Wall clock time and date at job start Sun Mar 7 2021 04:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30273 * 126.27792 * 2 1 4 4 N 1.28671 * 109.37805 * 179.97438 * 3 2 1 5 5 C 1.30279 * 109.38148 * 359.97438 * 4 3 2 6 6 C 1.50697 * 126.28332 * 179.97438 * 5 4 3 7 7 H 1.08997 * 112.84667 * 168.77809 * 6 5 4 8 8 C 1.53777 * 113.61577 * 299.97693 * 6 5 4 9 9 C 1.53787 * 87.08116 * 139.98210 * 8 6 5 10 10 H 1.08993 * 113.61833 * 89.11318 * 9 8 6 11 11 N 1.46506 * 113.61118 * 220.02078 * 9 8 6 12 12 C 1.34777 * 119.99588 * 204.99579 * 11 9 8 13 13 O 1.21585 * 120.00236 * 0.02562 * 12 11 9 14 14 C 1.47606 * 119.99729 * 179.97438 * 12 11 9 15 15 C 1.39709 * 120.08510 * 0.02562 * 14 12 11 16 16 C 1.37733 * 119.90661 * 180.02562 * 15 14 12 17 17 C 1.50698 * 119.95404 * 180.02562 * 16 15 14 18 18 C 1.38969 * 120.08548 * 0.02562 * 16 15 14 19 19 O 1.35720 * 119.90934 * 179.97438 * 18 16 15 20 20 C 1.39015 * 120.18040 * 0.02562 * 18 16 15 21 21 C 1.50706 * 119.95513 * 179.97438 * 20 18 16 22 22 O 1.42900 * 109.46940 * 284.99840 * 21 20 18 23 23 Si 1.86300 * 109.46981 * 164.99950 * 21 20 18 24 24 C 1.37677 * 120.08757 * 359.67396 * 20 18 16 25 25 C 1.53781 * 113.61221 * 37.47740 * 6 5 4 26 26 O 1.34353 * 126.28124 * 179.68242 * 2 1 3 27 27 H 1.09001 * 109.46953 * 90.02601 * 1 2 3 28 28 H 1.09000 * 109.47318 * 210.02199 * 1 2 3 29 29 H 1.09000 * 109.47161 * 330.02829 * 1 2 3 30 30 H 1.09000 * 113.61154 * 254.52335 * 8 6 5 31 31 H 1.08995 * 113.61493 * 25.34833 * 8 6 5 32 32 H 0.96995 * 119.99776 * 24.99460 * 11 9 8 33 33 H 1.07993 * 120.04935 * 0.02600 * 15 14 12 34 34 H 1.09002 * 109.47366 * 89.99918 * 17 16 15 35 35 H 1.09001 * 109.46966 * 210.00093 * 17 16 15 36 36 H 1.09004 * 109.47149 * 329.99909 * 17 16 15 37 37 H 0.96703 * 113.99864 * 89.99963 * 19 18 16 38 38 H 1.09002 * 109.47075 * 44.99608 * 21 20 18 39 39 H 0.96695 * 114.00012 * 180.02562 * 22 21 20 40 40 H 1.48495 * 110.00031 * 59.99568 * 23 21 20 41 41 H 1.48503 * 109.99886 * 181.31898 * 23 21 20 42 42 H 1.08005 * 120.04748 * 180.32431 * 24 20 18 43 43 H 1.09000 * 113.61454 * 334.56368 * 25 6 5 44 44 H 1.08994 * 113.61677 * 105.46959 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6762 0.0005 5 6 3.5654 -0.6254 0.0015 6 6 4.8177 -1.4638 0.0018 7 1 4.6213 -2.5178 0.1981 8 6 5.7210 -1.2223 -1.2191 9 6 6.9157 -1.3183 -0.2555 10 1 7.2940 -2.3326 -0.1287 11 7 7.9747 -0.3453 -0.5351 12 6 9.2420 -0.6006 -0.1540 13 8 9.5065 -1.6386 0.4214 14 6 10.3091 0.3794 -0.4362 15 6 10.0073 1.5723 -1.0977 16 6 11.0060 2.4839 -1.3597 17 6 10.6816 3.7713 -2.0727 18 6 12.3124 2.2181 -0.9673 19 8 13.2938 3.1187 -1.2277 20 6 12.6169 1.0317 -0.3098 21 6 14.0354 0.7483 0.1130 22 8 14.8107 0.3880 -1.0321 23 14 14.0495 -0.6544 1.3389 24 6 11.6232 0.1181 -0.0388 25 6 5.9518 -0.8766 0.8585 26 8 2.3021 -1.0830 0.0060 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5134 30 1 5.6867 -2.0271 -1.9535 31 1 5.5968 -0.2360 -1.6659 32 1 7.7637 0.4825 -0.9945 33 1 8.9925 1.7794 -1.4033 34 1 10.4246 4.5372 -1.3409 35 1 11.5480 4.0957 -2.6491 36 1 9.8375 3.6123 -2.7438 37 1 13.4246 3.7715 -0.5264 38 1 14.4617 1.6389 0.5747 39 1 15.7364 0.1910 -0.8342 40 1 13.4707 -1.8745 0.7214 41 1 15.4395 -0.9227 1.7878 42 1 11.8596 -0.8011 0.4768 43 1 5.8918 0.2049 0.9805 44 1 6.1039 -1.4022 1.8011 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_13287732.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:06:08 Heat of formation + Delta-G solvation = -20.443758 kcal Electronic energy + Delta-G solvation = -29420.777246 eV Core-core repulsion = 25114.803680 eV Total energy + Delta-G solvation = -4305.973566 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.31151 -41.79172 -40.86890 -39.50449 -37.90875 -37.51116 -37.25652 -35.10202 -34.08950 -33.61806 -31.82202 -29.61295 -27.99547 -27.15761 -26.88801 -26.67811 -24.95840 -23.68903 -23.16413 -21.98758 -21.53509 -20.81225 -19.51825 -18.67123 -18.60644 -18.53419 -18.47271 -17.74400 -17.04089 -16.64693 -16.45766 -16.13288 -16.02950 -15.70197 -15.49386 -15.33685 -14.88889 -14.55763 -14.31873 -14.21588 -13.99945 -13.74171 -13.67372 -13.63298 -13.59751 -13.52588 -13.42987 -12.97138 -12.92642 -12.91002 -12.71409 -12.63691 -12.33491 -11.96728 -11.92621 -11.86813 -11.47862 -11.13002 -10.52590 -10.47722 -10.22929 -9.96843 -9.64476 -5.01671 -0.39459 0.06581 0.06977 1.19482 1.19827 1.25484 1.49686 1.58753 1.88083 2.03347 2.53111 2.77990 3.09821 3.20429 3.31284 3.36778 3.48051 3.58340 3.64350 3.66384 3.73286 3.74747 3.99660 4.02547 4.14589 4.31145 4.34298 4.38086 4.46606 4.51893 4.53527 4.62845 4.63517 4.67534 4.69814 4.73380 4.82177 4.82878 4.89378 5.02092 5.04664 5.05914 5.12989 5.21031 5.32392 5.44036 5.61345 6.40416 6.55088 6.77024 7.07237 7.21183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.167 3.833 3 N -0.331 5.331 4 N -0.310 5.310 5 C 0.176 3.824 6 C -0.019 4.019 7 H 0.149 0.851 8 C -0.119 4.119 9 C 0.127 3.873 10 H 0.120 0.880 11 N -0.700 5.700 12 C 0.564 3.436 13 O -0.574 6.574 14 C -0.153 4.153 15 C -0.055 4.055 16 C -0.122 4.122 17 C -0.111 4.111 18 C 0.159 3.841 19 O -0.495 6.495 20 C -0.119 4.119 21 C -0.065 4.065 22 O -0.553 6.553 23 Si 0.744 3.256 24 C -0.064 4.064 25 C -0.132 4.132 26 O -0.232 6.232 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.415 0.585 33 H 0.162 0.838 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.413 0.587 38 H 0.103 0.897 39 H 0.394 0.606 40 H -0.309 1.309 41 H -0.274 1.274 42 H 0.130 0.870 43 H 0.094 0.906 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.289 2.945 1.005 5.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.044 4.044 3 N -0.177 5.177 4 N -0.156 5.156 5 C -0.036 4.036 6 C -0.039 4.039 7 H 0.167 0.833 8 C -0.157 4.157 9 C 0.022 3.978 10 H 0.138 0.862 11 N -0.352 5.352 12 C 0.352 3.648 13 O -0.454 6.454 14 C -0.156 4.156 15 C -0.074 4.074 16 C -0.122 4.122 17 C -0.168 4.168 18 C 0.113 3.887 19 O -0.308 6.308 20 C -0.120 4.120 21 C -0.175 4.175 22 O -0.363 6.363 23 Si 0.651 3.349 24 C -0.083 4.083 25 C -0.171 4.171 26 O -0.112 6.112 27 H 0.136 0.864 28 H 0.131 0.869 29 H 0.134 0.866 30 H 0.125 0.875 31 H 0.116 0.884 32 H 0.254 0.746 33 H 0.179 0.821 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.274 0.726 38 H 0.121 0.879 39 H 0.245 0.755 40 H -0.237 1.237 41 H -0.201 1.201 42 H 0.147 0.853 43 H 0.113 0.887 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.963 2.490 0.789 4.747 hybrid contribution 0.601 -0.773 -0.416 1.063 sum -3.363 1.717 0.374 3.794 Atomic orbital electron populations 1.20700 0.77011 1.07201 1.06877 1.28968 0.99344 0.78869 0.97185 1.74373 0.96531 1.26999 1.19799 1.74226 1.12657 1.10160 1.18525 1.28230 0.85363 0.91413 0.98568 1.21225 0.82714 0.99125 1.00861 0.83310 1.23446 0.91387 1.05040 0.95862 1.22403 0.85147 0.94520 0.95705 0.86184 1.45730 1.06477 1.23277 1.59691 1.18323 0.83134 0.85578 0.77726 1.90784 1.83205 1.28035 1.43401 1.19790 0.93513 0.96771 1.05511 1.21370 1.00470 0.90800 0.94734 1.20450 0.91737 0.99048 1.00994 1.20766 1.03114 0.92663 1.00229 1.18420 0.87246 0.89561 0.93447 1.84730 1.53662 1.44452 1.48002 1.19663 0.94529 0.95850 1.01970 1.24658 0.89870 1.08647 0.94290 1.86588 1.26656 1.90499 1.32584 0.94317 0.80986 0.76396 0.83238 1.21075 0.91959 0.98143 0.97099 1.23572 0.91930 1.02771 0.98808 1.84812 1.17789 1.38700 1.69874 0.86430 0.86895 0.86566 0.87541 0.88352 0.74647 0.82079 0.89268 0.91197 0.89933 0.72596 0.87902 0.75546 1.23731 1.20063 0.85294 0.88715 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.45 10.51 71.24 0.75 1.20 16 2 C 0.17 0.48 8.48 88.34 0.75 1.23 16 3 N -0.33 -2.98 12.22 -165.51 -2.02 -5.00 16 4 N -0.31 -2.54 11.83 -165.49 -1.96 -4.50 16 5 C 0.18 0.56 7.53 88.34 0.67 1.23 16 6 C -0.02 0.07 4.29 -11.02 -0.05 0.02 16 7 H 0.15 -1.19 8.14 -2.39 -0.02 -1.20 16 8 C -0.12 0.67 7.38 31.12 0.23 0.90 16 9 C 0.13 -0.35 4.24 45.52 0.19 -0.16 16 10 H 0.12 -0.10 7.46 -2.39 -0.02 -0.11 16 11 N -0.70 1.02 5.30 -443.11 -2.35 -1.33 16 12 C 0.56 3.16 7.76 86.72 0.67 3.83 16 13 O -0.57 -7.70 15.94 -3.98 -0.06 -7.77 16 14 C -0.15 -0.61 5.87 -20.08 -0.12 -0.73 16 15 C -0.06 0.08 9.18 22.51 0.21 0.28 16 16 C -0.12 0.07 5.89 -19.81 -0.12 -0.05 16 17 C -0.11 0.54 9.78 71.24 0.70 1.24 16 18 C 0.16 0.33 6.66 22.63 0.15 0.48 16 19 O -0.49 0.16 11.84 -90.42 -1.07 -0.91 16 20 C -0.12 -0.51 5.30 -19.81 -0.11 -0.62 16 21 C -0.07 -0.11 2.36 71.24 0.17 0.06 16 22 O -0.55 -2.97 12.86 -148.98 -1.92 -4.88 16 23 Si 0.74 1.63 30.18 68.60 2.07 3.70 16 24 C -0.06 -0.42 8.20 22.50 0.18 -0.23 16 25 C -0.13 0.34 7.42 31.12 0.23 0.57 16 26 O -0.23 -0.82 10.87 -3.60 -0.04 -0.86 16 27 H 0.12 -1.23 8.14 -2.39 -0.02 -1.24 16 28 H 0.11 -1.23 8.14 -2.39 -0.02 -1.25 16 29 H 0.12 -1.02 8.14 -2.39 -0.02 -1.04 16 30 H 0.11 -0.87 8.14 -2.39 -0.02 -0.89 16 31 H 0.10 -0.48 8.07 -2.39 -0.02 -0.50 16 32 H 0.41 -2.71 6.75 -92.71 -0.63 -3.34 16 33 H 0.16 -1.31 6.39 -2.91 -0.02 -1.32 16 34 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 35 H 0.07 -0.19 7.52 -2.39 -0.02 -0.21 16 36 H 0.08 -0.56 8.08 -2.38 -0.02 -0.58 16 37 H 0.41 -4.27 9.06 -74.05 -0.67 -4.94 16 38 H 0.10 -0.43 7.82 -2.39 -0.02 -0.45 16 39 H 0.39 -1.19 8.74 -74.06 -0.65 -1.83 16 40 H -0.31 -3.67 6.76 99.48 0.67 -2.99 16 41 H -0.27 -1.26 7.11 99.48 0.71 -0.56 16 42 H 0.13 1.16 4.47 -2.91 -0.01 1.14 16 43 H 0.09 -0.02 7.78 -2.39 -0.02 -0.04 16 44 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 Total: 0.00 -30.94 374.93 -3.68 -34.63 By element: Atomic # 1 Polarization: -21.49 SS G_CDS: -0.84 Total: -22.34 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 4.51 Total: 9.26 kcal Atomic # 7 Polarization: -4.50 SS G_CDS: -6.33 Total: -10.83 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -3.09 Total: -14.41 kcal Atomic # 14 Polarization: 1.63 SS G_CDS: 2.07 Total: 3.70 kcal Total: -30.94 -3.68 -34.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_13287732.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.184 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds