Wall clock time and date at job start Sun Mar 7 2021 04:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30274 * 126.28371 * 2 1 4 4 N 1.28674 * 109.37972 * 180.02562 * 3 2 1 5 5 C 1.30274 * 109.37802 * 359.97438 * 4 3 2 6 6 C 1.50710 * 126.27763 * 180.02562 * 5 4 3 7 7 H 1.09000 * 112.84414 * 170.28920 * 6 5 4 8 8 C 1.53771 * 113.61644 * 301.48798 * 6 5 4 9 9 C 1.53774 * 87.08200 * 139.97902 * 8 6 5 10 10 H 1.09002 * 113.61276 * 89.11902 * 9 8 6 11 11 N 1.46500 * 113.61965 * 219.93579 * 9 8 6 12 12 C 1.34778 * 120.00210 * 205.00443 * 11 9 8 13 13 O 1.21624 * 119.99895 * 359.97438 * 12 11 9 14 14 C 1.47265 * 119.99774 * 179.97438 * 12 11 9 15 15 C 1.36761 * 126.94517 * 359.68422 * 14 12 11 16 16 N 1.34657 * 108.39754 * 179.87211 * 15 14 12 17 17 C 1.46505 * 124.85058 * 180.13930 * 16 15 14 18 18 C 1.36441 * 110.29793 * 0.40690 * 16 15 14 19 19 C 1.50703 * 125.57296 * 179.73151 * 18 16 15 20 20 O 1.42897 * 109.47094 * 329.99988 * 19 18 16 21 21 Si 1.86301 * 109.47091 * 209.99907 * 19 18 16 22 22 C 1.34485 * 108.85570 * 359.74853 * 18 16 15 23 23 C 1.53774 * 113.61214 * 39.09880 * 6 5 4 24 24 O 1.34356 * 107.43917 * 0.02562 * 5 4 3 25 25 H 1.08997 * 109.46805 * 269.96075 * 1 2 3 26 26 H 1.08999 * 109.47032 * 29.95446 * 1 2 3 27 27 H 1.08995 * 109.47586 * 149.95585 * 1 2 3 28 28 H 1.08993 * 113.61657 * 254.53467 * 8 6 5 29 29 H 1.09004 * 113.61461 * 25.43300 * 8 6 5 30 30 H 0.97003 * 119.99804 * 24.99793 * 11 9 8 31 31 H 1.08005 * 125.80237 * 359.97438 * 15 14 12 32 32 H 1.08997 * 109.46882 * 270.31017 * 17 16 15 33 33 H 1.09001 * 109.47365 * 30.30816 * 17 16 15 34 34 H 1.08995 * 109.47155 * 150.30627 * 17 16 15 35 35 H 1.09003 * 109.46899 * 89.99896 * 19 18 16 36 36 H 0.96702 * 113.99855 * 300.00388 * 20 19 18 37 37 H 1.48498 * 110.00041 * 58.67925 * 21 19 18 38 38 H 1.48499 * 110.00071 * 179.97438 * 21 19 18 39 39 H 1.08002 * 126.83490 * 179.97438 * 22 18 16 40 40 H 1.09001 * 113.61849 * 334.56328 * 23 6 5 41 41 H 1.09007 * 113.61812 * 105.47025 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2780 1.0501 0.0000 4 7 3.5091 0.6760 -0.0005 5 6 3.5653 -0.6255 -0.0004 6 6 4.8177 -1.4640 -0.0003 7 1 4.6185 -2.5221 0.1693 8 6 5.7389 -1.1954 -1.2018 9 6 6.9191 -1.3132 -0.2231 10 1 7.2957 -2.3302 -0.1136 11 7 7.9830 -0.3357 -0.4661 12 6 9.2443 -0.6005 -0.0720 13 8 9.4993 -1.6508 0.4858 14 6 10.3138 0.3818 -0.3168 15 6 10.1889 1.5965 -0.9328 16 7 11.3983 2.1882 -0.9547 17 6 11.6749 3.5069 -1.5299 18 6 12.3306 1.3816 -0.3700 19 6 13.7947 1.7031 -0.2149 20 8 14.2142 2.5443 -1.2912 21 14 14.7833 0.1242 -0.2391 22 6 11.7294 0.2524 0.0450 23 6 5.9379 -0.8979 0.8882 24 8 2.3021 -1.0831 -0.0002 25 1 -0.3633 -0.0007 1.0277 26 1 -0.3633 0.8904 -0.5131 27 1 -0.3634 -0.8895 -0.5145 28 1 5.7156 -1.9832 -1.9546 29 1 5.6223 -0.1986 -1.6272 30 1 7.7795 0.5020 -0.9107 31 1 9.2753 2.0114 -1.3321 32 1 11.9358 3.3967 -2.5824 33 1 10.7893 4.1360 -1.4390 34 1 12.5052 3.9692 -0.9961 35 1 13.9553 2.2179 0.7324 36 1 14.0999 2.1495 -2.1665 37 1 14.5481 -0.6028 -1.5124 38 1 16.2290 0.4278 -0.0876 39 1 12.1961 -0.5835 0.5449 40 1 5.8758 0.1803 1.0353 41 1 6.0751 -1.4461 1.8203 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_13287730.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:06:04 Heat of formation + Delta-G solvation = 47.393030 kcal Electronic energy + Delta-G solvation = -25799.472504 eV Core-core repulsion = 21877.922984 eV Total energy + Delta-G solvation = -3921.549521 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.30969 -42.44646 -40.93903 -39.20535 -37.86930 -37.25518 -34.86001 -33.79753 -33.47136 -31.40340 -29.62879 -27.76280 -26.85726 -26.78610 -26.08076 -24.23099 -23.60390 -22.84557 -21.24920 -20.70970 -20.45916 -18.99862 -18.55834 -18.47504 -17.49790 -17.28710 -16.93194 -16.78515 -16.35888 -15.85294 -15.56283 -15.50362 -15.42032 -15.30229 -14.66668 -14.39039 -14.23931 -14.07072 -13.70782 -13.61675 -13.58624 -13.43861 -13.41023 -13.18767 -13.09028 -12.97039 -12.66623 -12.40768 -12.27951 -11.99584 -11.89566 -11.84660 -10.96896 -10.94004 -10.47241 -10.08307 -9.55891 -9.19693 -4.88608 0.07132 0.74743 1.04890 1.20551 1.25709 1.46677 1.63951 1.81665 2.06946 2.30945 2.55933 2.80275 3.21590 3.23597 3.40610 3.51456 3.59036 3.71358 3.76038 3.87983 3.96729 4.04017 4.27656 4.31871 4.40093 4.45084 4.49071 4.53236 4.53508 4.56186 4.65878 4.69022 4.70917 4.77609 4.85116 4.90391 4.93068 5.00007 5.02438 5.19613 5.55160 5.68883 5.98182 6.23057 6.35814 6.64719 7.21278 7.35214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.167 3.833 3 N -0.331 5.331 4 N -0.312 5.312 5 C 0.177 3.823 6 C -0.019 4.019 7 H 0.149 0.851 8 C -0.117 4.117 9 C 0.131 3.869 10 H 0.118 0.882 11 N -0.707 5.707 12 C 0.592 3.408 13 O -0.587 6.587 14 C -0.260 4.260 15 C 0.068 3.932 16 N -0.428 5.428 17 C 0.062 3.938 18 C -0.024 4.024 19 C -0.045 4.045 20 O -0.541 6.541 21 Si 0.775 3.225 22 C -0.154 4.154 23 C -0.133 4.133 24 O -0.232 6.232 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.114 0.886 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.412 0.588 31 H 0.204 0.796 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.132 0.868 36 H 0.386 0.614 37 H -0.294 1.294 38 H -0.289 1.289 39 H 0.157 0.843 40 H 0.091 0.909 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.718 1.008 -2.597 4.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.044 4.044 3 N -0.178 5.178 4 N -0.157 5.157 5 C -0.035 4.035 6 C -0.039 4.039 7 H 0.167 0.833 8 C -0.156 4.156 9 C 0.026 3.974 10 H 0.135 0.865 11 N -0.358 5.358 12 C 0.382 3.618 13 O -0.469 6.469 14 C -0.270 4.270 15 C -0.069 4.069 16 N -0.102 5.102 17 C -0.078 4.078 18 C -0.133 4.133 19 C -0.155 4.155 20 O -0.349 6.349 21 Si 0.679 3.321 22 C -0.178 4.178 23 C -0.173 4.173 24 O -0.112 6.112 25 H 0.134 0.866 26 H 0.135 0.865 27 H 0.132 0.868 28 H 0.124 0.876 29 H 0.115 0.885 30 H 0.249 0.751 31 H 0.220 0.780 32 H 0.105 0.895 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.149 0.851 36 H 0.235 0.765 37 H -0.221 1.221 38 H -0.217 1.217 39 H 0.174 0.826 40 H 0.109 0.891 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.308 1.824 -2.265 3.712 hybrid contribution -0.708 -0.221 -1.117 1.341 sum -3.015 1.603 -3.382 4.806 Atomic orbital electron populations 1.20697 0.76975 1.07259 1.06825 1.28977 0.99356 0.78875 0.97216 1.74367 0.96538 1.27044 1.19823 1.74226 1.12651 1.10213 1.18623 1.28260 0.85372 0.91416 0.98433 1.21247 0.82650 0.99112 1.00937 0.83334 1.23422 0.91424 1.04779 0.95935 1.22320 0.85174 0.94590 0.95352 0.86457 1.45635 1.06890 1.22035 1.61230 1.17645 0.82254 0.85172 0.76723 1.90747 1.83447 1.27831 1.44828 1.20349 0.94518 0.97641 1.14524 1.22384 0.90194 0.93109 1.01234 1.43717 1.06627 1.16022 1.43814 1.22432 1.04713 0.80444 1.00193 1.20872 0.92921 0.92993 1.06532 1.24750 0.90559 1.06542 0.93614 1.86558 1.86564 1.43814 1.17943 0.93343 0.75699 0.76211 0.86822 1.21826 0.92426 0.98332 1.05204 1.23604 0.92350 1.02622 0.98695 1.84812 1.17779 1.38686 1.69880 0.86565 0.86516 0.86792 0.87555 0.88514 0.75117 0.77977 0.89462 0.88054 0.88798 0.85052 0.76480 1.22095 1.21658 0.82581 0.89091 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.42 10.51 71.24 0.75 1.17 16 2 C 0.17 0.57 8.48 88.34 0.75 1.32 16 3 N -0.33 -3.21 12.22 -165.50 -2.02 -5.23 16 4 N -0.31 -2.82 11.87 -165.50 -1.96 -4.78 16 5 C 0.18 0.71 7.52 88.34 0.66 1.38 16 6 C -0.02 0.05 4.28 -11.02 -0.05 0.01 16 7 H 0.15 -1.05 8.14 -2.39 -0.02 -1.07 16 8 C -0.12 0.57 7.38 31.11 0.23 0.80 16 9 C 0.13 -0.21 4.24 45.57 0.19 -0.02 16 10 H 0.12 0.07 7.46 -2.39 -0.02 0.05 16 11 N -0.71 0.29 5.35 -443.18 -2.37 -2.08 16 12 C 0.59 4.02 7.81 86.62 0.68 4.70 16 13 O -0.59 -8.82 16.57 -4.11 -0.07 -8.89 16 14 C -0.26 -1.08 6.29 -19.04 -0.12 -1.20 16 15 C 0.07 -0.15 10.83 83.91 0.91 0.76 16 16 N -0.43 0.85 3.09 -533.24 -1.65 -0.79 16 17 C 0.06 -0.46 9.81 127.77 1.25 0.79 16 18 C -0.02 -0.02 6.14 40.98 0.25 0.23 16 19 C -0.04 0.08 2.87 71.24 0.20 0.28 16 20 O -0.54 0.92 10.32 -148.98 -1.54 -0.62 16 21 Si 0.78 -0.55 31.12 68.60 2.13 1.58 16 22 C -0.15 -0.66 9.49 23.62 0.22 -0.43 16 23 C -0.13 0.15 7.44 31.18 0.23 0.38 16 24 O -0.23 -0.96 10.87 -3.59 -0.04 -1.00 16 25 H 0.12 -1.13 8.14 -2.39 -0.02 -1.15 16 26 H 0.12 -1.00 8.14 -2.39 -0.02 -1.02 16 27 H 0.11 -1.22 8.14 -2.39 -0.02 -1.24 16 28 H 0.11 -0.81 8.14 -2.39 -0.02 -0.83 16 29 H 0.10 -0.39 8.07 -2.39 -0.02 -0.41 16 30 H 0.41 -2.35 7.67 -92.71 -0.71 -3.06 16 31 H 0.20 -2.01 7.45 -2.91 -0.02 -2.03 16 32 H 0.09 -0.83 8.14 -2.39 -0.02 -0.85 16 33 H 0.10 -1.10 8.13 -2.39 -0.02 -1.12 16 34 H 0.09 -0.53 6.73 -2.39 -0.02 -0.55 16 35 H 0.13 -0.46 7.96 -2.39 -0.02 -0.48 16 36 H 0.39 -2.37 8.70 -74.06 -0.64 -3.02 16 37 H -0.29 -1.61 7.11 99.48 0.71 -0.90 16 38 H -0.29 -1.51 7.11 99.48 0.71 -0.80 16 39 H 0.16 0.49 6.89 -2.91 -0.02 0.47 16 40 H 0.09 0.14 7.81 -2.39 -0.02 0.12 16 41 H 0.09 -0.08 8.14 -2.38 -0.02 -0.10 16 Total: 0.00 -28.05 352.58 -1.58 -29.63 By element: Atomic # 1 Polarization: -17.76 SS G_CDS: -0.23 Total: -17.99 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 6.17 Total: 10.17 kcal Atomic # 7 Polarization: -4.88 SS G_CDS: -8.00 Total: -12.88 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -1.64 Total: -10.51 kcal Atomic # 14 Polarization: -0.55 SS G_CDS: 2.13 Total: 1.58 kcal Total: -28.05 -1.58 -29.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_13287730.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.023 kcal (2) G-P(sol) polarization free energy of solvation -28.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds