Wall clock time and date at job start Sun Mar 7 2021 04:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30273 * 126.28168 * 2 1 4 4 N 1.28664 * 109.37739 * 179.97438 * 3 2 1 5 5 C 1.30276 * 109.38577 * 0.02562 * 4 3 2 6 6 C 1.50697 * 126.28487 * 179.97438 * 5 4 3 7 7 H 1.08996 * 112.84754 * 168.82974 * 6 5 4 8 8 C 1.53784 * 113.61203 * 300.02101 * 6 5 4 9 9 C 1.53782 * 87.08015 * 140.06916 * 8 6 5 10 10 H 1.08997 * 113.61507 * 89.20356 * 9 8 6 11 11 N 1.46503 * 113.61049 * 220.02032 * 9 8 6 12 12 C 1.34771 * 119.99689 * 204.99839 * 11 9 8 13 13 O 1.21276 * 120.00440 * 0.02562 * 12 11 9 14 14 C 1.50705 * 119.99939 * 180.02562 * 12 11 9 15 15 C 1.50704 * 109.46952 * 180.02562 * 14 12 11 16 16 C 1.38273 * 119.93292 * 90.00128 * 15 14 12 17 17 C 1.38123 * 120.06270 * 179.97438 * 16 15 14 18 18 C 1.38825 * 119.93706 * 359.97438 * 17 16 15 19 19 N 1.40199 * 120.06819 * 179.97438 * 18 17 16 20 20 C 1.36566 * 125.66827 * 310.15449 * 19 18 17 21 21 C 1.34855 * 108.20020 * 180.29869 * 20 19 18 22 22 C 1.40937 * 107.46688 * 359.73745 * 21 20 19 23 23 C 1.34851 * 107.47041 * 0.02562 * 22 21 20 24 24 C 1.50696 * 125.90145 * 179.97438 * 23 22 21 25 25 O 1.42903 * 109.47131 * 150.02340 * 24 23 22 26 26 Si 1.86305 * 109.47185 * 30.02881 * 24 23 22 27 27 C 1.38832 * 119.86729 * 0.25509 * 18 17 16 28 28 C 1.38122 * 119.93024 * 359.49119 * 27 18 17 29 29 C 1.53777 * 113.69397 * 37.55316 * 6 5 4 30 30 O 1.34361 * 107.43142 * 0.23844 * 5 4 3 31 31 H 1.09003 * 109.46869 * 90.02871 * 1 2 3 32 32 H 1.08997 * 109.47403 * 210.02446 * 1 2 3 33 33 H 1.08999 * 109.46991 * 330.03355 * 1 2 3 34 34 H 1.08994 * 113.61493 * 25.51639 * 8 6 5 35 35 H 1.09003 * 113.68679 * 254.62553 * 8 6 5 36 36 H 0.97002 * 120.00341 * 24.99558 * 11 9 8 37 37 H 1.08995 * 109.47210 * 60.00046 * 14 12 11 38 38 H 1.09003 * 109.46765 * 299.99889 * 14 12 11 39 39 H 1.07995 * 119.97405 * 359.95461 * 16 15 14 40 40 H 1.08006 * 120.03144 * 180.02562 * 17 16 15 41 41 H 1.07998 * 125.90337 * 0.03519 * 20 19 18 42 42 H 1.07995 * 126.26632 * 179.73820 * 21 20 19 43 43 H 1.07994 * 126.26762 * 180.02562 * 22 21 20 44 44 H 1.08999 * 109.47358 * 270.02700 * 24 23 22 45 45 H 0.96700 * 114.00311 * 300.00591 * 25 24 23 46 46 H 1.48499 * 109.99670 * 58.67633 * 26 24 23 47 47 H 1.48497 * 110.00233 * 179.97438 * 26 24 23 48 48 H 1.07998 * 120.03339 * 179.72044 * 27 18 17 49 49 H 1.08007 * 119.96544 * 180.25120 * 28 27 18 50 50 H 1.09002 * 113.61373 * 105.45708 * 29 6 5 51 51 H 1.09003 * 113.61422 * 334.56346 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6760 0.0005 5 6 3.5654 -0.6255 0.0004 6 6 4.8176 -1.4639 0.0003 7 1 4.6210 -2.5182 0.1947 8 6 5.7217 -1.2206 -1.2197 9 6 6.9158 -1.3203 -0.2559 10 1 7.2939 -2.3352 -0.1326 11 7 7.9761 -0.3480 -0.5327 12 6 9.2429 -0.6057 -0.1518 13 8 9.5053 -1.6427 0.4197 14 6 10.3336 0.3947 -0.4360 15 6 11.6457 -0.1304 0.0871 16 6 12.4558 -0.8988 -0.7285 17 6 13.6592 -1.3811 -0.2519 18 6 14.0554 -1.0932 1.0471 19 7 15.2760 -1.5817 1.5338 20 6 15.7041 -2.8761 1.4548 21 6 16.9180 -2.9546 2.0369 22 6 17.2558 -1.6624 2.4868 23 6 16.2357 -0.8417 2.1636 24 6 16.1644 0.6355 2.4528 25 8 15.3843 1.2812 1.4445 26 14 17.8847 1.3507 2.4598 27 6 13.2376 -0.3254 1.8652 28 6 12.0378 0.1584 1.3813 29 6 5.9521 -0.8802 0.8587 30 8 2.3021 -1.0831 -0.0057 31 1 -0.3633 -0.0005 -1.0277 32 1 -0.3634 -0.8897 0.5142 33 1 -0.3633 0.8903 0.5133 34 1 5.5999 -0.2325 -1.6633 35 1 5.6875 -2.0227 -1.9570 36 1 7.7664 0.4813 -0.9902 37 1 10.0978 1.3387 0.0553 38 1 10.4092 0.5539 -1.5117 39 1 12.1473 -1.1224 -1.7390 40 1 14.2918 -1.9809 -0.8896 41 1 15.1621 -3.6962 1.0076 42 1 17.5209 -3.8447 2.1396 43 1 18.1651 -1.3809 2.9969 44 1 15.7014 0.7931 3.4269 45 1 15.7381 1.1823 0.5500 46 1 18.5383 1.1142 1.1476 47 1 17.8280 2.8073 2.7433 48 1 13.5411 -0.1036 2.8776 49 1 11.4031 0.7592 2.0160 50 1 6.1032 -1.4081 1.8003 51 1 5.8933 0.2011 0.9834 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_13287746.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:06:12 Heat of formation + Delta-G solvation = 84.514424 kcal Electronic energy + Delta-G solvation = -35089.005090 eV Core-core repulsion = 30345.085474 eV Total energy + Delta-G solvation = -4743.919616 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 395.168 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.34228 -42.70352 -41.35161 -40.18035 -39.17218 -37.86062 -37.28849 -34.91759 -34.82427 -33.59509 -32.16314 -31.78890 -31.03884 -29.69865 -28.03241 -26.90802 -26.56063 -26.06794 -24.06609 -23.99024 -23.59202 -22.96104 -21.55652 -21.35386 -20.85857 -20.61817 -19.32330 -18.63778 -18.52431 -18.06337 -17.64862 -17.40032 -16.99973 -16.62909 -16.40871 -16.29845 -15.85511 -15.81207 -15.51339 -15.46145 -15.28484 -14.88032 -14.53281 -14.49668 -14.36236 -14.26014 -14.16301 -13.95599 -13.77089 -13.65496 -13.61381 -13.46769 -13.29297 -13.18183 -13.00947 -12.95689 -12.80127 -12.52357 -12.40669 -12.34084 -12.10791 -11.94194 -11.92813 -11.89699 -11.02309 -10.90855 -10.50575 -10.30260 -10.09664 -9.98212 -9.15481 -9.03930 -4.90434 -0.01536 0.03963 0.35057 1.06410 1.17505 1.22448 1.41021 1.60361 1.65755 1.83261 1.99924 2.11299 2.17418 2.69817 2.79198 3.19282 3.23456 3.34967 3.47728 3.61376 3.65230 3.66733 3.70706 3.75776 3.87786 3.95816 4.03439 4.13497 4.21584 4.28627 4.31753 4.41596 4.47813 4.48970 4.51410 4.52252 4.54984 4.61350 4.62878 4.65692 4.66383 4.67747 4.80106 4.84007 4.86228 4.96046 5.00284 5.11843 5.18754 5.21343 5.28067 5.37605 5.49958 5.50054 5.78794 5.94141 6.19445 6.35552 6.49400 6.52906 7.18144 7.23629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.168 3.832 3 N -0.332 5.332 4 N -0.311 5.311 5 C 0.175 3.825 6 C -0.021 4.021 7 H 0.147 0.853 8 C -0.117 4.117 9 C 0.131 3.869 10 H 0.116 0.884 11 N -0.709 5.709 12 C 0.517 3.483 13 O -0.575 6.575 14 C -0.100 4.100 15 C -0.067 4.067 16 C -0.097 4.097 17 C -0.128 4.128 18 C 0.112 3.888 19 N -0.398 5.398 20 C -0.024 4.024 21 C -0.199 4.199 22 C -0.193 4.193 23 C -0.028 4.028 24 C -0.059 4.059 25 O -0.537 6.537 26 Si 0.802 3.198 27 C -0.096 4.096 28 C -0.099 4.099 29 C -0.133 4.133 30 O -0.232 6.232 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.418 0.582 37 H 0.128 0.872 38 H 0.134 0.866 39 H 0.146 0.854 40 H 0.132 0.868 41 H 0.172 0.828 42 H 0.156 0.844 43 H 0.172 0.828 44 H 0.123 0.877 45 H 0.378 0.622 46 H -0.294 1.294 47 H -0.293 1.293 48 H 0.118 0.882 49 H 0.136 0.864 50 H 0.084 0.916 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.233 -1.177 -2.485 4.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.043 4.043 3 N -0.178 5.178 4 N -0.156 5.156 5 C -0.036 4.036 6 C -0.041 4.041 7 H 0.165 0.835 8 C -0.156 4.156 9 C 0.025 3.975 10 H 0.134 0.866 11 N -0.361 5.361 12 C 0.305 3.695 13 O -0.454 6.454 14 C -0.139 4.139 15 C -0.068 4.068 16 C -0.115 4.115 17 C -0.148 4.148 18 C 0.022 3.978 19 N -0.072 5.072 20 C -0.152 4.152 21 C -0.223 4.223 22 C -0.217 4.217 23 C -0.137 4.137 24 C -0.168 4.168 25 O -0.344 6.344 26 Si 0.705 3.295 27 C -0.115 4.115 28 C -0.118 4.118 29 C -0.173 4.173 30 O -0.112 6.112 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.115 0.885 35 H 0.124 0.876 36 H 0.255 0.745 37 H 0.146 0.854 38 H 0.152 0.848 39 H 0.163 0.837 40 H 0.150 0.850 41 H 0.189 0.811 42 H 0.174 0.826 43 H 0.189 0.811 44 H 0.141 0.859 45 H 0.226 0.774 46 H -0.221 1.221 47 H -0.221 1.221 48 H 0.136 0.864 49 H 0.154 0.846 50 H 0.102 0.898 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.797 0.185 -2.042 3.468 hybrid contribution -1.177 -0.911 -1.053 1.823 sum -3.974 -0.725 -3.095 5.089 Atomic orbital electron populations 1.20709 0.76948 1.07236 1.06921 1.28985 0.99363 0.78842 0.97117 1.74370 0.96548 1.27048 1.19861 1.74221 1.12674 1.10184 1.18568 1.28257 0.85398 0.91425 0.98547 1.21246 0.82750 0.98990 1.01128 0.83548 1.23424 0.91541 1.04890 0.95729 1.22259 0.85463 0.94651 0.95118 0.86635 1.45869 1.06815 1.23083 1.60355 1.20949 0.83929 0.87271 0.77325 1.90743 1.83148 1.28688 1.42838 1.20769 0.88733 0.98645 1.05763 1.19559 0.95571 0.97730 0.93936 1.21066 0.93143 0.96506 1.00780 1.21120 0.98343 1.01871 0.93418 1.17806 0.85992 1.00334 0.93632 1.41577 1.12762 1.07845 1.44983 1.22319 0.98490 0.86025 1.08339 1.21238 0.96904 0.98907 1.05240 1.21063 1.00250 0.93075 1.07283 1.21283 0.91279 0.95140 1.06025 1.25047 1.10041 0.87273 0.94401 1.86595 1.52142 1.76318 1.19314 0.93495 0.73677 0.77385 0.84930 1.20889 0.93801 0.97734 0.99092 1.21031 0.95629 0.99597 0.95517 1.23565 0.92362 1.02578 0.98779 1.84813 1.17786 1.38704 1.69889 0.86374 0.86847 0.86549 0.88452 0.87644 0.74505 0.85406 0.84799 0.83655 0.85007 0.81114 0.82591 0.81088 0.85922 0.77399 1.22119 1.22085 0.86439 0.84604 0.89774 0.88902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.44 10.51 71.24 0.75 1.19 16 2 C 0.17 0.54 8.48 88.34 0.75 1.29 16 3 N -0.33 -3.15 12.22 -165.50 -2.02 -5.17 16 4 N -0.31 -2.70 11.84 -165.50 -1.96 -4.65 16 5 C 0.18 0.63 7.54 88.34 0.67 1.29 16 6 C -0.02 0.07 4.29 -11.01 -0.05 0.03 16 7 H 0.15 -1.10 8.14 -2.39 -0.02 -1.12 16 8 C -0.12 0.73 7.38 31.12 0.23 0.96 16 9 C 0.13 -0.51 4.24 45.52 0.19 -0.32 16 10 H 0.12 -0.17 7.46 -2.39 -0.02 -0.19 16 11 N -0.71 3.32 5.35 -440.05 -2.36 0.97 16 12 C 0.52 0.11 7.82 87.66 0.69 0.80 16 13 O -0.58 -5.67 15.63 -3.02 -0.05 -5.72 16 14 C -0.10 0.49 5.83 29.10 0.17 0.66 16 15 C -0.07 -0.10 4.37 -19.85 -0.09 -0.19 16 16 C -0.10 -0.17 9.69 22.25 0.22 0.04 16 17 C -0.13 -0.53 9.66 22.38 0.22 -0.31 16 18 C 0.11 0.72 4.89 38.08 0.19 0.91 16 19 N -0.40 -2.67 2.87 -333.41 -0.96 -3.62 16 20 C -0.02 -0.14 11.12 83.18 0.92 0.79 16 21 C -0.20 -0.83 10.86 22.15 0.24 -0.59 16 22 C -0.19 -0.59 9.43 22.15 0.21 -0.39 16 23 C -0.03 -0.13 6.02 41.04 0.25 0.11 16 24 C -0.06 -0.11 2.28 71.23 0.16 0.05 16 25 O -0.54 -2.27 9.89 -148.98 -1.47 -3.75 16 26 Si 0.80 -0.33 31.14 68.60 2.14 1.80 16 27 C -0.10 -0.61 7.68 22.38 0.17 -0.44 16 28 C -0.10 -0.38 9.69 22.25 0.22 -0.17 16 29 C -0.13 0.33 7.42 31.12 0.23 0.56 16 30 O -0.23 -0.89 10.87 -3.64 -0.04 -0.93 16 31 H 0.12 -1.22 8.14 -2.39 -0.02 -1.24 16 32 H 0.11 -1.22 8.14 -2.39 -0.02 -1.24 16 33 H 0.12 -0.99 8.14 -2.39 -0.02 -1.01 16 34 H 0.10 -0.51 8.07 -2.39 -0.02 -0.53 16 35 H 0.11 -0.93 8.14 -2.39 -0.02 -0.94 16 36 H 0.42 -4.06 8.73 -92.71 -0.81 -4.87 16 37 H 0.13 -1.14 8.08 -2.39 -0.02 -1.16 16 38 H 0.13 -1.39 8.08 -2.39 -0.02 -1.40 16 39 H 0.15 -0.39 8.06 -2.91 -0.02 -0.41 16 40 H 0.13 0.29 8.06 -2.91 -0.02 0.27 16 41 H 0.17 0.43 8.06 -2.91 -0.02 0.41 16 42 H 0.16 0.05 8.06 -2.91 -0.02 0.03 16 43 H 0.17 -0.50 6.89 -2.91 -0.02 -0.52 16 44 H 0.12 0.04 7.96 -2.39 -0.02 0.02 16 45 H 0.38 0.53 8.70 -74.06 -0.64 -0.11 16 46 H -0.29 -1.62 7.11 99.48 0.71 -0.91 16 47 H -0.29 -1.67 7.11 99.48 0.71 -0.97 16 48 H 0.12 0.80 7.67 -2.91 -0.02 0.78 16 49 H 0.14 0.12 8.06 -2.91 -0.02 0.10 16 50 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 51 H 0.09 0.00 7.79 -2.39 -0.02 -0.01 16 Total: 0.00 -29.20 431.81 -0.82 -30.02 By element: Atomic # 1 Polarization: -14.79 SS G_CDS: -0.43 Total: -15.22 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 6.33 Total: 6.28 kcal Atomic # 7 Polarization: -5.19 SS G_CDS: -7.30 Total: -12.48 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -1.56 Total: -10.39 kcal Atomic # 14 Polarization: -0.33 SS G_CDS: 2.14 Total: 1.80 kcal Total: -29.20 -0.82 -30.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_13287746.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.533 kcal (2) G-P(sol) polarization free energy of solvation -29.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds