Wall clock time and date at job start Sun Mar 7 2021 04:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30275 * 126.27957 * 2 1 4 4 N 1.28666 * 109.38049 * 179.73070 * 3 2 1 5 5 C 1.30275 * 109.37956 * 0.45000 * 4 3 2 6 6 C 1.50699 * 126.28434 * 179.82362 * 5 4 3 7 7 H 1.09002 * 112.90791 * 190.93877 * 6 5 4 8 8 C 1.53779 * 113.61429 * 322.19205 * 6 5 4 9 9 C 1.53779 * 87.08402 * 139.98140 * 8 6 5 10 10 H 1.09000 * 113.61527 * 89.11480 * 9 8 6 11 11 N 1.46501 * 113.61719 * 220.02087 * 9 8 6 12 12 C 1.34772 * 120.00042 * 252.49461 * 11 9 8 13 13 O 1.21589 * 120.00133 * 0.02562 * 12 11 9 14 14 C 1.47537 * 119.99995 * 179.97438 * 12 11 9 15 15 C 1.40135 * 120.19154 * 179.72390 * 14 12 11 16 16 O 1.35655 * 120.14975 * 0.02562 * 15 14 12 17 17 C 1.38714 * 119.70102 * 179.76732 * 15 14 12 18 18 C 1.38056 * 120.07928 * 0.51108 * 17 15 14 19 19 C 1.50705 * 119.80079 * 179.71733 * 18 17 15 20 20 O 1.42901 * 109.46940 * 65.02085 * 19 18 17 21 21 Si 1.86294 * 109.46937 * 185.02492 * 19 18 17 22 22 C 1.38542 * 120.39328 * 359.74002 * 18 17 15 23 23 C 1.37787 * 120.30168 * 0.02562 * 22 18 17 24 24 C 1.53784 * 113.61308 * 59.68779 * 6 5 4 25 25 O 1.34358 * 126.28507 * 180.02562 * 2 1 3 26 26 H 1.09005 * 109.46824 * 269.99536 * 1 2 3 27 27 H 1.08996 * 109.47359 * 29.99579 * 1 2 3 28 28 H 1.09000 * 109.46798 * 149.99458 * 1 2 3 29 29 H 1.09006 * 113.61307 * 25.43343 * 8 6 5 30 30 H 1.08999 * 113.69146 * 254.53828 * 8 6 5 31 31 H 0.97005 * 120.00129 * 72.49260 * 11 9 8 32 32 H 0.96703 * 114.00220 * 90.00067 * 16 15 14 33 33 H 1.07999 * 119.95912 * 180.23007 * 17 15 14 34 34 H 1.09002 * 109.47196 * 305.02302 * 19 18 17 35 35 H 0.96700 * 113.99573 * 60.00027 * 20 19 18 36 36 H 1.48503 * 110.00248 * 180.02562 * 21 19 18 37 37 H 1.48507 * 109.99961 * 301.31766 * 21 19 18 38 38 H 1.07996 * 119.85090 * 179.97438 * 22 18 17 39 39 H 1.07996 * 120.04749 * 180.02562 * 23 22 18 40 40 H 1.09004 * 113.61451 * 105.47354 * 24 6 5 41 41 H 1.08994 * 113.61477 * 334.56656 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6762 0.0057 5 6 3.5654 -0.6253 -0.0001 6 6 4.8177 -1.4637 -0.0002 7 1 4.6224 -2.5180 -0.1962 8 6 5.9514 -0.8774 -0.8579 9 6 6.9158 -1.3180 0.2560 10 1 7.2941 -2.3324 0.1301 11 7 7.9750 -0.3448 0.5342 12 6 9.2421 -0.6004 0.1529 13 8 9.5061 -1.6385 -0.4224 14 6 10.3086 0.3799 0.4326 15 6 11.6285 0.1156 0.0430 16 8 11.9320 -1.0431 -0.5938 17 6 12.6225 1.0465 0.3068 18 6 12.3130 2.2230 0.9596 19 6 13.3989 3.2272 1.2486 20 8 13.9104 3.7430 0.0180 21 14 12.6992 4.6233 2.2643 22 6 11.0102 2.4856 1.3510 23 6 10.0096 1.5742 1.0929 24 6 5.7215 -1.2211 1.2201 25 8 2.3022 -1.0830 -0.0005 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3634 0.8900 -0.5137 28 1 -0.3633 -0.8900 -0.5139 29 1 5.8914 0.2040 -0.9809 30 1 6.1041 -1.4029 -1.8006 31 1 7.7643 0.4836 0.9929 32 1 11.8678 -0.9909 -1.5573 33 1 13.6404 0.8488 0.0051 34 1 14.2036 2.7431 1.8020 35 1 13.2477 4.1884 -0.5274 36 1 13.7600 5.6209 2.5557 37 1 11.5801 5.2714 1.5342 38 1 10.7780 3.4085 1.8615 39 1 8.9954 1.7833 1.3994 40 1 5.6876 -2.0250 1.9553 41 1 5.5986 -0.2337 1.6650 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14942244_13422076.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:06:30 Heat of formation + Delta-G solvation = -6.648732 kcal Electronic energy + Delta-G solvation = -27335.559088 eV Core-core repulsion = 23185.721338 eV Total energy + Delta-G solvation = -4149.837750 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.23466 -41.75126 -40.70565 -39.26696 -38.37005 -37.22901 -37.15189 -34.94261 -33.73759 -32.63153 -31.12594 -29.74658 -27.79318 -27.03654 -26.56908 -24.15633 -23.97434 -23.56725 -22.92805 -21.58737 -21.06997 -19.41090 -18.68133 -18.57438 -18.41482 -18.27916 -17.47426 -16.83951 -16.61283 -16.60106 -16.21582 -16.02760 -15.79941 -15.53873 -15.42509 -15.08452 -14.81443 -14.49143 -14.30489 -13.88059 -13.81949 -13.77115 -13.74508 -13.36310 -13.21532 -13.01628 -12.85867 -12.76115 -12.42426 -12.40004 -12.10178 -12.03150 -11.85288 -11.61794 -10.88658 -10.65596 -10.43436 -10.21914 -10.06350 -9.81588 -5.04891 -0.43017 0.09180 0.10378 1.15592 1.17660 1.35347 1.49796 1.72713 1.88126 2.03570 2.54626 2.72290 3.05772 3.09501 3.23666 3.28923 3.38540 3.44099 3.54786 3.58976 3.60595 3.70714 3.94779 3.97944 4.19032 4.19288 4.25870 4.32156 4.35374 4.36971 4.48596 4.49713 4.56571 4.60247 4.64214 4.68675 4.75270 4.76783 4.95181 4.99262 5.10971 5.18302 5.39691 5.51473 6.27633 6.39973 6.69268 7.17127 7.30346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.163 3.837 3 N -0.288 5.288 4 N -0.283 5.283 5 C 0.174 3.826 6 C -0.022 4.022 7 H 0.128 0.872 8 C -0.136 4.136 9 C 0.131 3.869 10 H 0.126 0.874 11 N -0.717 5.717 12 C 0.562 3.438 13 O -0.517 6.517 14 C -0.165 4.165 15 C 0.173 3.827 16 O -0.476 6.476 17 C -0.129 4.129 18 C -0.073 4.073 19 C -0.081 4.081 20 O -0.526 6.526 21 Si 0.690 3.310 22 C -0.137 4.137 23 C -0.064 4.064 24 C -0.131 4.131 25 O -0.225 6.225 26 H 0.101 0.899 27 H 0.108 0.892 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.402 0.598 32 H 0.398 0.602 33 H 0.140 0.860 34 H 0.123 0.877 35 H 0.377 0.623 36 H -0.255 1.255 37 H -0.258 1.258 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.091 0.909 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.215 0.208 2.359 4.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.048 4.048 3 N -0.136 5.136 4 N -0.129 5.129 5 C -0.037 4.037 6 C -0.042 4.042 7 H 0.146 0.854 8 C -0.175 4.175 9 C 0.025 3.975 10 H 0.144 0.856 11 N -0.369 5.369 12 C 0.349 3.651 13 O -0.392 6.392 14 C -0.169 4.169 15 C 0.127 3.873 16 O -0.288 6.288 17 C -0.148 4.148 18 C -0.074 4.074 19 C -0.191 4.191 20 O -0.333 6.333 21 Si 0.591 3.409 22 C -0.155 4.155 23 C -0.083 4.083 24 C -0.169 4.169 25 O -0.104 6.104 26 H 0.119 0.881 27 H 0.127 0.873 28 H 0.113 0.887 29 H 0.121 0.879 30 H 0.106 0.894 31 H 0.238 0.762 32 H 0.257 0.743 33 H 0.158 0.842 34 H 0.141 0.859 35 H 0.225 0.775 36 H -0.180 1.180 37 H -0.183 1.183 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.110 0.890 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.170 1.072 2.768 4.342 hybrid contribution -0.787 -0.505 -1.442 1.719 sum -3.957 0.567 1.326 4.212 Atomic orbital electron populations 1.20407 0.79982 1.05951 1.05478 1.28103 0.97956 0.79509 0.99186 1.74441 0.95947 1.25520 1.17666 1.74308 1.12398 1.08997 1.17182 1.27694 0.84684 0.91611 0.99695 1.21003 0.84053 0.98566 1.00577 0.85372 1.23635 0.91940 1.03274 0.98636 1.22351 0.85207 0.94961 0.94958 0.85589 1.45826 1.07314 1.22745 1.61028 1.18073 0.82103 0.86132 0.78756 1.90835 1.82202 1.25767 1.40444 1.20407 0.93771 0.96393 1.06301 1.18506 0.89830 0.85156 0.93832 1.84759 1.90253 1.29519 1.24220 1.21355 1.00324 0.92399 1.00682 1.20382 0.94723 0.95576 0.96741 1.25158 0.99749 1.02053 0.92103 1.86635 1.39224 1.76113 1.31297 0.94865 0.79926 0.78427 0.87656 1.21001 0.92302 1.00337 1.01830 1.21160 0.99642 0.91871 0.95597 1.23508 0.92843 1.04519 0.96073 1.84791 1.17571 1.38452 1.69608 0.88093 0.87341 0.88724 0.87864 0.89437 0.76151 0.74348 0.84189 0.85925 0.77517 1.18011 1.18250 0.84628 0.84777 0.89008 0.88233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.19 10.51 36.01 0.38 0.57 16 2 C 0.16 0.23 8.48 -12.94 -0.11 0.12 16 3 N -0.29 -1.19 12.22 32.55 0.40 -0.79 16 4 N -0.28 -1.05 11.84 32.55 0.39 -0.66 16 5 C 0.17 0.26 7.53 -12.94 -0.10 0.16 16 6 C -0.02 0.04 4.29 -90.96 -0.39 -0.35 16 7 H 0.13 -0.45 8.14 -51.93 -0.42 -0.88 16 8 C -0.14 0.20 7.42 -25.92 -0.19 0.01 16 9 C 0.13 -0.21 4.24 -67.12 -0.28 -0.50 16 10 H 0.13 -0.09 7.47 -51.93 -0.39 -0.48 16 11 N -0.72 0.83 5.30 -54.06 -0.29 0.55 16 12 C 0.56 1.01 7.76 -12.47 -0.10 0.91 16 13 O -0.52 -2.69 14.76 -16.59 -0.24 -2.94 16 14 C -0.17 -0.12 5.89 -104.84 -0.62 -0.74 16 15 C 0.17 0.27 6.72 -38.69 -0.26 0.01 16 16 O -0.48 -1.17 11.58 -40.54 -0.47 -1.64 16 17 C -0.13 -0.05 9.60 -39.47 -0.38 -0.43 16 18 C -0.07 0.06 5.35 -104.57 -0.56 -0.50 16 19 C -0.08 0.10 2.79 36.01 0.10 0.20 16 20 O -0.53 -0.13 12.83 -35.23 -0.45 -0.58 16 21 Si 0.69 -1.44 29.86 -169.99 -5.08 -6.51 16 22 C -0.14 0.26 8.64 -39.63 -0.34 -0.09 16 23 C -0.06 0.11 9.54 -39.20 -0.37 -0.26 16 24 C -0.13 0.35 7.38 -25.91 -0.19 0.16 16 25 O -0.22 -0.41 10.87 5.40 0.06 -0.35 16 26 H 0.10 -0.46 8.14 -51.93 -0.42 -0.88 16 27 H 0.11 -0.43 8.14 -51.93 -0.42 -0.85 16 28 H 0.09 -0.44 8.14 -51.93 -0.42 -0.87 16 29 H 0.10 -0.04 7.78 -51.93 -0.40 -0.45 16 30 H 0.09 -0.14 8.14 -51.93 -0.42 -0.56 16 31 H 0.40 -1.36 6.76 -40.82 -0.28 -1.63 16 32 H 0.40 -0.45 9.06 45.56 0.41 -0.04 16 33 H 0.14 0.02 8.06 -52.49 -0.42 -0.41 16 34 H 0.12 -0.23 7.96 -51.93 -0.41 -0.64 16 35 H 0.38 -1.01 8.70 45.56 0.40 -0.62 16 36 H -0.26 -0.38 7.11 56.52 0.40 0.02 16 37 H -0.26 0.12 7.00 56.52 0.40 0.51 16 38 H 0.14 -0.50 4.81 -52.49 -0.25 -0.75 16 39 H 0.13 -0.60 6.40 -52.49 -0.34 -0.94 16 40 H 0.09 -0.33 8.14 -51.93 -0.42 -0.76 16 41 H 0.10 -0.24 8.07 -51.93 -0.42 -0.66 16 LS Contribution 353.45 15.07 5.33 5.33 Total: 0.00 -11.56 353.45 -7.62 -19.18 By element: Atomic # 1 Polarization: -7.03 SS G_CDS: -3.84 Total: -10.87 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -3.42 Total: -0.71 kcal Atomic # 7 Polarization: -1.41 SS G_CDS: 0.50 Total: -0.91 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -1.11 Total: -5.50 kcal Atomic # 14 Polarization: -1.44 SS G_CDS: -5.08 Total: -6.51 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -11.56 -7.62 -19.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_13422076.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.529 kcal (2) G-P(sol) polarization free energy of solvation -11.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds