Wall clock time and date at job start Sun Mar 7 2021 04:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30278 * 126.28086 * 2 1 4 4 N 1.28666 * 109.37871 * 179.73279 * 3 2 1 5 5 C 1.30276 * 109.38061 * 0.44403 * 4 3 2 6 6 C 1.50704 * 126.27824 * 179.82793 * 5 4 3 7 7 H 1.09004 * 112.84382 * 168.49088 * 6 5 4 8 8 C 1.53777 * 113.61463 * 299.68802 * 6 5 4 9 9 C 1.53778 * 87.08090 * 139.98358 * 8 6 5 10 10 H 1.09002 * 113.61755 * 89.20095 * 9 8 6 11 11 N 1.46498 * 113.61843 * 220.01779 * 9 8 6 12 12 C 1.34768 * 120.00297 * 203.47171 * 11 9 8 13 13 O 1.21586 * 120.00323 * 0.02562 * 12 11 9 14 14 C 1.47538 * 119.99927 * 179.97438 * 12 11 9 15 15 C 1.40139 * 120.19043 * 180.25573 * 14 12 11 16 16 O 1.35650 * 120.15564 * 0.02562 * 15 14 12 17 17 C 1.38716 * 119.69577 * 180.32064 * 15 14 12 18 18 C 1.50702 * 119.95517 * 179.67346 * 17 15 14 19 19 O 1.42899 * 109.46946 * 75.02287 * 18 17 15 20 20 Si 1.86299 * 109.47109 * 195.02263 * 18 17 15 21 21 C 1.38051 * 120.08716 * 359.69957 * 17 15 14 22 22 C 1.38548 * 120.38770 * 359.97438 * 21 17 15 23 23 C 1.50703 * 119.84990 * 179.97438 * 22 21 17 24 24 C 1.37790 * 120.30368 * 0.02632 * 22 21 17 25 25 C 1.53781 * 87.17498 * 334.60947 * 9 8 6 26 26 O 1.34352 * 107.43433 * 359.56368 * 5 4 3 27 27 H 1.08999 * 109.47628 * 269.99473 * 1 2 3 28 28 H 1.09000 * 109.47615 * 29.99944 * 1 2 3 29 29 H 1.08999 * 109.47305 * 149.99978 * 1 2 3 30 30 H 1.09001 * 113.61738 * 25.43512 * 8 6 5 31 31 H 1.08998 * 113.68998 * 254.54537 * 8 6 5 32 32 H 0.97006 * 119.99442 * 23.47076 * 11 9 8 33 33 H 0.96697 * 113.99965 * 270.30711 * 16 15 14 34 34 H 1.08993 * 109.47528 * 315.02508 * 18 17 15 35 35 H 0.96704 * 113.99684 * 59.99769 * 19 18 17 36 36 H 1.48504 * 110.00135 * 180.02562 * 20 18 17 37 37 H 1.48502 * 109.99979 * 301.32103 * 20 18 17 38 38 H 1.07999 * 119.81025 * 180.02562 * 21 17 15 39 39 H 1.09000 * 109.47205 * 270.02452 * 23 22 21 40 40 H 1.09001 * 109.47112 * 30.02354 * 23 22 21 41 41 H 1.08996 * 109.47240 * 150.02215 * 23 22 21 42 42 H 1.08002 * 120.04466 * 179.97438 * 24 22 21 43 43 H 1.09002 * 113.61698 * 139.93593 * 25 9 8 44 44 H 1.08994 * 113.61177 * 270.84265 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2778 1.0502 0.0000 4 7 3.5089 0.6761 0.0057 5 6 3.5653 -0.6254 -0.0001 6 6 4.8176 -1.4637 -0.0001 7 1 4.6211 -2.5180 0.1950 8 6 5.7214 -1.2210 -1.2203 9 6 6.9157 -1.3179 -0.2564 10 1 7.2950 -2.3321 -0.1317 11 7 7.9748 -0.3447 -0.5344 12 6 9.2362 -0.5864 -0.1260 13 8 9.4953 -1.6123 0.4729 14 6 10.3029 0.3935 -0.4065 15 6 11.6169 0.1438 0.0117 16 8 11.9147 -1.0007 0.6763 17 6 12.6106 1.0752 -0.2516 18 6 14.0242 0.8160 0.2019 19 8 14.6258 -0.1616 -0.6492 20 14 15.0032 2.3988 0.1186 21 6 12.3062 2.2394 -0.9281 22 6 11.0096 2.4867 -1.3492 23 6 10.6907 3.7620 -2.0862 24 6 10.0101 1.5726 -1.0961 25 6 5.9530 -0.8787 0.8595 26 8 2.3021 -1.0830 0.0000 27 1 -0.3634 -0.0001 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 5.5985 -0.2335 -1.6653 31 1 5.6882 -2.0240 -1.9566 32 1 7.7682 0.4736 -1.0126 33 1 11.8285 -0.9315 1.6369 34 1 14.0150 0.4481 1.2279 35 1 14.6678 0.0993 -1.5794 36 1 16.3994 2.1565 0.5628 37 1 14.9967 2.9275 -1.2691 38 1 13.0834 2.9613 -1.1311 39 1 10.4130 4.5357 -1.3704 40 1 11.5665 4.0851 -2.6490 41 1 9.8620 3.5875 -2.7724 42 1 9.0008 1.7699 -1.4259 43 1 6.1057 -1.4067 1.8008 44 1 5.8935 0.2025 0.9843 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14942244_13422088.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:06:33 Heat of formation + Delta-G solvation = -18.817302 kcal Electronic energy + Delta-G solvation = -29627.961332 eV Core-core repulsion = 25322.058294 eV Total energy + Delta-G solvation = -4305.903038 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.32510 -41.83833 -40.74083 -39.27476 -38.03542 -37.75673 -37.26948 -35.01947 -33.72034 -33.05263 -32.57012 -29.64152 -27.55650 -27.03901 -26.91446 -26.75865 -25.17445 -23.71824 -23.23196 -22.01868 -21.54215 -20.84897 -19.63830 -18.66882 -18.53283 -18.37425 -17.94261 -17.53058 -16.96250 -16.79103 -16.48748 -16.06730 -15.92853 -15.79539 -15.54336 -15.43047 -14.91173 -14.62398 -14.44888 -14.25647 -14.17778 -13.73495 -13.65292 -13.60901 -13.57764 -13.43667 -13.33244 -12.98340 -12.92031 -12.69647 -12.54518 -12.35834 -12.25422 -11.93610 -11.91039 -11.80502 -11.70922 -11.01784 -10.53305 -10.48971 -10.27542 -10.02701 -9.49826 -4.95007 -0.35008 0.05606 0.08057 1.18075 1.24285 1.25332 1.54846 1.69767 1.93107 2.06863 2.55479 2.76799 3.17086 3.18453 3.34549 3.34889 3.46614 3.53941 3.61488 3.64762 3.71485 3.77976 4.00804 4.11829 4.18548 4.30004 4.34641 4.42957 4.48689 4.52323 4.52820 4.60838 4.63080 4.65892 4.69195 4.79117 4.82324 4.86475 4.89969 4.97643 5.01721 5.07452 5.18749 5.24072 5.42223 5.44811 5.67899 6.42961 6.46544 6.75227 7.12784 7.19927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.168 3.832 3 N -0.330 5.330 4 N -0.310 5.310 5 C 0.176 3.824 6 C -0.019 4.019 7 H 0.149 0.851 8 C -0.118 4.118 9 C 0.129 3.871 10 H 0.117 0.883 11 N -0.704 5.704 12 C 0.559 3.441 13 O -0.559 6.559 14 C -0.181 4.181 15 C 0.167 3.833 16 O -0.490 6.490 17 C -0.154 4.154 18 C -0.083 4.083 19 O -0.547 6.547 20 Si 0.782 3.218 21 C -0.079 4.079 22 C -0.095 4.095 23 C -0.118 4.118 24 C -0.061 4.061 25 C -0.131 4.131 26 O -0.232 6.232 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.413 0.587 33 H 0.403 0.597 34 H 0.115 0.885 35 H 0.383 0.617 36 H -0.304 1.304 37 H -0.268 1.268 38 H 0.153 0.847 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.156 0.844 43 H 0.087 0.913 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.294 4.566 -1.616 7.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.043 4.043 3 N -0.177 5.177 4 N -0.156 5.156 5 C -0.036 4.036 6 C -0.039 4.039 7 H 0.166 0.834 8 C -0.156 4.156 9 C 0.024 3.976 10 H 0.135 0.865 11 N -0.356 5.356 12 C 0.348 3.652 13 O -0.438 6.438 14 C -0.185 4.185 15 C 0.120 3.880 16 O -0.303 6.303 17 C -0.155 4.155 18 C -0.191 4.191 19 O -0.354 6.354 20 Si 0.686 3.314 21 C -0.097 4.097 22 C -0.095 4.095 23 C -0.174 4.174 24 C -0.080 4.080 25 C -0.171 4.171 26 O -0.112 6.112 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.132 0.868 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.251 0.749 33 H 0.262 0.738 34 H 0.133 0.867 35 H 0.232 0.768 36 H -0.233 1.233 37 H -0.194 1.194 38 H 0.170 0.830 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.174 0.826 43 H 0.106 0.894 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.946 4.941 -1.526 6.505 hybrid contribution -0.452 -1.670 -0.482 1.796 sum -4.398 3.271 -2.009 5.838 Atomic orbital electron populations 1.20701 0.76973 1.07278 1.06843 1.28980 0.99353 0.78852 0.97153 1.74372 0.96510 1.26994 1.19804 1.74225 1.12683 1.10151 1.18508 1.28205 0.85359 0.91410 0.98614 1.21245 0.82735 0.99107 1.00805 0.83362 1.23428 0.91362 1.05011 0.95843 1.22343 0.85205 0.94397 0.95647 0.86546 1.45751 1.07022 1.24051 1.58802 1.18295 0.82910 0.85596 0.78426 1.90806 1.82837 1.28201 1.42002 1.20420 0.93295 0.97500 1.07249 1.18517 0.90102 0.85160 0.94185 1.84757 1.90089 1.31093 1.24347 1.20647 0.96516 0.94886 1.03440 1.25283 0.92497 1.03998 0.97286 1.86639 1.81598 1.44189 1.23014 0.94075 0.77096 0.77281 0.82990 1.21393 0.97666 0.95547 0.95099 1.20093 0.92401 0.97822 0.99167 1.20916 1.03506 0.92981 1.00017 1.21416 1.00759 0.90890 0.94938 1.23592 0.92063 1.02661 0.98744 1.84810 1.17765 1.38712 1.69866 0.86542 0.86466 0.86820 0.88357 0.87525 0.74878 0.73795 0.86691 0.76802 1.23274 1.19431 0.82956 0.89291 0.90485 0.90146 0.82623 0.89409 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.45 10.51 71.23 0.75 1.20 16 2 C 0.17 0.49 8.48 88.34 0.75 1.24 16 3 N -0.33 -3.00 12.22 -165.51 -2.02 -5.02 16 4 N -0.31 -2.60 11.83 -165.51 -1.96 -4.56 16 5 C 0.18 0.61 7.54 88.34 0.67 1.27 16 6 C -0.02 0.06 4.29 -10.95 -0.05 0.01 16 7 H 0.15 -1.11 8.14 -2.39 -0.02 -1.13 16 8 C -0.12 0.62 7.38 31.12 0.23 0.85 16 9 C 0.13 -0.28 4.21 45.52 0.19 -0.09 16 10 H 0.12 0.02 7.50 -2.39 -0.02 0.00 16 11 N -0.70 0.71 5.31 -443.22 -2.35 -1.65 16 12 C 0.56 3.30 7.76 86.70 0.67 3.98 16 13 O -0.56 -7.65 14.78 16.93 0.25 -7.39 16 14 C -0.18 -0.63 5.89 -20.01 -0.12 -0.75 16 15 C 0.17 0.96 6.69 22.85 0.15 1.11 16 16 O -0.49 -4.51 10.91 -68.73 -0.75 -5.26 16 17 C -0.15 -0.22 5.27 -19.79 -0.10 -0.33 16 18 C -0.08 -0.11 2.38 71.24 0.17 0.06 16 19 O -0.55 -3.47 12.88 -148.98 -1.92 -5.38 16 20 Si 0.78 -2.10 30.24 68.60 2.07 -0.02 16 21 C -0.08 0.21 8.30 22.30 0.19 0.39 16 22 C -0.09 0.37 5.87 -19.90 -0.12 0.26 16 23 C -0.12 1.02 10.00 71.24 0.71 1.73 16 24 C -0.06 0.17 9.18 22.52 0.21 0.37 16 25 C -0.13 0.26 7.43 31.18 0.23 0.49 16 26 O -0.23 -0.85 10.87 -3.52 -0.04 -0.89 16 27 H 0.12 -1.18 8.14 -2.39 -0.02 -1.20 16 28 H 0.12 -1.05 8.14 -2.39 -0.02 -1.07 16 29 H 0.11 -1.26 8.14 -2.39 -0.02 -1.28 16 30 H 0.10 -0.45 8.06 -2.39 -0.02 -0.47 16 31 H 0.11 -0.84 8.14 -2.39 -0.02 -0.86 16 32 H 0.41 -2.48 6.74 -92.70 -0.63 -3.11 16 33 H 0.40 0.93 9.06 -74.06 -0.67 0.26 16 34 H 0.12 0.08 7.83 -2.39 -0.02 0.06 16 35 H 0.38 0.02 8.70 -74.05 -0.64 -0.63 16 36 H -0.30 -1.71 7.11 99.48 0.71 -1.01 16 37 H -0.27 0.32 6.68 99.48 0.66 0.98 16 38 H 0.15 -0.98 4.83 -2.91 -0.01 -0.99 16 39 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 40 H 0.08 -0.72 8.08 -2.39 -0.02 -0.74 16 41 H 0.08 -0.80 8.08 -2.39 -0.02 -0.82 16 42 H 0.16 -1.34 6.40 -2.91 -0.02 -1.36 16 43 H 0.09 -0.17 8.14 -2.39 -0.02 -0.19 16 44 H 0.09 0.04 7.78 -2.39 -0.02 0.03 16 Total: 0.00 -29.77 374.09 -3.04 -32.81 By element: Atomic # 1 Polarization: -13.58 SS G_CDS: -0.85 Total: -14.43 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: 4.53 Total: 11.79 kcal Atomic # 7 Polarization: -4.89 SS G_CDS: -6.34 Total: -11.23 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -2.46 Total: -18.93 kcal Atomic # 14 Polarization: -2.10 SS G_CDS: 2.07 Total: -0.02 kcal Total: -29.77 -3.04 -32.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14942244_13422088.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.994 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds