.044 4.044 19 C -0.042 4.042 20 C 0.021 3.979 21 C -0.188 4.188 22 C -0.179 4.179 23 C -0.021 4.021 24 C -0.037 4.037 25 O -0.554 6.554 26 Si 0.756 3.244 27 O -0.178 6.178 28 C -0.054 4.054 29 C -0.118 4.118 30 O -0.230 6.230 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.410 0.590 37 H 0.412 0.588 38 H 0.166 0.834 39 H 0.167 0.833 40 H 0.179 0.821 41 H 0.166 0.834 42 H 0.130 0.870 43 H 0.405 0.595 44 H -0.266 1.266 45 H -0.310 1.310 46 H 0.143 0.857 47 H 0.114 0.886 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.775 -1.666 7.149 7.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.042 4.042 3 N -0.181 5.181 4 N -0.162 5.162 5 C -0.034 4.034 6 C -0.037 4.037 7 H 0.172 0.828 8 C -0.177 4.177 9 C 0.026 3.974 10 H 0.145 0.855 11 N -0.360 5.360 12 C 0.350 3.650 13 O -0.431 6.431 14 C -0.184 4.184 15 C 0.120 3.880 16 O -0.307 6.307 17 C -0.164 4.164 18 C -0.062 4.062 19 C -0.043 4.043 20 C -0.029 4.029 21 C -0.207 4.207 22 C -0.198 4.198 23 C -0.070 4.070 24 C -0.146 4.146 25 O -0.366 6.366 26 Si 0.660 3.340 27 O -0.076 6.076 28 C -0.073 4.073 29 C -0.157 4.157 30 O -0.110 6.110 31 H 0.137 0.863 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.247 0.753 37 H 0.273 0.727 38 H 0.184 0.816 39 H 0.184 0.816 40 H 0.196 0.804 41 H 0.183 0.817 42 H 0.147 0.853 43 H 0.257 0.743 44 H -0.191 1.191 45 H -0.238 1.238 46 H 0.160 0.840 47 H 0.132 0.868 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.966 -1.307 5.614 5.845 hybrid contribution -0.730 0.485 0.052 0.878 sum -1.697 -0.822 5.666 5.971 Atomic orbital electron populations 1.20708 0.76859 1.07213 1.06959 1.28994 0.99362 0.78837 0.97011 1.74375 0.96525 1.27192 1.19971 1.74247 1.12771 1.10455 1.18741 1.28263 0.85472 0.91327 0.98372 1.21257 0.82491 0.99199 1.00797 0.82831 1.23590 0.92709 1.02291 0.99126 1.22393 0.85102 0.94585 0.95305 0.85547 1.45838 1.06932 1.23168 1.60091 1.18215 0.82889 0.85818 0.78090 1.90801 1.82921 1.27345 1.42047 1.20263 0.94689 0.97208 1.06246 1.18853 0.90572 0.88640 0.89897 1.84704 1.89777 1.20330 1.35894 1.21591 1.00619 0.94009 1.00171 1.21421 0.94801 0.96487 0.93444 1.17713 0.94612 0.90669 1.01281 1.20504 0.82708 0.96602 1.03045 1.22172 1.01835 0.93361 1.03284 1.21802 0.92486 1.01654 1.03874 1.21717 0.96881 0.85804 1.02602 1.23942 1.03571 0.90094 0.97000 1.86521 1.58432 1.33143 1.58529 0.93944 0.74148 0.84986 0.80889 1.83892 1.32425 1.32303 1.58976 1.21387 0.99876 0.91288 0.94707 1.23448 0.91283 1.05043 0.95895 1.84809 1.17667 1.38584 1.69894 0.86285 0.86688 0.86743 0.89645 0.89321 0.75294 0.72732 0.81626 0.81603 0.80372 0.81678 0.85293 0.74292 1.19093 1.23811 0.83969 0.86805 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.38 10.51 71.24 0.75 1.12 16 2 C 0.17 0.75 8.48 88.34 0.75 1.50 16 3 N -0.33 -3.81 12.22 -165.50 -2.02 -5.84 16 4 N -0.32 -3.52 11.84 -165.50 -1.96 -5.48 16 5 C 0.18 0.91 7.53 88.34 0.67 1.58 16 6 C -0.02 0.04 4.29 -11.01 -0.05 -0.01 16 7 H 0.15 -1.12 8.14 -2.39 -0.02 -1.14 16 8 C -0.14 -0.03 7.42 31.12 0.23 0.20 16 9 C 0.13 -0.17 4.24 45.52 0.19 0.02 16 10 H 0.13 -0.09 7.46 -2.39 -0.02 -0.11 16 11 N -0.71 -0.62 5.30 -443.18 -2.35 -2.98 16 12 C 0.56 3.51 7.76 86.70 0.67 4.18 16 13 O -0.55 -6.85 14.74 17.00 0.25 -6.60 16 14 C -0.18 -0.74 5.88 -20.04 -0.12 -0.86 16 15 C 0.17 0.56 6.72 22.89 0.15 0.71 16 16 O -0.49 -2.42 11.55 -68.60 -0.79 -3.21 16 17 C -0.15 0.24 9.96 22.30 0.22 0.46 16 18 C -0.04 0.11 9.54 22.55 0.22 0.33 16 19 C -0.04 -0.05 5.87 -20.13 -0.12 -0.17 16 20 C 0.02 0.07 7.03 24.27 0.17 0.24 16 21 C -0.19 -0.17 10.26 22.40 0.23 0.06 16 22 C -0.18 -0.43 10.78 22.13 0.24 -0.19 16 23 C -0.02 -0.08 6.24 24.88 0.16 0.08 16 24 C -0.04 0.03 2.97 71.24 0.21 0.24 16 25 O -0.55 -0.90 12.86 -148.98 -1.92 -2.82 16 26 Si 0.76 0.10 32.11 68.60 2.20 2.30 16 27 O -0.18 -0.93 8.80 -6.51 -0.06 -0.99 16 28 C -0.05 -0.10 9.20 22.79 0.21 0.11 16 29 C -0.12 0.52 7.38 31.12 0.23 0.75 16 30 O -0.23 -1.11 10.87 -3.60 -0.04 -1.15 16 31 H 0.12 -1.14 8.14 -2.38 -0.02 -1.16 16 32 H 0.11 -0.85 8.14 -2.39 -0.02 -0.87 16 33 H 0.11 -1.15 8.14 -2.39 -0.02 -1.17 16 34 H 0.08 0.36 7.78 -2.38 -0.02 0.34 16 35 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 36 H 0.41 -0.89 6.75 -92.71 -0.63 -1.52 16 37 H 0.41 -1.14 9.06 -74.06 -0.67 -1.81 16 38 H 0.17 -1.01 8.06 -2.91 -0.02 -1.04 16 39 H 0.17 -1.37 6.96 -2.91 -0.02 -1.39 16 40 H 0.18 -0.90 7.25 -2.91 -0.02 -0.92 16 41 H 0.17 -0.14 8.06 -2.91 -0.02 -0.16 16 42 H 0.13 -0.93 7.96 -2.39 -0.02 -0.95 16 43 H 0.40 -2.97 8.74 -74.06 -0.65 -3.62 16 44 H -0.27 -0.57 7.11 99.48 0.71 0.14 16 45 H -0.31 -3.31 7.11 99.48 0.71 -2.60 16 46 H 0.14 -0.11 6.24 -2.91 -0.02 -0.13 16 47 H 0.11 -0.95 8.14 -2.38 -0.02 -0.97 16 48 H 0.09 -0.26 8.07 -2.39 -0.02 -0.28 16 Total: 0.00 -33.26 417.81 -2.50 -35.76 By element: Atomic # 1 Polarization: -18.54 SS G_CDS: -0.83 Total: -19.37 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 5.01 Total: 10.36 kcal Atomic # 7 Polarization: -7.96 SS G_CDS: -6.33 Total: -14.29 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -2.55 Total: -14.76 kcal Atomic # 14 Polarization: 0.10 SS G_CDS: 2.20 Total: 2.30 kcal Total: -33.26 -2.50 -35.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_13259648.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.041 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds